Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 745 |
| AccB1I | GGYRCC | 1 cut(s) | 745 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 420 |
| AciI | CCGC | 1 cut(s) | 498 |
| AclWI | GGATC | 1 cut(s) | 316 |
| AcoI | YGGCCR | 1 cut(s) | 76 |
| AcsI | RAATTY | 5 cut(s) | 154, 382, 450, 959, 1086 |
| AfaI | GTAC | 7 cut(s) | 118, 433, 564, 568, 581, 747, 829 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 331, 420, 1034 |
| AgsI | TTSAA | 5 cut(s) | 153, 242, 1006, 1022, 1080 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 820 |
| AjnI | CCWGG | 1 cut(s) | 554 |
| AluBI | AGCT | 5 cut(s) | 71, 341, 690, 837, 943 |
| AluI | AGCT | 5 cut(s) | 71, 341, 690, 837, 943 |
| Alw26I | GTCTC | 4 cut(s) | 50, 760, 925, 945 |
| AlwI | GGATC | 1 cut(s) | 316 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 420 |
| AoxI | GGCC | 3 cut(s) | 76, 333, 571 |
| ApoI | RAATTY | 5 cut(s) | 154, 382, 450, 959, 1086 |
| Asp718I | GGTACC | 1 cut(s) | 745 |
| AspS9I | GGNCC | 1 cut(s) | 334 |
| AsuC2I | CCSGG | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 1 cut(s) | 1049 |
| AsuII | TTCGAA | 1 cut(s) | 511 |
| BalI | TGGCCA | 1 cut(s) | 78 |
| BanI | GGYRCC | 1 cut(s) | 745 |
| BbsI | GAAGAC | 2 cut(s) | 467, 721 |
| BccI | CCATC | 3 cut(s) | 154, 704, 910 |
| BceAI | ACGGC | 2 cut(s) | 246, 558 |
| BciT130I | CCWGG | 1 cut(s) | 556 |
| BcnI | CCSGG | 1 cut(s) | 326 |
| BcoDI | GTCTC | 4 cut(s) | 50, 760, 925, 945 |
| BfaI | CTAG | 5 cut(s) | 197, 771, 825, 872, 1011 |
| BfmI | CTRYAG | 1 cut(s) | 41 |
| Bme1390I | CCNGG | 2 cut(s) | 326, 556 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 820 |
| BmgT120I | GGNCC | 1 cut(s) | 334 |
| BmiI | GGNNCC | 1 cut(s) | 747 |
| BmrFI | CCNGG | 2 cut(s) | 326, 556 |
| BmsI | GCATC | 5 cut(s) | 26, 188, 282, 666, 727 |
| BpiI | GAAGAC | 2 cut(s) | 467, 721 |
| Bpu14I | TTCGAA | 1 cut(s) | 511 |
| BpuMI | CCSGG | 1 cut(s) | 326 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaI | GGTCTC | 2 cut(s) | 760, 925 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 757, 787, 1091 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 331, 420, 1034 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| Bse3DI | GCAATG | 2 cut(s) | 363, 543 |
| BseBI | CCWGG | 1 cut(s) | 556 |
| BseGI | GGATG | 4 cut(s) | 52, 715, 847, 921 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 331, 420, 1034 |
| BseMI | GCAATG | 2 cut(s) | 363, 543 |
| BseMII | CTCAG | 3 cut(s) | 287, 747, 896 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BseRI | GAGGAG | 2 cut(s) | 158, 667 |
