Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 568 |
| AciI | CCGC | 2 cut(s) | 26, 101 |
| AcoI | YGGCCR | 1 cut(s) | 655 |
| AcsI | RAATTY | 2 cut(s) | 303, 409 |
| AcuI | CTGAAG | 1 cut(s) | 683 |
| AfaI | GTAC | 1 cut(s) | 482 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 653 |
| AgsI | TTSAA | 4 cut(s) | 77, 337, 374, 433 |
| AjnI | CCWGG | 1 cut(s) | 588 |
| AluBI | AGCT | 2 cut(s) | 82, 379 |
| AluI | AGCT | 2 cut(s) | 82, 379 |
| Alw21I | GWGCWC | 1 cut(s) | 131 |
| Ama87I | CYCGRG | 1 cut(s) | 241 |
| AoxI | GGCC | 1 cut(s) | 655 |
| ApeKI | GCWGC | 1 cut(s) | 296 |
| ApoI | RAATTY | 2 cut(s) | 303, 409 |
| AspLEI | GCGC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 2 cut(s) | 528, 624 |
| AsuHPI | GGTGA | 5 cut(s) | 56, 81, 476, 578, 587 |
| AvaI | CYCGRG | 1 cut(s) | 241 |
| AvaII | GGWCC | 2 cut(s) | 528, 624 |
| BalI | TGGCCA | 1 cut(s) | 657 |
| Bbv12I | GWGCWC | 1 cut(s) | 131 |
| BbvI | GCAGC | 1 cut(s) | 283 |
| BccI | CCATC | 4 cut(s) | 35, 637, 666, 698 |
| BciT130I | CCWGG | 1 cut(s) | 590 |
| BfaI | CTAG | 4 cut(s) | 132, 152, 210, 416 |
| BglII | AGATCT | 1 cut(s) | 31 |
| BisI | GCNGC | 1 cut(s) | 297 |
| BlsI | GCNGC | 1 cut(s) | 298 |
| Bme1390I | CCNGG | 1 cut(s) | 590 |
| Bme18I | GGWCC | 2 cut(s) | 528, 624 |
| BmeT110I | CYCGRG | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 2 cut(s) | 528, 624 |
| BmiI | GGNNCC | 3 cut(s) | 529, 530, 626 |
| BmrFI | CCNGG | 1 cut(s) | 590 |
| BmsI | GCATC | 3 cut(s) | 310, 347, 529 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 71, 103 |
| BpmI | CTGGAG | 1 cut(s) | 720 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 41, 71 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 653 |
| Bse1I | ACTGG | 2 cut(s) | 284, 607 |
| BseBI | CCWGG | 1 cut(s) | 590 |
| BseGI | GGATG | 1 cut(s) | 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 653 |
| BseMII | CTCAG | 1 cut(s) | 557 |
| BseNI | ACTGG | 2 cut(s) | 284, 607 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseXI | GCAGC | 1 cut(s) | 283 |
| BshFI | GGCC | 1 cut(s) | 657 |
| BsiHKAI | GWGCWC | 1 cut(s) | 131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 241 |
| BslFI | GGGAC | 1 cut(s) | 541 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 653 |
| BsmFI | GGGAC | 1 cut(s) | 541 |
| BsnI | GGCC | 1 cut(s) | 657 |
| BsoBI | CYCGRG | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 131 |
| Bsp143I | GATC | 3 cut(s) | 31, 145, 666 |
| BspACI | CCGC | 2 cut(s) | 26, 101 |
| BspANI | GGCC | 1 cut(s) | 657 |
| BspCNI | CTCAG | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 529, 530, 626 |
