Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 112 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| AluBI | AGCT | 3 cut(s) | 180, 188, 261 |
| AluI | AGCT | 3 cut(s) | 180, 188, 261 |
| Alw21I | GWGCWC | 1 cut(s) | 281 |
| Alw26I | GTCTC | 1 cut(s) | 46 |
| Alw44I | GTGCAC | 1 cut(s) | 277 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApaLI | GTGCAC | 1 cut(s) | 277 |
| ApeKI | GCWGC | 3 cut(s) | 116, 214, 217 |
| AspS9I | GGNCC | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AsuII | TTCGAA | 1 cut(s) | 183 |
| BaeGI | GKGCMC | 1 cut(s) | 281 |
| BanII | GRGCYC | 2 cut(s) | 127, 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 281 |
| BbvI | GCAGC | 3 cut(s) | 103, 226, 229 |
| BccI | CCATC | 1 cut(s) | 62 |
| BceAI | ACGGC | 1 cut(s) | 259 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BcoDI | GTCTC | 1 cut(s) | 46 |
| BfaI | CTAG | 1 cut(s) | 147 |
| BglII | AGATCT | 1 cut(s) | 28 |
| BisI | GCNGC | 3 cut(s) | 117, 215, 218 |
| BlpI | GCTNAGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 3 cut(s) | 118, 216, 219 |
| Bme1390I | CCNGG | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 1 cut(s) | 51 |
| BmrFI | CCNGG | 1 cut(s) | 307 |
| BmsI | GCATC | 1 cut(s) | 289 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 228 |
| Bpu14I | TTCGAA | 1 cut(s) | 183 |
| BsaI | GGTCTC | 1 cut(s) | 46 |
| BsaWI | WCCGGW | 1 cut(s) | 57 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 190, 220 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseGI | GGATG | 3 cut(s) | 10, 54, 304 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 219 |
| BseSI | GKGCMC | 1 cut(s) | 281 |
| BseXI | GCAGC | 3 cut(s) | 103, 226, 229 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 1 cut(s) | 281 |
| BsiSI | CCGG | 1 cut(s) | 58 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmAI | GTCTC | 1 cut(s) | 46 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bso31I | GGTCTC | 1 cut(s) | 46 |
| Bsp119I | TTCGAA | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 3 cut(s) | 127, 234, 281 |
| Bsp143I | GATC | 1 cut(s) | 28 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 228 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 220 |
| BspT104I | TTCGAA | 1 cut(s) | 183 |
| BspTNI | GGTCTC | 1 cut(s) | 46 |
| BssMI | GATC | 1 cut(s) | 28 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| BstBI | TTCGAA | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 1 cut(s) | 158 |
| BstDEI | CTNAG | 1 cut(s) | 228 |
| BstF5I | GGATG | 3 cut(s) | 10, 54, 304 |
| BstKTI | GATC | 1 cut(s) | 31 |
| BstMAI | GTCTC | 1 cut(s) | 46 |
| BstMBI | GATC | 1 cut(s) | 28 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 162 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstNSI | RCATGY | 1 cut(s) | 160 |
| BstSCI | CCNGG | 1 cut(s) | 305 |
| BstSLI | GKGCMC | 1 cut(s) | 281 |
| BstV1I | GCAGC | 3 cut(s) | 103, 226, 229 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtsCI | GGATG | 3 cut(s) | 10, 54, 304 |
| Cac8I | GCNNGC | 1 cut(s) | 158 |
| Cfr13I | GGNCC | 1 cut(s) | 51 |
| CsiI | ACCWGGT | 1 cut(s) | 305 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 120, 157 |
| CviJI | RGCY | 8 cut(s) | 53, 116, 125, 180, 188, 232, 261, 274 |
| CviKI_1 | RGCY | 8 cut(s) | 53, 116, 125, 180, 188, 232, 261, 274 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 228 |