| BseYI | CCCAGC | 2 cut(s) | 305, 837 |
| BshFI | GGCC | 3 cut(s) | 78, 335, 573 |
| BshNI | GGYRCC | 1 cut(s) | 745 |
| BsiSI | CCGG | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 331, 420, 1034 |
| BsmAI | GTCTC | 4 cut(s) | 50, 760, 925, 945 |
| BsmBI | CGTCTC | 1 cut(s) | 945 |
| BsmI | GAATGC | 2 cut(s) | 475, 897 |
| BsnI | GGCC | 3 cut(s) | 78, 335, 573 |
| Bso31I | GGTCTC | 2 cut(s) | 760, 925 |
| Bsp119I | TTCGAA | 1 cut(s) | 511 |
| Bsp1407I | TGTACA | 1 cut(s) | 579 |
| Bsp143I | GATC | 1 cut(s) | 321 |
| BspACI | CCGC | 1 cut(s) | 498 |
| BspANI | GGCC | 3 cut(s) | 78, 335, 573 |
| BspCNI | CTCAG | 3 cut(s) | 288, 746, 897 |
| BspHI | TCATGA | 1 cut(s) | 1109 |
| BspLI | GGNNCC | 1 cut(s) | 747 |
| BspPI | GGATC | 1 cut(s) | 316 |
| BspT104I | TTCGAA | 1 cut(s) | 511 |
| BspT107I | GGYRCC | 1 cut(s) | 745 |
| BspTNI | GGTCTC | 2 cut(s) | 760, 925 |
| BsrDI | GCAATG | 2 cut(s) | 363, 543 |
| BsrGI | TGTACA | 1 cut(s) | 579 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssMI | GATC | 1 cut(s) | 321 |
| Bst2UI | CCWGG | 1 cut(s) | 556 |
| Bst4CI | ACNGT | 3 cut(s) | 192, 808, 956 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstAUI | TGTACA | 1 cut(s) | 579 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstBI | TTCGAA | 1 cut(s) | 511 |
| BstC8I | GCNNGC | 3 cut(s) | 31, 552, 945 |
| BstDEI | CTNAG | 4 cut(s) | 264, 296, 733, 905 |
| BstEII | GGTNACC | 1 cut(s) | 201 |
| BstF5I | GGATG | 4 cut(s) | 52, 715, 847, 921 |
| BstKTI | GATC | 1 cut(s) | 324 |
| BstMAI | GTCTC | 4 cut(s) | 50, 760, 925, 945 |
| BstMBI | GATC | 1 cut(s) | 321 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 176, 542, 551 |
| BstNI | CCWGG | 1 cut(s) | 556 |
| BstNSI | RCATGY | 1 cut(s) | 33 |
| BstPI | GGTNACC | 1 cut(s) | 201 |
| BstSCI | CCNGG | 2 cut(s) | 324, 554 |
| BstSFI | CTRYAG | 1 cut(s) | 41 |
| BstSNI | TACGTA | 1 cut(s) | 566 |
| BstV2I | GAAGAC | 2 cut(s) | 467, 721 |
| BsuRI | GGCC | 3 cut(s) | 78, 335, 573 |
| BtsCI | GGATG | 4 cut(s) | 52, 715, 847, 921 |
| BtsI | GCAGTG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 2 cut(s) | 177, 902 |
| Cac8I | GCNNGC | 3 cut(s) | 31, 552, 945 |
| CaiI | CAGNNNCTG | 1 cut(s) | 420 |
| CciI | TCATGA | 1 cut(s) | 1109 |
| Cfr13I | GGNCC | 1 cut(s) | 334 |
| Csp6I | GTAC | 7 cut(s) | 117, 432, 563, 567, 580, 746, 828 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 195, 230 |
| CviAII | CATG | 4 cut(s) | 14, 30, 185, 1110 |
| CviQI | GTAC | 7 cut(s) | 117, 432, 563, 567, 580, 746, 828 |
| DdeI | CTNAG | 4 cut(s) | 264, 296, 733, 905 |
