Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3527 | PF12043 | 322 - 662 | 1.6e-110 | Domain of unknown function (DUF3527) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 896, 1579 |
| Acc65I | GGTACC | 1 cut(s) | 196 |
| AccB1I | GGYRCC | 1 cut(s) | 196 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 449, 1065 |
| AccI | GTMKAC | 3 cut(s) | 109, 1097, 1943 |
| AciI | CCGC | 4 cut(s) | 113, 1073, 1140, 2014 |
| AclWI | GGATC | 9 cut(s) | 500, 513, 545, 572, 752, 1045, 1870, 2131, 2153 |
| AcoI | YGGCCR | 3 cut(s) | 979, 1056, 1454 |
| AcsI | RAATTY | 1 cut(s) | 495 |
| AcuI | CTGAAG | 1 cut(s) | 555 |
| AcvI | CACGTG | 1 cut(s) | 2183 |
| AfaI | GTAC | 7 cut(s) | 198, 414, 441, 897, 1321, 1569, 1987 |
| AfeI | AGCGCT | 1 cut(s) | 173 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 449, 587, 1065, 2013 |
| AflII | CTTAAG | 2 cut(s) | 236, 1583 |
| AflIII | ACRYGT | 3 cut(s) | 1761, 1964, 2182 |
| AgeI | ACCGGT | 1 cut(s) | 964 |
| AjnI | CCWGG | 4 cut(s) | 808, 1058, 1451, 1474 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2060, 2092 |
| Alw21I | GWGCWC | 2 cut(s) | 528, 2157 |
| AlwI | GGATC | 9 cut(s) | 500, 513, 545, 572, 752, 1045, 1870, 2131, 2153 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2009 |
| Aor51HI | AGCGCT | 1 cut(s) | 173 |
| AoxI | GGCC | 5 cut(s) | 455, 726, 979, 1056, 1454 |
| ApeKI | GCWGC | 6 cut(s) | 180, 1295, 1463, 1490, 1837, 2003 |
| ApoI | RAATTY | 1 cut(s) | 495 |
| AsiGI | ACCGGT | 1 cut(s) | 964 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 672 |
| Asp718I | GGTACC | 1 cut(s) | 196 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 3 cut(s) | 590, 727, 1700 |
| AsuC2I | CCSGG | 1 cut(s) | 730 |
| AsuHPI | GGTGA | 7 cut(s) | 395, 954, 962, 1261, 1400, 1663, 2140 |
| AvaII | GGWCC | 2 cut(s) | 590, 1700 |
| BaeGI | GKGCMC | 1 cut(s) | 296 |
| BalI | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BanI | GGYRCC | 1 cut(s) | 196 |
| BbrPI | CACGTG | 1 cut(s) | 2183 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 2 cut(s) | 528, 2157 |
| BbvCI | CCTCAGC | 1 cut(s) | 300 |
| BbvI | GCAGC | 6 cut(s) | 192, 1307, 1475, 1502, 1849, 2015 |
| BceAI | ACGGC | 2 cut(s) | 454, 1094 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1923, 1957 |
| BciT130I | CCWGG | 4 cut(s) | 810, 1060, 1453, 1476 |
| BclI | TGATCA | 1 cut(s) | 1810 |
| BcnI | CCSGG | 1 cut(s) | 730 |
| BfaI | CTAG | 4 cut(s) | 8, 204, 948, 1715 |
| BfoI | RGCGCY | 1 cut(s) | 175 |
| BfrI | CTTAAG | 2 cut(s) | 236, 1583 |
| BfuAI | ACCTGC | 2 cut(s) | 896, 1579 |
