Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 361 |
| AclWI | GGATC | 2 cut(s) | 347, 360 |
| AcsI | RAATTY | 4 cut(s) | 68, 122, 192, 513 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AfaI | GTAC | 1 cut(s) | 526 |
| AflII | CTTAAG | 2 cut(s) | 508, 520 |
| AgeI | ACCGGT | 1 cut(s) | 385 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AluBI | AGCT | 1 cut(s) | 398 |
| AluI | AGCT | 1 cut(s) | 398 |
| Alw26I | GTCTC | 2 cut(s) | 468, 487 |
| AlwI | GGATC | 2 cut(s) | 347, 360 |
| ApoI | RAATTY | 4 cut(s) | 68, 122, 192, 513 |
| AsiGI | ACCGGT | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 1 cut(s) | 578 |
| AsuII | TTCGAA | 1 cut(s) | 83 |
| AsuNHI | GCTAGC | 1 cut(s) | 139 |
| BamHI | GGATCC | 1 cut(s) | 352 |
| BanI | GGYRCC | 1 cut(s) | 361 |
| BbvCI | CCTCAGC | 1 cut(s) | 498 |
| BccI | CCATC | 2 cut(s) | 553, 563 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BcoDI | GTCTC | 2 cut(s) | 468, 487 |
| BfaI | CTAG | 2 cut(s) | 140, 528 |
| BfmI | CTRYAG | 2 cut(s) | 402, 486 |
| BfrI | CTTAAG | 2 cut(s) | 508, 520 |
| BmcAI | AGTACT | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 1 cut(s) | 366 |
| BmiI | GGNNCC | 2 cut(s) | 354, 363 |
| BmrFI | CCNGG | 1 cut(s) | 366 |
| BmsI | GCATC | 1 cut(s) | 126 |
| BmtI | GCTAGC | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 498 |
| Bpu14I | TTCGAA | 1 cut(s) | 83 |
| BsaI | GGTCTC | 1 cut(s) | 487 |
| BsaJI | CCNNGG | 2 cut(s) | 356, 365 |
| BsaWI | WCCGGW | 1 cut(s) | 385 |
| Bse118I | RCCGGY | 1 cut(s) | 385 |
| Bse1I | ACTGG | 2 cut(s) | 317, 458 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseDI | CCNNGG | 2 cut(s) | 356, 365 |
| BseGI | GGATG | 2 cut(s) | 538, 564 |
| BseMII | CTCAG | 1 cut(s) | 489 |
| BseNI | ACTGG | 2 cut(s) | 317, 458 |
| BseRI | GAGGAG | 2 cut(s) | 283, 476 |
| BshNI | GGYRCC | 1 cut(s) | 361 |
| BshTI | ACCGGT | 1 cut(s) | 385 |
| BsiSI | CCGG | 1 cut(s) | 386 |
| BslFI | GGGAC | 1 cut(s) | 586 |
| BsmAI | GTCTC | 2 cut(s) | 468, 487 |
| BsmFI | GGGAC | 1 cut(s) | 586 |
| Bso31I | GGTCTC | 1 cut(s) | 487 |
| Bsp119I | TTCGAA | 1 cut(s) | 83 |
| Bsp143I | GATC | 1 cut(s) | 352 |
| BspCNI | CTCAG | 1 cut(s) | 490 |
| BspLI | GGNNCC | 2 cut(s) | 354, 363 |
| BspOI | GCTAGC | 1 cut(s) | 143 |
| BspPI | GGATC | 2 cut(s) | 347, 360 |
| BspT104I | TTCGAA | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 1 cut(s) | 361 |
| BspTI | CTTAAG | 2 cut(s) | 508, 520 |
| BspTNI | GGTCTC | 1 cut(s) | 487 |
| BsrFI | RCCGGY | 1 cut(s) | 385 |
| BsrI | ACTGG | 2 cut(s) | 317, 458 |
| BssAI | RCCGGY | 1 cut(s) | 385 |
| BssECI | CCNNGG | 2 cut(s) | 356, 365 |
| BssMI | GATC | 1 cut(s) | 352 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst6I | CTCTTC | 1 cut(s) | 486 |
| BstAFI | CTTAAG | 2 cut(s) | 508, 520 |
| BstBI | TTCGAA | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 2 cut(s) | 141, 150 |
| BstDEI | CTNAG | 1 cut(s) | 498 |
| BstDSI | CCRYGG | 1 cut(s) | 356 |
| BstF5I | GGATG | 2 cut(s) | 538, 564 |
| BstKTI | GATC | 1 cut(s) | 355 |
| BstMAI | GTCTC | 2 cut(s) | 468, 487 |
| BstMBI | GATC | 1 cut(s) | 352 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 145, 149 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstSCI | CCNGG | 1 cut(s) | 364 |
| BstSFI | CTRYAG | 2 cut(s) | 402, 486 |
| BstX2I | RGATCY | 1 cut(s) | 352 |
| BstYI | RGATCY | 1 cut(s) | 352 |
| BtgI | CCRYGG | 1 cut(s) | 356 |
| BtgZI | GCGATG | 1 cut(s) | 149 |
| BtsCI | GGATG | 2 cut(s) | 538, 564 |
| BtsIMutI | CAGTG | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 2 cut(s) | 141, 150 |
| Cfr10I | RCCGGY | 1 cut(s) | 385 |
| Csp6I | GTAC | 1 cut(s) | 525 |
| CspAI | ACCGGT | 1 cut(s) | 385 |
| CviAII | CATG | 3 cut(s) | 245, 264, 345 |
| CviJI | RGCY | 6 cut(s) | 152, 203, 306, 398, 497, 503 |
| CviKI_1 | RGCY | 6 cut(s) | 152, 203, 306, 398, 497, 503 |