| DpnI | GATC | 1 cut(s) | 323 |
| DpnII | GATC | 1 cut(s) | 321 |
| DriI | GACNNNNNGTC | 1 cut(s) | 820 |
| EaeI | YGGCCR | 1 cut(s) | 76 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 820 |
| Eco105I | TACGTA | 1 cut(s) | 566 |
| Eco31I | GGTCTC | 2 cut(s) | 760, 925 |
| Eco32I | GATATC | 1 cut(s) | 316 |
| Eco91I | GGTNACC | 1 cut(s) | 201 |
| EcoO65I | GGTNACC | 1 cut(s) | 201 |
| EcoRII | CCWGG | 1 cut(s) | 554 |
| EcoRV | GATATC | 1 cut(s) | 316 |
| EcoT22I | ATGCAT | 1 cut(s) | 19 |
| Esp3I | CGTCTC | 1 cut(s) | 945 |
| FaeI | CATG | 4 cut(s) | 17, 33, 188, 1113 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 242, 274 |
| FatI | CATG | 4 cut(s) | 13, 29, 184, 1109 |
| FauI | CCCGC | 1 cut(s) | 491 |
| FauNDI | CATATG | 1 cut(s) | 352 |
| FokI | GGATG | 4 cut(s) | 59, 722, 854, 928 |
| FspBI | CTAG | 5 cut(s) | 197, 771, 825, 872, 1011 |
| GsaI | CCCAGC | 2 cut(s) | 309, 841 |
| HaeIII | GGCC | 3 cut(s) | 78, 335, 573 |
| HapII | CCGG | 1 cut(s) | 325 |
| Hin1II | CATG | 4 cut(s) | 17, 33, 188, 1113 |
| HincII | GTYRAC | 1 cut(s) | 375 |
| HindII | GTYRAC | 1 cut(s) | 375 |
| HinfI | GANTC | 3 cut(s) | 417, 605, 1006 |
| HpaII | CCGG | 1 cut(s) | 325 |
| HphI | GGTGA | 1 cut(s) | 1049 |
| Hpy166II | GTNNAC | 3 cut(s) | 375, 434, 563 |
| Hpy188I | TCNGA | 4 cut(s) | 486, 736, 925, 1074 |
| Hpy188III | TCNNGA | 3 cut(s) | 319, 599, 1110 |
| Hpy8I | GTNNAC | 3 cut(s) | 375, 434, 563 |
| HpyAV | CCTTC | 2 cut(s) | 481, 648 |
| HpyCH4III | ACNGT | 3 cut(s) | 192, 808, 956 |
| HpyCH4IV | ACGT | 4 cut(s) | 209, 565, 859, 1062 |
| HpyCH4V | TGCA | 7 cut(s) | 17, 139, 179, 356, 536, 620, 802 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 176, 542, 551 |
| HpyF3I | CTNAG | 4 cut(s) | 264, 296, 733, 905 |
| HpySE526I | ACGT | 4 cut(s) | 209, 565, 859, 1062 |
| Hsp92II | CATG | 4 cut(s) | 17, 33, 188, 1113 |
| KpnI | GGTACC | 1 cut(s) | 749 |
| Kzo9I | GATC | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 654 |
| LweI | GCATC | 5 cut(s) | 26, 188, 282, 666, 727 |
| MaeI | CTAG | 5 cut(s) | 197, 771, 825, 872, 1011 |
| MaeII | ACGT | 4 cut(s) | 209, 565, 859, 1062 |
| MaeIII | GTNAC | 3 cut(s) | 201, 812, 844 |
| MalI | GATC | 1 cut(s) | 323 |
| MboI | GATC | 1 cut(s) | 321 |
| MboII | GAAGA | 5 cut(s) | 301, 391, 472, 652, 721 |
| MlsI | TGGCCA | 1 cut(s) | 78 |
| MluNI | TGGCCA | 1 cut(s) | 78 |
| Mox20I | TGGCCA | 1 cut(s) | 78 |
| Mph1103I | ATGCAT | 1 cut(s) | 19 |
| MscI | TGGCCA | 1 cut(s) | 78 |
| MseI | TTAA | 3 cut(s) | 249, 528, 969 |