| BisI | GCNGC | 6 cut(s) | 181, 1296, 1464, 1491, 1838, 2004 |
| BlsI | GCNGC | 6 cut(s) | 182, 1297, 1465, 1492, 1839, 2005 |
| Bme1390I | CCNGG | 5 cut(s) | 730, 810, 1060, 1453, 1476 |
| Bme18I | GGWCC | 2 cut(s) | 590, 1700 |
| BmgT120I | GGNCC | 3 cut(s) | 590, 727, 1700 |
| BmiI | GGNNCC | 6 cut(s) | 198, 507, 807, 817, 1351, 1701 |
| BmrFI | CCNGG | 5 cut(s) | 730, 810, 1060, 1453, 1476 |
| BmrI | ACTGGG | 2 cut(s) | 1099, 2019 |
| BmsI | GCATC | 5 cut(s) | 147, 965, 1179, 1321, 1480 |
| BmuI | ACTGGG | 2 cut(s) | 1099, 2019 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BpmI | CTGGAG | 1 cut(s) | 1431 |
| Bpu10I | CCTNAGC | 2 cut(s) | 300, 660 |
| BpuMI | CCSGG | 1 cut(s) | 730 |
| Bsa29I | ATCGAT | 1 cut(s) | 1720 |
| BsaAI | YACGTR | 2 cut(s) | 1965, 2183 |
| BsaJI | CCNNGG | 4 cut(s) | 264, 809, 1245, 1593 |
| BsaWI | WCCGGW | 3 cut(s) | 580, 964, 1681 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 670, 700, 1717, 1747 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 449, 587, 1065, 2013 |
| Bse118I | RCCGGY | 1 cut(s) | 964 |
| Bse1I | ACTGG | 5 cut(s) | 711, 832, 943, 1094, 2014 |
| Bse3DI | GCAATG | 2 cut(s) | 779, 1138 |
| BseBI | CCWGG | 4 cut(s) | 810, 1060, 1453, 1476 |
| BseCI | ATCGAT | 1 cut(s) | 1720 |
| BseDI | CCNNGG | 4 cut(s) | 264, 809, 1245, 1593 |
| BseGI | GGATG | 3 cut(s) | 1339, 1471, 1621 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 449, 587, 1065, 2013 |
| BseMI | GCAATG | 2 cut(s) | 779, 1138 |
| BseMII | CTCAG | 4 cut(s) | 35, 291, 543, 1650 |
| BseNI | ACTGG | 5 cut(s) | 711, 832, 943, 1094, 2014 |
| BseRI | GAGGAG | 1 cut(s) | 331 |
| BseSI | GKGCMC | 1 cut(s) | 296 |
| BseXI | GCAGC | 6 cut(s) | 192, 1307, 1475, 1502, 1849, 2015 |
| BseYI | CCCAGC | 1 cut(s) | 1755 |
| BshFI | GGCC | 5 cut(s) | 457, 728, 981, 1058, 1456 |
| BshNI | GGYRCC | 1 cut(s) | 196 |
| BshTI | ACCGGT | 1 cut(s) | 964 |
| BshVI | ATCGAT | 1 cut(s) | 1720 |
| BsiHKAI | GWGCWC | 2 cut(s) | 528, 2157 |
| BsiSI | CCGG | 4 cut(s) | 581, 730, 965, 1682 |
| BslFI | GGGAC | 4 cut(s) | 18, 33, 1197, 1772 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 449, 587, 1065, 2013 |
| BsmFI | GGGAC | 4 cut(s) | 18, 33, 1197, 1772 |
| BsmI | GAATGC | 5 cut(s) | 76, 486, 907, 1014, 1955 |
| BsnI | GGCC | 5 cut(s) | 457, 728, 981, 1058, 1456 |
| Bsp1286I | GDGCHC | 3 cut(s) | 296, 528, 2157 |
| Bsp19I | CCATGG | 2 cut(s) | 1245, 1593 |
| BspACI | CCGC | 4 cut(s) | 113, 1073, 1140, 2014 |
| BspANI | GGCC | 5 cut(s) | 457, 728, 981, 1058, 1456 |
| BspCNI | CTCAG | 4 cut(s) | 36, 292, 542, 1649 |