| CviQI | GTAC | 1 cut(s) | 525 |
| DdeI | CTNAG | 1 cut(s) | 498 |
| DpnI | GATC | 1 cut(s) | 354 |
| DpnII | GATC | 1 cut(s) | 352 |
| Eam1104I | CTCTTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 1 cut(s) | 486 |
| Eco31I | GGTCTC | 1 cut(s) | 487 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| EcoRI | GAATTC | 1 cut(s) | 513 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| FaeI | CATG | 3 cut(s) | 248, 267, 348 |
| FaiI | YATR | 6 cut(s) | 198, 246, 265, 346, 488, 595 |
| FaqI | GGGAC | 1 cut(s) | 586 |
| FatI | CATG | 3 cut(s) | 244, 263, 344 |
| FokI | GGATG | 2 cut(s) | 545, 571 |
| FspBI | CTAG | 2 cut(s) | 140, 528 |
| HapII | CCGG | 1 cut(s) | 386 |
| Hin1II | CATG | 3 cut(s) | 248, 267, 348 |
| HinfI | GANTC | 2 cut(s) | 12, 370 |
| HpaII | CCGG | 1 cut(s) | 386 |
| HphI | GGTGA | 1 cut(s) | 578 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy188III | TCNNGA | 1 cut(s) | 586 |
| HpyAV | CCTTC | 5 cut(s) | 79, 86, 225, 264, 557 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 236, 334, 593 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 145, 149 |
| HpyF3I | CTNAG | 1 cut(s) | 498 |
| Hsp92II | CATG | 3 cut(s) | 248, 267, 348 |
| Kzo9I | GATC | 1 cut(s) | 352 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 8 cut(s) | 134, 204, 298, 351, 378, 399, 414, 439 |
| LweI | GCATC | 1 cut(s) | 126 |
| MaeI | CTAG | 2 cut(s) | 140, 528 |
| MaeIII | GTNAC | 1 cut(s) | 428 |
| MalI | GATC | 1 cut(s) | 354 |
| MboI | GATC | 1 cut(s) | 352 |
| MboII | GAAGA | 2 cut(s) | 101, 503 |
| MflI | RGATCY | 1 cut(s) | 352 |
| MluCI | AATT | 7 cut(s) | 68, 79, 122, 127, 192, 468, 513 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 8 cut(s) | 183, 261, 333, 454, 487, 493, 532, 549 |
| MseI | TTAA | 6 cut(s) | 126, 293, 434, 467, 509, 521 |
| MspCI | CTTAAG | 2 cut(s) | 508, 520 |
| MspI | CCGG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 1 cut(s) | 366 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 145, 149 |
| NdeII | GATC | 1 cut(s) | 352 |
| NheI | GCTAGC | 1 cut(s) | 139 |
| NlaIII | CATG | 3 cut(s) | 248, 267, 348 |
| NlaIV | GGNNCC | 2 cut(s) | 354, 363 |
| NmuCI | GTSAC | 1 cut(s) | 428 |
| NspV | TTCGAA | 1 cut(s) | 83 |
| PfeI | GAWTC | 2 cut(s) | 12, 370 |
| PflFI | GACNNNGTC | 1 cut(s) | 479 |
| PinAI | ACCGGT | 1 cut(s) | 385 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PspN4I | GGNNCC | 2 cut(s) | 354, 363 |
| PsuI | RGATCY | 1 cut(s) | 352 |
| PsyI | GACNNNGTC | 1 cut(s) | 479 |
| RsaI | GTAC | 1 cut(s) | 526 |
| RsaNI | GTAC | 1 cut(s) | 525 |
| SaqAI | TTAA | 6 cut(s) | 126, 293, 434, 467, 509, 521 |
| Sau3AI | GATC | 1 cut(s) | 352 |
| ScaI | AGTACT | 1 cut(s) | 526 |
| ScrFI | CCNGG | 1 cut(s) | 366 |
| SetI | ASST | 5 cut(s) | 97, 117, 400, 426, 568 |
| SfaNI | GCATC | 1 cut(s) | 126 |
| SfcI | CTRYAG | 2 cut(s) | 402, 486 |
| SfuI | TTCGAA | 1 cut(s) | 83 |
| SmlI | CTYRAG | 2 cut(s) | 508, 520 |
| SmoI | CTYRAG | 2 cut(s) | 508, 520 |
| Sse9I | AATT | 7 cut(s) | 68, 79, 122, 127, 192, 468, 513 |
| SspI | AATATT | 1 cut(s) | 209 |
| SspMI | CTAG | 2 cut(s) | 140, 528 |
| StyD4I | CCNGG | 1 cut(s) | 364 |
| TaqI | TCGA | 3 cut(s) | 83, 190, 598 |
| TasI | AATT | 7 cut(s) | 68, 79, 122, 127, 192, 468, 513 |
| TatI | WGTACW | 1 cut(s) | 524 |
| TfiI | GAWTC | 2 cut(s) | 12, 370 |
| Tru1I | TTAA | 6 cut(s) | 126, 293, 434, 467, 509, 521 |
| Tru9I | TTAA | 6 cut(s) | 126, 293, 434, 467, 509, 521 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 1 cut(s) | 428 |
| Tsp45I | GTSAC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspGWI | ACGGA | 1 cut(s) | 345 |
| TspRI | CASTG | 1 cut(s) | 433 |
| Tth111I | GACNNNGTC | 1 cut(s) | 479 |
| Vha464I | CTTAAG | 2 cut(s) | 508, 520 |
| XapI | RAATTY | 4 cut(s) | 68, 122, 192, 513 |
| XspI | CTAG | 2 cut(s) | 140, 528 |
| ZrmI | AGTACT | 1 cut(s) | 526 |