| DpnI | GATC | 1 cut(s) | 30 |
| DpnII | GATC | 1 cut(s) | 28 |
| DraI | TTTAAA | 1 cut(s) | 241 |
| Eco24I | GRGCYC | 2 cut(s) | 127, 234 |
| Eco31I | GGTCTC | 1 cut(s) | 46 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| EcoT38I | GRGCYC | 2 cut(s) | 127, 234 |
| FaeI | CATG | 2 cut(s) | 123, 160 |
| FaiI | YATR | 8 cut(s) | 75, 77, 102, 113, 121, 158, 203, 255 |
| FatI | CATG | 2 cut(s) | 119, 156 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 215, 218 |
| FokI | GGATG | 3 cut(s) | 17, 41, 311 |
| FriOI | GRGCYC | 2 cut(s) | 127, 234 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 215, 218 |
| FspBI | CTAG | 1 cut(s) | 147 |
| GluI | GCNGC | 3 cut(s) | 117, 215, 218 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 58 |
| Hin1II | CATG | 2 cut(s) | 123, 160 |
| HinfI | GANTC | 1 cut(s) | 70 |
| HpaII | CCGG | 1 cut(s) | 58 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 2 cut(s) | 247, 279 |
| Hpy188I | TCNGA | 1 cut(s) | 12 |
| Hpy188III | TCNNGA | 2 cut(s) | 139, 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 247, 279 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4V | TGCA | 4 cut(s) | 119, 156, 214, 279 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 162 |
| HpyF3I | CTNAG | 1 cut(s) | 228 |
| Hsp92II | CATG | 2 cut(s) | 123, 160 |
| Kzo9I | GATC | 1 cut(s) | 28 |
| LpnPI | CCDG | 3 cut(s) | 71, 250, 292 |
| Lsp1109I | GCAGC | 3 cut(s) | 103, 226, 229 |
| LweI | GCATC | 1 cut(s) | 289 |
| MabI | ACCWGGT | 1 cut(s) | 305 |
| MaeI | CTAG | 1 cut(s) | 147 |
| MalI | GATC | 1 cut(s) | 30 |
| MboI | GATC | 1 cut(s) | 28 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MhlI | GDGCHC | 3 cut(s) | 127, 234, 281 |
| MluCI | AATT | 1 cut(s) | 208 |
| MnlI | CCTC | 1 cut(s) | 163 |
| MseI | TTAA | 1 cut(s) | 240 |
| MspI | CCGG | 1 cut(s) | 58 |
| MspR9I | CCNGG | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 162 |
| NdeII | GATC | 1 cut(s) | 28 |
| NlaIII | CATG | 2 cut(s) | 123, 160 |
| NspI | RCATGY | 1 cut(s) | 160 |
| NspV | TTCGAA | 1 cut(s) | 183 |
| PaeI | GCATGC | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 70 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 112 |
| PkrI | GCNGC | 3 cut(s) | 118, 216, 219 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspPI | GGNCC | 1 cut(s) | 51 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| SaqAI | TTAA | 1 cut(s) | 240 |
| SatI | GCNGC | 3 cut(s) | 117, 215, 218 |
| Sau3AI | GATC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 1 cut(s) | 51 |
| ScrFI | CCNGG | 1 cut(s) | 307 |
| SduI | GDGCHC | 3 cut(s) | 127, 234, 281 |
| SetI | ASST | 4 cut(s) | 182, 190, 263, 311 |
| SexAI | ACCWGGT | 1 cut(s) | 305 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SfuI | TTCGAA | 1 cut(s) | 183 |
| SphI | GCATGC | 1 cut(s) | 160 |
| Sse9I | AATT | 1 cut(s) | 208 |
| SspMI | CTAG | 1 cut(s) | 147 |
| StyD4I | CCNGG | 1 cut(s) | 305 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaqI | TCGA | 2 cut(s) | 140, 183 |
| TasI | AATT | 1 cut(s) | 208 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TfiI | GAWTC | 1 cut(s) | 70 |
| Tru1I | TTAA | 1 cut(s) | 240 |
| Tru9I | TTAA | 1 cut(s) | 240 |
| TseI | GCWGC | 3 cut(s) | 116, 214, 217 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 112 |
| VneI | GTGCAC | 1 cut(s) | 277 |
| XceI | RCATGY | 1 cut(s) | 160 |
| XspI | CTAG | 1 cut(s) | 147 |