Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UbiA | PF01040 | 117 - 381 | 8e-37 | UbiA prenyltransferase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 713 |
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AciI | CCGC | 2 cut(s) | 701, 886 |
| AclWI | GGATC | 1 cut(s) | 254 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 726 |
| AgsI | TTSAA | 3 cut(s) | 96, 604, 785 |
| AjnI | CCWGG | 1 cut(s) | 1073 |
| AluBI | AGCT | 7 cut(s) | 7, 242, 248, 338, 770, 798, 1023 |
| AluI | AGCT | 7 cut(s) | 7, 242, 248, 338, 770, 798, 1023 |
| Alw21I | GWGCWC | 3 cut(s) | 9, 800, 1083 |
| Alw26I | GTCTC | 1 cut(s) | 58 |
| AlwI | GGATC | 1 cut(s) | 254 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 581 |
| Ama87I | CYCGRG | 1 cut(s) | 1082 |
| AoxI | GGCC | 5 cut(s) | 212, 228, 314, 583, 611 |
| ApeKI | GCWGC | 5 cut(s) | 248, 524, 770, 989, 1020 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| AspLEI | GCGC | 1 cut(s) | 1020 |
| AspS9I | GGNCC | 4 cut(s) | 228, 315, 611, 883 |
| AsuHPI | GGTGA | 2 cut(s) | 370, 856 |
| AvaI | CYCGRG | 1 cut(s) | 1082 |
| AvaII | GGWCC | 1 cut(s) | 883 |
| AxyI | CCTNAGG | 1 cut(s) | 311 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BanII | GRGCYC | 2 cut(s) | 9, 800 |
| Bbv12I | GWGCWC | 3 cut(s) | 9, 800, 1083 |
| BbvI | GCAGC | 5 cut(s) | 235, 536, 757, 1001, 1032 |
| BccI | CCATC | 2 cut(s) | 230, 665 |
| BciT130I | CCWGG | 1 cut(s) | 1075 |
| BcoDI | GTCTC | 1 cut(s) | 58 |
| BfaI | CTAG | 2 cut(s) | 765, 1177 |
| BfmI | CTRYAG | 2 cut(s) | 232, 1123 |
| BglII | AGATCT | 2 cut(s) | 532, 862 |
| BisI | GCNGC | 6 cut(s) | 249, 525, 702, 771, 990, 1021 |
| BlsI | GCNGC | 6 cut(s) | 250, 526, 703, 772, 991, 1022 |
| Bme1390I | CCNGG | 1 cut(s) | 1075 |
| Bme18I | GGWCC | 1 cut(s) | 883 |
| BmeT110I | CYCGRG | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 4 cut(s) | 228, 315, 611, 883 |
| BmiI | GGNNCC | 3 cut(s) | 317, 655, 884 |
| BmrFI | CCNGG | 1 cut(s) | 1075 |
| BmsI | GCATC | 2 cut(s) | 283, 474 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 759, 791, 782, 814 |
| BsaJI | CCNNGG | 5 cut(s) | 649, 720, 775, 943, 1074 |
| BsaWI | WCCGGW | 1 cut(s) | 262 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 726 |
| Bse21I | CCTNAGG | 1 cut(s) | 311 |
| Bse3DI | GCAATG | 2 cut(s) | 58, 1110 |
| BseBI | CCWGG | 1 cut(s) | 1075 |
| BseDI | CCNNGG | 5 cut(s) | 649, 720, 775, 943, 1074 |
| BseGI | GGATG | 1 cut(s) | 191 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BseMI | GCAATG | 2 cut(s) | 58, 1110 |
| BseMII | CTCAG | 1 cut(s) | 302 |
| BseRI | GAGGAG | 3 cut(s) | 16, 19, 22 |
| BseXI | GCAGC | 5 cut(s) | 235, 536, 757, 1001, 1032 |
| BseYI | CCCAGC | 1 cut(s) | 251 |
