Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 77 - 197 | 3.9e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 198 |
| AclI | AACGTT | 1 cut(s) | 633 |
| AcsI | RAATTY | 3 cut(s) | 302, 314, 472 |
| AfaI | GTAC | 2 cut(s) | 139, 610 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 212, 536 |
| AgsI | TTSAA | 4 cut(s) | 155, 229, 425, 686 |
| AjnI | CCWGG | 1 cut(s) | 146 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 178, 210 |
| AluBI | AGCT | 2 cut(s) | 70, 94 |
| AluI | AGCT | 2 cut(s) | 70, 94 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 2 cut(s) | 116, 165 |
| ApoI | RAATTY | 3 cut(s) | 302, 314, 472 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 418, 450 |
| AsuHPI | GGTGA | 2 cut(s) | 311, 479 |
| BaeGI | GKGCMC | 1 cut(s) | 203 |
| BanI | GGYRCC | 1 cut(s) | 198 |
| BbsI | GAAGAC | 1 cut(s) | 39 |
| BbvI | GCAGC | 2 cut(s) | 103, 177 |
| BccI | CCATC | 1 cut(s) | 265 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 566, 600 |
| BciT130I | CCWGG | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BfaI | CTAG | 3 cut(s) | 135, 383, 485 |
| BfmI | CTRYAG | 2 cut(s) | 207, 248 |
| BisI | GCNGC | 2 cut(s) | 117, 166 |
| BlsI | GCNGC | 2 cut(s) | 118, 167 |
| BmcAI | AGTACT | 1 cut(s) | 139 |
| Bme1390I | CCNGG | 1 cut(s) | 148 |
| BmiI | GGNNCC | 1 cut(s) | 200 |
| BmrFI | CCNGG | 1 cut(s) | 148 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BpiI | GAAGAC | 1 cut(s) | 39 |
| BsaBI | GATNNNNATC | 1 cut(s) | 672 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 212, 536 |
| Bse1I | ACTGG | 1 cut(s) | 187 |
| Bse3DI | GCAATG | 2 cut(s) | 306, 354 |
| Bse8I | GATNNNNATC | 1 cut(s) | 672 |
| BseBI | CCWGG | 1 cut(s) | 148 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 1 cut(s) | 222 |
| BseJI | GATNNNNATC | 1 cut(s) | 672 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 212, 536 |
| BseMI | GCAATG | 2 cut(s) | 306, 354 |
| BseNI | ACTGG | 1 cut(s) | 187 |
| BseSI | GKGCMC | 1 cut(s) | 203 |
| BseXI | GCAGC | 2 cut(s) | 103, 177 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BshNI | GGYRCC | 1 cut(s) | 198 |
| BslFI | GGGAC | 1 cut(s) | 476 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 212, 536 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 1 cut(s) | 476 |
| BsnI | GGCC | 1 cut(s) | 146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 203 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspLI | GGNNCC | 1 cut(s) | 200 |
| BspT107I | GGYRCC | 1 cut(s) | 198 |
| BsrDI | GCAATG | 2 cut(s) | 306, 354 |
| BsrI | ACTGG | 1 cut(s) | 187 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 1 cut(s) | 148 |
| Bst4CI | ACNGT | 3 cut(s) | 252, 406, 467 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 519 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 396 |
| BstDEI | CTNAG | 1 cut(s) | 493 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 210 |
| BstF5I | GGATG | 1 cut(s) | 222 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 116, 122, 131, 317, 449 |
| BstNI | CCWGG | 1 cut(s) | 148 |
| BstNSI | RCATGY | 2 cut(s) | 356, 551 |
| BstSCI | CCNGG | 1 cut(s) | 146 |
| BstSFI | CTRYAG | 2 cut(s) | 207, 248 |
| BstSLI | GKGCMC | 1 cut(s) | 203 |
| BstV1I | GCAGC | 2 cut(s) | 103, 177 |
| BstV2I | GAAGAC | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtgZI | GCGATG | 2 cut(s) | 65, 284 |
| BtsCI | GGATG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 396 |
| Csp6I | GTAC | 2 cut(s) | 138, 609 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 336, 371 |
| CviAII | CATG | 5 cut(s) | 263, 353, 377, 400, 548 |
| CviQI | GTAC | 2 cut(s) | 138, 609 |
| DdeI | CTNAG | 1 cut(s) | 493 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 519 |
| EarI | CTCTTC | 2 cut(s) | 150, 519 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| Eco32I | GATATC | 1 cut(s) | 505 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 210 |
| EcoRI | GAATTC | 1 cut(s) | 302 |
| EcoRII | CCWGG | 1 cut(s) | 146 |