| BspQI | GCTCTTC | 2 cut(s) | 72, 208 |
| BsrI | ACTGG | 2 cut(s) | 284, 607 |
| BssMI | GATC | 3 cut(s) | 31, 145, 666 |
| Bst2UI | CCWGG | 1 cut(s) | 590 |
| Bst4CI | ACNGT | 2 cut(s) | 176, 400 |
| Bst6I | CTCTTC | 4 cut(s) | 72, 208, 608, 614 |
| BstC8I | GCNNGC | 1 cut(s) | 343 |
| BstDEI | CTNAG | 2 cut(s) | 543, 633 |
| BstEII | GGTNACC | 1 cut(s) | 197 |
| BstF5I | GGATG | 1 cut(s) | 448 |
| BstHHI | GCGC | 1 cut(s) | 507 |
| BstKTI | GATC | 3 cut(s) | 34, 148, 669 |
| BstMBI | GATC | 3 cut(s) | 31, 145, 666 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 215, 454, 560 |
| BstNI | CCWGG | 1 cut(s) | 590 |
| BstNSI | RCATGY | 2 cut(s) | 332, 345 |
| BstPI | GGTNACC | 1 cut(s) | 197 |
| BstSCI | CCNGG | 1 cut(s) | 588 |
| BstV1I | GCAGC | 1 cut(s) | 283 |
| BstX2I | RGATCY | 1 cut(s) | 31 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 636 |
| BstYI | RGATCY | 1 cut(s) | 31 |
| BsuRI | GGCC | 1 cut(s) | 657 |
| BtsCI | GGATG | 1 cut(s) | 448 |
| BtsI | GCAGTG | 1 cut(s) | 225 |
| BtsIMutI | CAGTG | 1 cut(s) | 225 |
| Cac8I | GCNNGC | 1 cut(s) | 343 |
| CfoI | GCGC | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 2 cut(s) | 528, 624 |
| CsiI | ACCWGGT | 1 cut(s) | 588 |
| Csp6I | GTAC | 1 cut(s) | 481 |
| CviAII | CATG | 8 cut(s) | 203, 257, 325, 329, 342, 385, 404, 458 |
| CviJI | RGCY | 8 cut(s) | 82, 106, 296, 379, 392, 491, 641, 657 |
| CviKI_1 | RGCY | 8 cut(s) | 82, 106, 296, 379, 392, 491, 641, 657 |
| CviQI | GTAC | 1 cut(s) | 481 |
| DdeI | CTNAG | 2 cut(s) | 543, 633 |
| DpnI | GATC | 3 cut(s) | 33, 147, 668 |
| DpnII | GATC | 3 cut(s) | 31, 145, 666 |
| EaeI | YGGCCR | 1 cut(s) | 655 |
| Eam1104I | CTCTTC | 4 cut(s) | 72, 208, 608, 614 |
| EarI | CTCTTC | 4 cut(s) | 72, 208, 608, 614 |
| EciI | GGCGGA | 1 cut(s) | 41 |
| Eco47I | GGWCC | 2 cut(s) | 528, 624 |
| Eco57I | CTGAAG | 1 cut(s) | 683 |
| Eco88I | CYCGRG | 1 cut(s) | 241 |
| Eco91I | GGTNACC | 1 cut(s) | 197 |
| EcoO109I | RGGNCCY | 2 cut(s) | 528, 624 |
| EcoO65I | GGTNACC | 1 cut(s) | 197 |
| EcoRI | GAATTC | 1 cut(s) | 303 |
| EcoRII | CCWGG | 1 cut(s) | 588 |
| EcoT22I | ATGCAT | 1 cut(s) | 330 |
| FaeI | CATG | 8 cut(s) | 206, 260, 328, 332, 345, 388, 407, 461 |
| FaqI | GGGAC | 1 cut(s) | 541 |
| FatI | CATG | 8 cut(s) | 202, 256, 324, 328, 341, 384, 403, 457 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 1 cut(s) | 297 |
| FokI | GGATG | 1 cut(s) | 455 |
| Fsp4HI | GCNGC | 1 cut(s) | 297 |
| FspBI | CTAG | 4 cut(s) | 132, 152, 210, 416 |
| GlaI | GCGC | 1 cut(s) | 506 |
| GluI | GCNGC | 1 cut(s) | 297 |