| Msp20I | TGGCCA | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 325 |
| MspR9I | CCNGG | 2 cut(s) | 326, 556 |
| Mva1269I | GAATGC | 2 cut(s) | 475, 897 |
| MvaI | CCWGG | 1 cut(s) | 556 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 176, 542, 551 |
| NciI | CCSGG | 1 cut(s) | 326 |
| NdeI | CATATG | 1 cut(s) | 352 |
| NdeII | GATC | 1 cut(s) | 321 |
| NlaIII | CATG | 4 cut(s) | 17, 33, 188, 1113 |
| NlaIV | GGNNCC | 1 cut(s) | 747 |
| NmuCI | GTSAC | 2 cut(s) | 812, 844 |
| NsiI | ATGCAT | 1 cut(s) | 19 |
| NspI | RCATGY | 1 cut(s) | 33 |
| NspV | TTCGAA | 1 cut(s) | 511 |
| PaeI | GCATGC | 1 cut(s) | 33 |
| PagI | TCATGA | 1 cut(s) | 1109 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 571 |
| PctI | GAATGC | 2 cut(s) | 475, 897 |
| PfeI | GAWTC | 3 cut(s) | 417, 605, 1006 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 420 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| Psp6I | CCWGG | 1 cut(s) | 554 |
| PspEI | GGTNACC | 1 cut(s) | 201 |
| PspFI | CCCAGC | 2 cut(s) | 305, 837 |
| PspGI | CCWGG | 1 cut(s) | 554 |
| PspN4I | GGNNCC | 1 cut(s) | 747 |
| PspPI | GGNCC | 1 cut(s) | 334 |
| PstNI | CAGNNNCTG | 1 cut(s) | 420 |
| RsaI | GTAC | 7 cut(s) | 118, 433, 564, 568, 581, 747, 829 |
| RsaNI | GTAC | 7 cut(s) | 117, 432, 563, 567, 580, 746, 828 |
| SaqAI | TTAA | 3 cut(s) | 249, 528, 969 |
| Sau3AI | GATC | 1 cut(s) | 321 |
| Sau96I | GGNCC | 1 cut(s) | 334 |
| ScrFI | CCNGG | 2 cut(s) | 326, 556 |
| SfaNI | GCATC | 5 cut(s) | 26, 188, 282, 666, 727 |
| SfcI | CTRYAG | 1 cut(s) | 41 |
| SfuI | TTCGAA | 1 cut(s) | 511 |
| SnaBI | TACGTA | 1 cut(s) | 566 |
| SphI | GCATGC | 1 cut(s) | 33 |
| SsiI | CCGC | 1 cut(s) | 498 |
| SspI | AATATT | 2 cut(s) | 593, 1069 |
| SspMI | CTAG | 5 cut(s) | 197, 771, 825, 872, 1011 |
| StyD4I | CCNGG | 2 cut(s) | 324, 554 |
| TaaI | ACNGT | 3 cut(s) | 192, 808, 956 |
| TaiI | ACGT | 4 cut(s) | 212, 568, 862, 1065 |
| TaqI | TCGA | 1 cut(s) | 511 |
| TatI | WGTACW | 2 cut(s) | 431, 579 |
| TfiI | GAWTC | 3 cut(s) | 417, 605, 1006 |
| Tru1I | TTAA | 3 cut(s) | 249, 528, 969 |
| Tru9I | TTAA | 3 cut(s) | 249, 528, 969 |
| TscAI | CASTG | 2 cut(s) | 177, 909 |
| TseFI | GTSAC | 2 cut(s) | 812, 844 |
| Tsp45I | GTSAC | 2 cut(s) | 812, 844 |
| TspDTI | ATGAA | 6 cut(s) | 51, 201, 443, 597, 630, 1079 |
| TspRI | CASTG | 2 cut(s) | 177, 909 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 420 |
| XapI | RAATTY | 5 cut(s) | 154, 382, 450, 959, 1086 |
| XceI | RCATGY | 1 cut(s) | 33 |
| XspI | CTAG | 5 cut(s) | 197, 771, 825, 872, 1011 |
| Zsp2I | ATGCAT | 1 cut(s) | 19 |