| EcoRV | GATATC | 1 cut(s) | 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| EcoT22I | ATGCAT | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 5 cut(s) | 266, 356, 380, 403, 551 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 178, 210 |
| FaqI | GGGAC | 1 cut(s) | 476 |
| FatI | CATG | 5 cut(s) | 262, 352, 376, 399, 547 |
| FauNDI | CATATG | 1 cut(s) | 678 |
| Fnu4HI | GCNGC | 2 cut(s) | 117, 166 |
| FokI | GGATG | 1 cut(s) | 229 |
| Fsp4HI | GCNGC | 2 cut(s) | 117, 166 |
| FspBI | CTAG | 3 cut(s) | 135, 383, 485 |
| GluI | GCNGC | 2 cut(s) | 117, 166 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| Hin1II | CATG | 5 cut(s) | 266, 356, 380, 403, 551 |
| HindIII | AAGCTT | 2 cut(s) | 68, 92 |
| HinfI | GANTC | 2 cut(s) | 104, 511 |
| HphI | GGTGA | 2 cut(s) | 311, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188III | TCNNGA | 2 cut(s) | 508, 638 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| HpyAV | CCTTC | 2 cut(s) | 206, 540 |
| HpyCH4III | ACNGT | 3 cut(s) | 252, 406, 467 |
| HpyCH4IV | ACGT | 1 cut(s) | 633 |
| HpyCH4V | TGCA | 6 cut(s) | 286, 347, 352, 368, 394, 587 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 116, 122, 131, 317, 449 |
| HpyF3I | CTNAG | 1 cut(s) | 493 |
| HpySE526I | ACGT | 1 cut(s) | 633 |
| Hsp92II | CATG | 5 cut(s) | 266, 356, 380, 403, 551 |
| LmnI | GCTCC | 3 cut(s) | 124, 239, 266 |
| LpnPI | CCDG | 6 cut(s) | 133, 135, 160, 168, 565, 651 |
| Lsp1109I | GCAGC | 2 cut(s) | 103, 177 |
| LweI | GCATC | 1 cut(s) | 207 |
| MaeI | CTAG | 3 cut(s) | 135, 383, 485 |
| MaeII | ACGT | 1 cut(s) | 633 |
| MaeIII | GTNAC | 2 cut(s) | 337, 406 |
| MboII | GAAGA | 4 cut(s) | 44, 167, 506, 509 |
| MhlI | GDGCHC | 1 cut(s) | 203 |
| MluCI | AATT | 6 cut(s) | 224, 302, 314, 369, 386, 472 |
| MlyI | GAGTC | 1 cut(s) | 505 |
| MnlI | CCTC | 3 cut(s) | 269, 571, 668 |
| Mph1103I | ATGCAT | 1 cut(s) | 354 |
| MseI | TTAA | 2 cut(s) | 372, 600 |
| MspR9I | CCNGG | 1 cut(s) | 148 |
| MvaI | CCWGG | 1 cut(s) | 148 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 116, 122, 131, 317, 449 |
| NdeI | CATATG | 1 cut(s) | 678 |
| NlaIII | CATG | 5 cut(s) | 266, 356, 380, 403, 551 |
| NlaIV | GGNNCC | 1 cut(s) | 200 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| NsiI | ATGCAT | 1 cut(s) | 354 |
| NspI | RCATGY | 2 cut(s) | 356, 551 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 2 cut(s) | 118, 167 |
| PleI | GAGTC | 1 cut(s) | 505 |
| PpsI | GAGTC | 1 cut(s) | 505 |
| Psp1406I | AACGTT | 1 cut(s) | 633 |
| Psp6I | CCWGG | 1 cut(s) | 146 |
| PspGI | CCWGG | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 1 cut(s) | 200 |
| RsaI | GTAC | 2 cut(s) | 139, 610 |
| RsaNI | GTAC | 2 cut(s) | 138, 609 |
| SaqAI | TTAA | 2 cut(s) | 372, 600 |
| SatI | GCNGC | 2 cut(s) | 117, 166 |
| ScaI | AGTACT | 1 cut(s) | 139 |
| SchI | GAGTC | 1 cut(s) | 505 |
| ScrFI | CCNGG | 1 cut(s) | 148 |
| SduI | GDGCHC | 1 cut(s) | 203 |
| SetI | ASST | 7 cut(s) | 72, 96, 208, 280, 563, 584, 636 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| SfcI | CTRYAG | 2 cut(s) | 207, 248 |
| Sse9I | AATT | 6 cut(s) | 224, 302, 314, 369, 386, 472 |
| SspMI | CTAG | 3 cut(s) | 135, 383, 485 |
| StyD4I | CCNGG | 1 cut(s) | 146 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TaaI | ACNGT | 3 cut(s) | 252, 406, 467 |
| TaiI | ACGT | 1 cut(s) | 636 |
| TaqI | TCGA | 2 cut(s) | 533, 556 |
| TasI | AATT | 6 cut(s) | 224, 302, 314, 369, 386, 472 |
| TatI | WGTACW | 1 cut(s) | 137 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 2 cut(s) | 372, 600 |
| Tru9I | TTAA | 2 cut(s) | 372, 600 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| TseI | GCWGC | 2 cut(s) | 116, 165 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspDTI | ATGAA | 3 cut(s) | 295, 306, 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 210 |
| XapI | RAATTY | 3 cut(s) | 302, 314, 472 |
| XceI | RCATGY | 2 cut(s) | 356, 551 |
| XspI | CTAG | 3 cut(s) | 135, 383, 485 |
| ZrmI | AGTACT | 1 cut(s) | 139 |
| Zsp2I | ATGCAT | 1 cut(s) | 354 |