| GsuI | CTGGAG | 1 cut(s) | 720 |
| HaeIII | GGCC | 1 cut(s) | 657 |
| HhaI | GCGC | 1 cut(s) | 507 |
| Hin1II | CATG | 8 cut(s) | 206, 260, 328, 332, 345, 388, 407, 461 |
| Hin6I | GCGC | 1 cut(s) | 505 |
| HinP1I | GCGC | 1 cut(s) | 505 |
| HincII | GTYRAC | 1 cut(s) | 676 |
| HindII | GTYRAC | 1 cut(s) | 676 |
| HindIII | AAGCTT | 1 cut(s) | 377 |
| HinfI | GANTC | 3 cut(s) | 283, 570, 695 |
| HphI | GGTGA | 5 cut(s) | 56, 81, 476, 578, 587 |
| Hpy166II | GTNNAC | 4 cut(s) | 481, 569, 595, 676 |
| Hpy188I | TCNGA | 4 cut(s) | 546, 651, 663, 694 |
| Hpy188III | TCNNGA | 2 cut(s) | 416, 699 |
| Hpy8I | GTNNAC | 4 cut(s) | 481, 569, 595, 676 |
| HpyAV | CCTTC | 2 cut(s) | 382, 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 176, 400 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 5 cut(s) | 299, 328, 345, 403, 457 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 215, 454, 560 |
| HpyF3I | CTNAG | 2 cut(s) | 543, 633 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92II | CATG | 8 cut(s) | 206, 260, 328, 332, 345, 388, 407, 461 |
| HspAI | GCGC | 1 cut(s) | 505 |
| KflI | GGGWCCC | 1 cut(s) | 528 |
| Kzo9I | GATC | 3 cut(s) | 31, 145, 666 |
| LguI | GCTCTTC | 2 cut(s) | 72, 208 |
| LmnI | GCTCC | 1 cut(s) | 263 |
| LpnPI | CCDG | 5 cut(s) | 265, 575, 588, 602, 684 |
| Lsp1109I | GCAGC | 1 cut(s) | 283 |
| LweI | GCATC | 3 cut(s) | 310, 347, 529 |
| MabI | ACCWGGT | 1 cut(s) | 588 |
| MaeI | CTAG | 4 cut(s) | 132, 152, 210, 416 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MaeIII | GTNAC | 3 cut(s) | 69, 197, 349 |
| MalI | GATC | 3 cut(s) | 33, 147, 668 |
| MboI | GATC | 3 cut(s) | 31, 145, 666 |
| MboII | GAAGA | 9 cut(s) | 41, 89, 225, 285, 329, 431, 625, 631, 676 |
| MflI | RGATCY | 1 cut(s) | 31 |
| MhlI | GDGCHC | 1 cut(s) | 131 |
| MlsI | TGGCCA | 1 cut(s) | 657 |
| MluCI | AATT | 4 cut(s) | 232, 303, 409, 533 |
| MluNI | TGGCCA | 1 cut(s) | 657 |
| MlyI | GAGTC | 1 cut(s) | 564 |
| Mox20I | TGGCCA | 1 cut(s) | 657 |
| Mph1103I | ATGCAT | 1 cut(s) | 330 |
| MscI | TGGCCA | 1 cut(s) | 657 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 2 cut(s) | 462, 634 |
| Msp20I | TGGCCA | 1 cut(s) | 657 |
| MspR9I | CCNGG | 1 cut(s) | 590 |
| MvaI | CCWGG | 1 cut(s) | 590 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 215, 454, 560 |
| NdeII | GATC | 3 cut(s) | 31, 145, 666 |
| NlaIII | CATG | 8 cut(s) | 206, 260, 328, 332, 345, 388, 407, 461 |
| NlaIV | GGNNCC | 3 cut(s) | 529, 530, 626 |
| NmuCI | GTSAC | 2 cut(s) | 69, 349 |
| NsiI | ATGCAT | 1 cut(s) | 330 |