| BspDI | ATCGAT | 1 cut(s) | 1720 |
| BspHI | TCATGA | 1 cut(s) | 765 |
| BspLI | GGNNCC | 6 cut(s) | 198, 507, 807, 817, 1351, 1701 |
| BspMI | ACCTGC | 2 cut(s) | 896, 1579 |
| BspPI | GGATC | 9 cut(s) | 500, 513, 545, 572, 752, 1045, 1870, 2131, 2153 |
| BspQI | GCTCTTC | 2 cut(s) | 516, 1121 |
| BspT107I | GGYRCC | 1 cut(s) | 196 |
| BspTI | CTTAAG | 2 cut(s) | 236, 1583 |
| BsrDI | GCAATG | 2 cut(s) | 779, 1138 |
| BsrFI | RCCGGY | 1 cut(s) | 964 |
| BsrI | ACTGG | 5 cut(s) | 711, 832, 943, 1094, 2014 |
| BssAI | RCCGGY | 1 cut(s) | 964 |
| BssECI | CCNNGG | 4 cut(s) | 264, 809, 1245, 1593 |
| BssNAI | GTATAC | 1 cut(s) | 1098 |
| BssT1I | CCWWGG | 3 cut(s) | 264, 1245, 1593 |
| Bst1107I | GTATAC | 1 cut(s) | 1098 |
| Bst2UI | CCWGG | 4 cut(s) | 810, 1060, 1453, 1476 |
| Bst4CI | ACNGT | 8 cut(s) | 58, 417, 895, 1748, 1780, 1914, 1938, 2031 |
| Bst6I | CTCTTC | 3 cut(s) | 516, 1121, 1821 |
| BstAFI | CTTAAG | 2 cut(s) | 236, 1583 |
| BstBAI | YACGTR | 2 cut(s) | 1965, 2183 |
| BstC8I | GCNNGC | 1 cut(s) | 1138 |
| BstDEI | CTNAG | 9 cut(s) | 44, 300, 529, 569, 660, 1220, 1314, 1636, 2121 |
| BstDSI | CCRYGG | 2 cut(s) | 1245, 1593 |
| BstF5I | GGATG | 3 cut(s) | 1339, 1471, 1621 |
| BstH2I | RGCGCY | 1 cut(s) | 175 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 1137 |
| BstNI | CCWGG | 4 cut(s) | 810, 1060, 1453, 1476 |
| BstNSI | RCATGY | 1 cut(s) | 1765 |
| BstSCI | CCNGG | 5 cut(s) | 728, 808, 1058, 1451, 1474 |
| BstSLI | GKGCMC | 1 cut(s) | 296 |
| BstV1I | GCAGC | 6 cut(s) | 192, 1307, 1475, 1502, 1849, 2015 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstX2I | RGATCY | 3 cut(s) | 505, 550, 2136 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1144, 1897 |
| BstYI | RGATCY | 3 cut(s) | 505, 550, 2136 |
| BstZ17I | GTATAC | 1 cut(s) | 1098 |
| Bsu15I | ATCGAT | 1 cut(s) | 1720 |
| BsuRI | GGCC | 5 cut(s) | 457, 728, 981, 1058, 1456 |
| BsuTUI | ATCGAT | 1 cut(s) | 1720 |
| BtgI | CCRYGG | 2 cut(s) | 1245, 1593 |
| BtgZI | GCGATG | 1 cut(s) | 799 |
| BtsCI | GGATG | 3 cut(s) | 1339, 1471, 1621 |
| BtsI | GCAGTG | 3 cut(s) | 294, 1438, 2045 |
| BtsIMutI | CAGTG | 6 cut(s) | 54, 294, 718, 1438, 2007, 2045 |
| BveI | ACCTGC | 2 cut(s) | 896, 1579 |
| Cac8I | GCNNGC | 1 cut(s) | 1138 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2009 |
| CciI | TCATGA | 1 cut(s) | 765 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr10I | RCCGGY | 1 cut(s) | 964 |
| Cfr13I | GGNCC | 3 cut(s) | 590, 727, 1700 |
| ClaI | ATCGAT | 1 cut(s) | 1720 |
| Csp6I | GTAC | 7 cut(s) | 197, 413, 440, 896, 1320, 1568, 1986 |