| BshFI | GGCC | 5 cut(s) | 214, 230, 316, 585, 613 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BsiHKAI | GWGCWC | 3 cut(s) | 9, 800, 1083 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1082 |
| BsiSI | CCGG | 1 cut(s) | 263 |
| BslFI | GGGAC | 1 cut(s) | 896 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BsmAI | GTCTC | 1 cut(s) | 58 |
| BsmFI | GGGAC | 1 cut(s) | 896 |
| BsmI | GAATGC | 3 cut(s) | 416, 704, 1010 |
| BsnI | GGCC | 5 cut(s) | 214, 230, 316, 585, 613 |
| BsoBI | CYCGRG | 1 cut(s) | 1082 |
| Bsp1286I | GDGCHC | 3 cut(s) | 9, 800, 1083 |
| Bsp143I | GATC | 3 cut(s) | 259, 532, 862 |
| BspACI | CCGC | 2 cut(s) | 701, 886 |
| BspANI | GGCC | 5 cut(s) | 214, 230, 316, 585, 613 |
| BspCNI | CTCAG | 1 cut(s) | 303 |
| BspLI | GGNNCC | 3 cut(s) | 317, 655, 884 |
| BspMAI | CTGCAG | 1 cut(s) | 236 |
| BspPI | GGATC | 1 cut(s) | 254 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrDI | GCAATG | 2 cut(s) | 58, 1110 |
| BssECI | CCNNGG | 5 cut(s) | 649, 720, 775, 943, 1074 |
| BssMI | GATC | 3 cut(s) | 259, 532, 862 |
| BssT1I | CCWWGG | 2 cut(s) | 649, 943 |
| Bst2UI | CCWGG | 1 cut(s) | 1075 |
| Bst4CI | ACNGT | 2 cut(s) | 635, 724 |
| Bst6I | CTCTTC | 3 cut(s) | 40, 85, 680 |
| BstC8I | GCNNGC | 4 cut(s) | 232, 270, 583, 1089 |
| BstDEI | CTNAG | 2 cut(s) | 311, 1101 |
| BstDSI | CCRYGG | 1 cut(s) | 720 |
| BstF5I | GGATG | 1 cut(s) | 191 |
| BstHHI | GCGC | 1 cut(s) | 1020 |
| BstKTI | GATC | 3 cut(s) | 262, 535, 865 |
| BstMAI | GTCTC | 1 cut(s) | 58 |
| BstMBI | GATC | 3 cut(s) | 259, 532, 862 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 248, 767 |
| BstNI | CCWGG | 1 cut(s) | 1075 |
| BstNSI | RCATGY | 1 cut(s) | 183 |
| BstSCI | CCNGG | 1 cut(s) | 1073 |
| BstSFI | CTRYAG | 2 cut(s) | 232, 1123 |
| BstV1I | GCAGC | 5 cut(s) | 235, 536, 757, 1001, 1032 |
| BstX2I | RGATCY | 2 cut(s) | 532, 862 |
| BstYI | RGATCY | 2 cut(s) | 532, 862 |
| Bsu36I | CCTNAGG | 1 cut(s) | 311 |
| BsuRI | GGCC | 5 cut(s) | 214, 230, 316, 585, 613 |
| BtgI | CCRYGG | 1 cut(s) | 720 |
| BtsCI | GGATG | 1 cut(s) | 191 |
| Cac8I | GCNNGC | 4 cut(s) | 232, 270, 583, 1089 |
| CaiI | CAGNNNCTG | 1 cut(s) | 581 |
| CfoI | GCGC | 1 cut(s) | 1020 |
| Cfr13I | GGNCC | 4 cut(s) | 228, 315, 611, 883 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 773, 808 |
| CviAII | CATG | 3 cut(s) | 180, 552, 1000 |
| DdeI | CTNAG | 2 cut(s) | 311, 1101 |
| DpnI | GATC | 3 cut(s) | 261, 534, 864 |
| DpnII | GATC | 3 cut(s) | 259, 532, 862 |
| DraI | TTTAAA | 1 cut(s) | 289 |
| Eam1104I | CTCTTC | 3 cut(s) | 40, 85, 680 |
| EarI | CTCTTC | 3 cut(s) | 40, 85, 680 |
| Ecl136II | GAGCTC | 2 cut(s) | 7, 798 |
| Eco130I | CCWWGG | 2 cut(s) | 649, 943 |
| Eco24I | GRGCYC | 2 cut(s) | 9, 800 |
| Eco32I | GATATC | 2 cut(s) | 484, 900 |
| Eco47I | GGWCC | 1 cut(s) | 883 |