| NspI | RCATGY | 2 cut(s) | 332, 345 |
| PaeI | GCATGC | 1 cut(s) | 345 |
| PaeR7I | CTCGAG | 1 cut(s) | 241 |
| PciSI | GCTCTTC | 2 cut(s) | 72, 208 |
| PfeI | GAWTC | 2 cut(s) | 283, 695 |
| PkrI | GCNGC | 1 cut(s) | 298 |
| PleI | GAGTC | 1 cut(s) | 564 |
| PpsI | GAGTC | 1 cut(s) | 564 |
| PpuMI | RGGWCCY | 2 cut(s) | 528, 624 |
| Psp5II | RGGWCCY | 2 cut(s) | 528, 624 |
| Psp6I | CCWGG | 1 cut(s) | 588 |
| PspEI | GGTNACC | 1 cut(s) | 197 |
| PspGI | CCWGG | 1 cut(s) | 588 |
| PspN4I | GGNNCC | 3 cut(s) | 529, 530, 626 |
| PspPI | GGNCC | 2 cut(s) | 528, 624 |
| PspPPI | RGGWCCY | 2 cut(s) | 528, 624 |
| PspXI | VCTCGAGB | 1 cut(s) | 241 |
| PsuI | RGATCY | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 482 |
| RsaNI | GTAC | 1 cut(s) | 481 |
| RseI | CAYNNNNRTG | 2 cut(s) | 462, 634 |
| SapI | GCTCTTC | 2 cut(s) | 72, 208 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 1 cut(s) | 297 |
| Sau3AI | GATC | 3 cut(s) | 31, 145, 666 |
| Sau96I | GGNCC | 2 cut(s) | 528, 624 |
| SchI | GAGTC | 1 cut(s) | 564 |
| ScrFI | CCNGG | 1 cut(s) | 590 |
| SduI | GDGCHC | 1 cut(s) | 131 |
| SetI | ASST | 8 cut(s) | 84, 94, 182, 256, 351, 381, 591, 712 |
| SexAI | ACCWGGT | 1 cut(s) | 588 |
| SfaNI | GCATC | 3 cut(s) | 310, 347, 529 |
| Sfr274I | CTCGAG | 1 cut(s) | 241 |
| SinI | GGWCC | 2 cut(s) | 528, 624 |
| SlaI | CTCGAG | 1 cut(s) | 241 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 462, 634 |
| SmlI | CTYRAG | 1 cut(s) | 241 |
| SmoI | CTYRAG | 1 cut(s) | 241 |
| SphI | GCATGC | 1 cut(s) | 345 |
| Sse9I | AATT | 4 cut(s) | 232, 303, 409, 533 |
| SsiI | CCGC | 2 cut(s) | 26, 101 |
| SspI | AATATT | 1 cut(s) | 514 |
| SspMI | CTAG | 4 cut(s) | 132, 152, 210, 416 |
| StyD4I | CCNGG | 1 cut(s) | 588 |
| TaaI | ACNGT | 2 cut(s) | 176, 400 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqI | TCGA | 1 cut(s) | 242 |
| TasI | AATT | 4 cut(s) | 232, 303, 409, 533 |
| TatI | WGTACW | 1 cut(s) | 480 |
| TfiI | GAWTC | 2 cut(s) | 283, 695 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 1 cut(s) | 225 |
| TseFI | GTSAC | 2 cut(s) | 69, 349 |
| TseI | GCWGC | 1 cut(s) | 296 |
| Tsp45I | GTSAC | 2 cut(s) | 69, 349 |
| TspDTI | ATGAA | 1 cut(s) | 401 |
| TspGWI | ACGGA | 1 cut(s) | 693 |
| TspRI | CASTG | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 2 cut(s) | 528, 624 |
| XapI | RAATTY | 2 cut(s) | 303, 409 |
| XbaI | TCTAGA | 1 cut(s) | 415 |
| XceI | RCATGY | 2 cut(s) | 332, 345 |
| XhoI | CTCGAG | 1 cut(s) | 241 |
| XmiI | GTMKAC | 1 cut(s) | 568 |
| XspI | CTAG | 4 cut(s) | 132, 152, 210, 416 |
| Zsp2I | ATGCAT | 1 cut(s) | 330 |