| CspAI | ACCGGT | 1 cut(s) | 964 |
| CviQI | GTAC | 7 cut(s) | 197, 413, 440, 896, 1320, 1568, 1986 |
| DdeI | CTNAG | 9 cut(s) | 44, 300, 529, 569, 660, 1220, 1314, 1636, 2121 |
| DraI | TTTAAA | 1 cut(s) | 1380 |
| EaeI | YGGCCR | 3 cut(s) | 979, 1056, 1454 |
| Eam1104I | CTCTTC | 3 cut(s) | 516, 1121, 1821 |
| EarI | CTCTTC | 3 cut(s) | 516, 1121, 1821 |
| Eco130I | CCWWGG | 3 cut(s) | 264, 1245, 1593 |
| Eco147I | AGGCCT | 1 cut(s) | 457 |
| Eco32I | GATATC | 1 cut(s) | 1273 |
| Eco47I | GGWCC | 2 cut(s) | 590, 1700 |
| Eco47III | AGCGCT | 1 cut(s) | 173 |
| Eco57I | CTGAAG | 1 cut(s) | 555 |
| Eco72I | CACGTG | 1 cut(s) | 2183 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1700 |
| EcoRII | CCWGG | 4 cut(s) | 808, 1058, 1451, 1474 |
| EcoRV | GATATC | 1 cut(s) | 1273 |
| EcoT14I | CCWWGG | 3 cut(s) | 264, 1245, 1593 |
| ErhI | CCWWGG | 3 cut(s) | 264, 1245, 1593 |
| FaqI | GGGAC | 4 cut(s) | 18, 33, 1197, 1772 |
| FauI | CCCGC | 1 cut(s) | 2007 |
| FbaI | TGATCA | 1 cut(s) | 1810 |
| FblI | GTMKAC | 3 cut(s) | 109, 1097, 1943 |
| Fnu4HI | GCNGC | 6 cut(s) | 181, 1296, 1464, 1491, 1838, 2004 |
| FokI | GGATG | 3 cut(s) | 1326, 1458, 1628 |
| Fsp4HI | GCNGC | 6 cut(s) | 181, 1296, 1464, 1491, 1838, 2004 |
| FspBI | CTAG | 4 cut(s) | 8, 204, 948, 1715 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 6 cut(s) | 181, 1296, 1464, 1491, 1838, 2004 |
| GsaI | CCCAGC | 1 cut(s) | 1759 |
| GsuI | CTGGAG | 1 cut(s) | 1431 |
| HaeII | RGCGCY | 1 cut(s) | 175 |
| HaeIII | GGCC | 5 cut(s) | 457, 728, 981, 1058, 1456 |
| HapII | CCGG | 4 cut(s) | 581, 730, 965, 1682 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HincII | GTYRAC | 2 cut(s) | 226, 1944 |
| HindII | GTYRAC | 2 cut(s) | 226, 1944 |
| HindIII | AAGCTT | 1 cut(s) | 537 |
| HinfI | GANTC | 9 cut(s) | 46, 338, 365, 565, 914, 1169, 1436, 1442, 1831 |
| HpaI | GTTAAC | 1 cut(s) | 226 |
| HpaII | CCGG | 4 cut(s) | 581, 730, 965, 1682 |
| HphI | GGTGA | 7 cut(s) | 395, 954, 962, 1261, 1400, 1663, 2140 |
| Hpy166II | GTNNAC | 9 cut(s) | 110, 226, 634, 838, 970, 1098, 1309, 1320, 1944 |
| Hpy188I | TCNGA | 6 cut(s) | 45, 694, 1042, 1216, 1359, 1441 |
| Hpy8I | GTNNAC | 9 cut(s) | 110, 226, 634, 838, 970, 1098, 1309, 1320, 1944 |
| HpyCH4III | ACNGT | 8 cut(s) | 58, 417, 895, 1748, 1780, 1914, 1938, 2031 |
| HpyCH4IV | ACGT | 2 cut(s) | 1964, 2182 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 1137 |
| HpyF3I | CTNAG | 9 cut(s) | 44, 300, 529, 569, 660, 1220, 1314, 1636, 2121 |
| HpySE526I | ACGT | 2 cut(s) | 1964, 2182 |