| Eco53kI | GAGCTC | 2 cut(s) | 7, 798 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| Eco81I | CCTNAGG | 1 cut(s) | 311 |
| Eco88I | CYCGRG | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 2 cut(s) | 7, 798 |
| EcoO109I | RGGNCCY | 1 cut(s) | 315 |
| EcoRII | CCWGG | 1 cut(s) | 1073 |
| EcoRV | GATATC | 2 cut(s) | 484, 900 |
| EcoT14I | CCWWGG | 2 cut(s) | 649, 943 |
| EcoT38I | GRGCYC | 2 cut(s) | 9, 800 |
| ErhI | CCWWGG | 2 cut(s) | 649, 943 |
| FaeI | CATG | 3 cut(s) | 183, 555, 1003 |
| FaqI | GGGAC | 1 cut(s) | 896 |
| FatI | CATG | 3 cut(s) | 179, 551, 999 |
| FauNDI | CATATG | 1 cut(s) | 1133 |
| Fnu4HI | GCNGC | 6 cut(s) | 249, 525, 702, 771, 990, 1021 |
| FokI | GGATG | 1 cut(s) | 178 |
| FriOI | GRGCYC | 2 cut(s) | 9, 800 |
| Fsp4HI | GCNGC | 6 cut(s) | 249, 525, 702, 771, 990, 1021 |
| FspBI | CTAG | 2 cut(s) | 765, 1177 |
| GlaI | GCGC | 1 cut(s) | 1019 |
| GluI | GCNGC | 6 cut(s) | 249, 525, 702, 771, 990, 1021 |
| GsaI | CCCAGC | 1 cut(s) | 255 |
| HaeIII | GGCC | 5 cut(s) | 214, 230, 316, 585, 613 |
| HapII | CCGG | 1 cut(s) | 263 |
| HhaI | GCGC | 1 cut(s) | 1020 |
| Hin1II | CATG | 3 cut(s) | 183, 555, 1003 |
| Hin6I | GCGC | 1 cut(s) | 1018 |
| HinP1I | GCGC | 1 cut(s) | 1018 |
| HincII | GTYRAC | 1 cut(s) | 348 |
| HindII | GTYRAC | 1 cut(s) | 348 |
| HinfI | GANTC | 5 cut(s) | 46, 51, 306, 600, 1138 |
| HpaII | CCGG | 1 cut(s) | 263 |
| HphI | GGTGA | 2 cut(s) | 370, 856 |
| Hpy166II | GTNNAC | 3 cut(s) | 348, 399, 502 |
| Hpy188I | TCNGA | 6 cut(s) | 45, 259, 474, 779, 897, 1071 |
| Hpy188III | TCNNGA | 2 cut(s) | 310, 869 |
| Hpy8I | GTNNAC | 3 cut(s) | 348, 399, 502 |
| Hpy99I | CGWCG | 1 cut(s) | 809 |
| HpyAV | CCTTC | 5 cut(s) | 30, 99, 746, 832, 949 |
| HpyCH4III | ACNGT | 2 cut(s) | 635, 724 |
| HpyCH4V | TGCA | 6 cut(s) | 63, 147, 234, 575, 911, 1151 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 248, 767 |
| HpyF3I | CTNAG | 2 cut(s) | 311, 1101 |
| Hsp92II | CATG | 3 cut(s) | 183, 555, 1003 |
| HspAI | GCGC | 1 cut(s) | 1018 |
| Kzo9I | GATC | 3 cut(s) | 259, 532, 862 |
| LmnI | GCTCC | 4 cut(s) | 4, 22, 795, 803 |
| Lsp1109I | GCAGC | 5 cut(s) | 235, 536, 757, 1001, 1032 |
| LweI | GCATC | 2 cut(s) | 283, 474 |
| MaeI | CTAG | 2 cut(s) | 765, 1177 |
| MaeIII | GTNAC | 4 cut(s) | 100, 358, 826, 1094 |
| MalI | GATC | 3 cut(s) | 261, 534, 864 |
| MboI | GATC | 3 cut(s) | 259, 532, 862 |
| MboII | GAAGA | 6 cut(s) | 27, 72, 84, 123, 697, 857 |
| MfeI | CAATTG | 1 cut(s) | 96 |
| MflI | RGATCY | 2 cut(s) | 532, 862 |
| MhlI | GDGCHC | 3 cut(s) | 9, 800, 1083 |
| MluCI | AATT | 8 cut(s) | 96, 217, 489, 714, 742, 785, 933, 967 |
| MlyI | GAGTC | 1 cut(s) | 60 |
| MmeI | TCCRAC | 3 cut(s) | 183, 281, 577 |
| MseI | TTAA | 4 cut(s) | 288, 411, 741, 1025 |
| MspI | CCGG | 1 cut(s) | 263 |
| MspR9I | CCNGG | 1 cut(s) | 1075 |
| MunI | CAATTG | 1 cut(s) | 96 |