| HspAI | GCGC | 1 cut(s) | 172 |
| KpnI | GGTACC | 1 cut(s) | 200 |
| Ksp22I | TGATCA | 1 cut(s) | 1810 |
| KspAI | GTTAAC | 1 cut(s) | 226 |
| LguI | GCTCTTC | 2 cut(s) | 516, 1121 |
| LmnI | GCTCC | 3 cut(s) | 266, 815, 1229 |
| Lsp1109I | GCAGC | 6 cut(s) | 192, 1307, 1475, 1502, 1849, 2015 |
| LweI | GCATC | 5 cut(s) | 147, 965, 1179, 1321, 1480 |
| MaeI | CTAG | 4 cut(s) | 8, 204, 948, 1715 |
| MaeII | ACGT | 2 cut(s) | 1964, 2182 |
| MaeIII | GTNAC | 5 cut(s) | 324, 335, 1249, 1742, 2092 |
| MflI | RGATCY | 3 cut(s) | 505, 550, 2136 |
| MhlI | GDGCHC | 3 cut(s) | 296, 528, 2157 |
| MlsI | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| MluNI | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| MlyI | GAGTC | 2 cut(s) | 55, 332 |
| MmeI | TCCRAC | 3 cut(s) | 89, 1427, 2164 |
| Mox20I | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| MroXI | GAANNNNTTC | 1 cut(s) | 672 |
| MscI | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| MslI | CAYNNNNRTG | 5 cut(s) | 81, 784, 975, 1499, 1895 |
| Msp20I | TGGCCA | 3 cut(s) | 981, 1058, 1456 |
| MspA1I | CMGCKG | 2 cut(s) | 533, 1140 |
| MspCI | CTTAAG | 2 cut(s) | 236, 1583 |
| MspI | CCGG | 4 cut(s) | 581, 730, 965, 1682 |
| MspR9I | CCNGG | 5 cut(s) | 730, 810, 1060, 1453, 1476 |
| Mva1269I | GAATGC | 5 cut(s) | 76, 486, 907, 1014, 1955 |
| MvaI | CCWGG | 4 cut(s) | 810, 1060, 1453, 1476 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 1137 |
| NciI | CCSGG | 1 cut(s) | 730 |
| NcoI | CCATGG | 2 cut(s) | 1245, 1593 |
| NlaIV | GGNNCC | 6 cut(s) | 198, 507, 807, 817, 1351, 1701 |
| NmuCI | GTSAC | 5 cut(s) | 324, 335, 1249, 1742, 2092 |
| NspI | RCATGY | 1 cut(s) | 1765 |
| PagI | TCATGA | 1 cut(s) | 765 |
| PceI | AGGCCT | 1 cut(s) | 457 |
| PciI | ACATGT | 1 cut(s) | 1761 |
| PciSI | GCTCTTC | 2 cut(s) | 516, 1121 |
| PctI | GAATGC | 5 cut(s) | 76, 486, 907, 1014, 1955 |
| PdmI | GAANNNNTTC | 1 cut(s) | 672 |
| PfeI | GAWTC | 7 cut(s) | 365, 565, 914, 1169, 1436, 1442, 1831 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 449, 1065 |
| PinAI | ACCGGT | 1 cut(s) | 964 |
| PkrI | GCNGC | 6 cut(s) | 182, 1297, 1465, 1492, 1839, 2005 |
| PleI | GAGTC | 2 cut(s) | 54, 332 |
| PmaCI | CACGTG | 1 cut(s) | 2183 |
| PmlI | CACGTG | 1 cut(s) | 2183 |
| PpsI | GAGTC | 2 cut(s) | 54, 332 |
| Ppu21I | YACGTR | 2 cut(s) | 1965, 2183 |
| PpuMI | RGGWCCY | 1 cut(s) | 1700 |
| PscI | ACATGT | 1 cut(s) | 1761 |
| Psp5II | RGGWCCY | 1 cut(s) | 1700 |
| Psp6I | CCWGG | 4 cut(s) | 808, 1058, 1451, 1474 |
| PspCI | CACGTG | 1 cut(s) | 2183 |