| Mva1269I | GAATGC | 3 cut(s) | 416, 704, 1010 |
| MvaI | CCWGG | 1 cut(s) | 1075 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 248, 767 |
| NdeI | CATATG | 1 cut(s) | 1133 |
| NdeII | GATC | 3 cut(s) | 259, 532, 862 |
| NlaIII | CATG | 3 cut(s) | 183, 555, 1003 |
| NlaIV | GGNNCC | 3 cut(s) | 317, 655, 884 |
| NmuCI | GTSAC | 2 cut(s) | 100, 358 |
| NspI | RCATGY | 1 cut(s) | 183 |
| PaeR7I | CTCGAG | 1 cut(s) | 1082 |
| PctI | GAATGC | 3 cut(s) | 416, 704, 1010 |
| PfeI | GAWTC | 4 cut(s) | 46, 306, 600, 1138 |
| PkrI | GCNGC | 6 cut(s) | 250, 526, 703, 772, 991, 1022 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| PsiI | TTATAA | 1 cut(s) | 713 |
| Psp124BI | GAGCTC | 2 cut(s) | 9, 800 |
| Psp6I | CCWGG | 1 cut(s) | 1073 |
| PspFI | CCCAGC | 1 cut(s) | 251 |
| PspGI | CCWGG | 1 cut(s) | 1073 |
| PspN4I | GGNNCC | 3 cut(s) | 317, 655, 884 |
| PspPI | GGNCC | 4 cut(s) | 228, 315, 611, 883 |
| PspXI | VCTCGAGB | 1 cut(s) | 1082 |
| PstI | CTGCAG | 1 cut(s) | 236 |
| PstNI | CAGNNNCTG | 1 cut(s) | 581 |
| PsuI | RGATCY | 2 cut(s) | 532, 862 |
| SacI | GAGCTC | 2 cut(s) | 9, 800 |
| SaqAI | TTAA | 4 cut(s) | 288, 411, 741, 1025 |
| SatI | GCNGC | 6 cut(s) | 249, 525, 702, 771, 990, 1021 |
| Sau3AI | GATC | 3 cut(s) | 259, 532, 862 |
| Sau96I | GGNCC | 4 cut(s) | 228, 315, 611, 883 |
| SchI | GAGTC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 1 cut(s) | 1075 |
| SduI | GDGCHC | 3 cut(s) | 9, 800, 1083 |
| SfaNI | GCATC | 2 cut(s) | 283, 474 |
| SfcI | CTRYAG | 2 cut(s) | 232, 1123 |
| Sfr274I | CTCGAG | 1 cut(s) | 1082 |
| SinI | GGWCC | 1 cut(s) | 883 |
| SlaI | CTCGAG | 1 cut(s) | 1082 |
| SmlI | CTYRAG | 1 cut(s) | 1082 |
| SmoI | CTYRAG | 1 cut(s) | 1082 |
| Sse9I | AATT | 8 cut(s) | 96, 217, 489, 714, 742, 785, 933, 967 |
| SsiI | CCGC | 2 cut(s) | 701, 886 |
| SspI | AATATT | 1 cut(s) | 1047 |
| SspMI | CTAG | 2 cut(s) | 765, 1177 |
| SstI | GAGCTC | 2 cut(s) | 9, 800 |
| StyD4I | CCNGG | 1 cut(s) | 1073 |
| StyI | CCWWGG | 2 cut(s) | 649, 943 |
| TaaI | ACNGT | 2 cut(s) | 635, 724 |
| TaqI | TCGA | 2 cut(s) | 49, 1083 |
| TasI | AATT | 8 cut(s) | 96, 217, 489, 714, 742, 785, 933, 967 |
| TauI | GCSGC | 1 cut(s) | 704 |
| TfiI | GAWTC | 4 cut(s) | 46, 306, 600, 1138 |
| Tru1I | TTAA | 4 cut(s) | 288, 411, 741, 1025 |
| Tru9I | TTAA | 4 cut(s) | 288, 411, 741, 1025 |
| TseFI | GTSAC | 2 cut(s) | 100, 358 |
| TseI | GCWGC | 5 cut(s) | 248, 524, 770, 989, 1020 |
| Tsp45I | GTSAC | 2 cut(s) | 100, 358 |
| TspDTI | ATGAA | 5 cut(s) | 607, 698, 988, 1120, 1162 |
| VpaK11BI | GGWCC | 1 cut(s) | 883 |
| XapI | RAATTY | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 183 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 222 |
| XhoI | CTCGAG | 1 cut(s) | 1082 |
| XspI | CTAG | 2 cut(s) | 765, 1177 |