| PspFI | CCCAGC | 1 cut(s) | 1755 |
| PspGI | CCWGG | 4 cut(s) | 808, 1058, 1451, 1474 |
| PspN4I | GGNNCC | 6 cut(s) | 198, 507, 807, 817, 1351, 1701 |
| PspPI | GGNCC | 3 cut(s) | 590, 727, 1700 |
| PspPPI | RGGWCCY | 1 cut(s) | 1700 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 423, 455 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2009 |
| PsuI | RGATCY | 3 cut(s) | 505, 550, 2136 |
| PvuII | CAGCTG | 1 cut(s) | 533 |
| RsaI | GTAC | 7 cut(s) | 198, 414, 441, 897, 1321, 1569, 1987 |
| RsaNI | GTAC | 7 cut(s) | 197, 413, 440, 896, 1320, 1568, 1986 |
| RseI | CAYNNNNRTG | 5 cut(s) | 81, 784, 975, 1499, 1895 |
| SalI | GTCGAC | 1 cut(s) | 1942 |
| SapI | GCTCTTC | 2 cut(s) | 516, 1121 |
| SatI | GCNGC | 6 cut(s) | 181, 1296, 1464, 1491, 1838, 2004 |
| Sau96I | GGNCC | 3 cut(s) | 590, 727, 1700 |
| SchI | GAGTC | 2 cut(s) | 55, 332 |
| ScrFI | CCNGG | 5 cut(s) | 730, 810, 1060, 1453, 1476 |
| SduI | GDGCHC | 3 cut(s) | 296, 528, 2157 |
| SfaNI | GCATC | 5 cut(s) | 147, 965, 1179, 1321, 1480 |
| SinI | GGWCC | 2 cut(s) | 590, 1700 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 81, 784, 975, 1499, 1895 |
| SmlI | CTYRAG | 2 cut(s) | 236, 1583 |
| SmoI | CTYRAG | 2 cut(s) | 236, 1583 |
| SseBI | AGGCCT | 1 cut(s) | 457 |
| SsiI | CCGC | 4 cut(s) | 113, 1073, 1140, 2014 |
| SspMI | CTAG | 4 cut(s) | 8, 204, 948, 1715 |
| StuI | AGGCCT | 1 cut(s) | 457 |
| StyD4I | CCNGG | 5 cut(s) | 728, 808, 1058, 1451, 1474 |
| StyI | CCWWGG | 3 cut(s) | 264, 1245, 1593 |
| TaaI | ACNGT | 8 cut(s) | 58, 417, 895, 1748, 1780, 1914, 1938, 2031 |
| TaiI | ACGT | 2 cut(s) | 1967, 2185 |
| TaqI | TCGA | 8 cut(s) | 21, 214, 363, 1630, 1720, 1943, 1997, 2157 |
| TfiI | GAWTC | 7 cut(s) | 365, 565, 914, 1169, 1436, 1442, 1831 |
| TscAI | CASTG | 6 cut(s) | 61, 301, 718, 1438, 2014, 2045 |
| TseFI | GTSAC | 5 cut(s) | 324, 335, 1249, 1742, 2092 |
| TseI | GCWGC | 6 cut(s) | 180, 1295, 1463, 1490, 1837, 2003 |
| Tsp45I | GTSAC | 5 cut(s) | 324, 335, 1249, 1742, 2092 |
| TspGWI | ACGGA | 2 cut(s) | 400, 618 |
| TspRI | CASTG | 6 cut(s) | 61, 301, 718, 1438, 2014, 2045 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 449, 1065 |
| Vha464I | CTTAAG | 2 cut(s) | 236, 1583 |
| VpaK11BI | GGWCC | 2 cut(s) | 590, 1700 |
| XapI | RAATTY | 1 cut(s) | 495 |
| XbaI | TCTAGA | 1 cut(s) | 203 |
| XceI | RCATGY | 1 cut(s) | 1765 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1360 |
| XmiI | GTMKAC | 3 cut(s) | 109, 1097, 1943 |
| XmnI | GAANNNNTTC | 1 cut(s) | 672 |
| XspI | CTAG | 4 cut(s) | 8, 204, 948, 1715 |