ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 549 |
| AclWI | GGATC | 1 cut(s) | 404 |
| AcsI | RAATTY | 3 cut(s) | 154, 708, 756 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 261, 548 |
| AflIII | ACRYGT | 2 cut(s) | 144, 430 |
| AgsI | TTSAA | 3 cut(s) | 353, 641, 746 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AluBI | AGCT | 2 cut(s) | 242, 356 |
| AluI | AGCT | 2 cut(s) | 242, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 211 |
| Alw26I | GTCTC | 1 cut(s) | 842 |
| AlwI | GGATC | 1 cut(s) | 404 |
| AoxI | GGCC | 3 cut(s) | 115, 345, 518 |
| ApeKI | GCWGC | 4 cut(s) | 53, 170, 242, 665 |
| ApoI | RAATTY | 3 cut(s) | 154, 708, 756 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 249, 281 |
| AseI | ATTAAT | 1 cut(s) | 570 |
| AspS9I | GGNCC | 1 cut(s) | 345 |
| BbsI | GAAGAC | 1 cut(s) | 259 |
| Bbv12I | GWGCWC | 1 cut(s) | 211 |
| BbvCI | CCTCAGC | 1 cut(s) | 14 |
| BbvI | GCAGC | 4 cut(s) | 40, 157, 229, 652 |
| BccI | CCATC | 4 cut(s) | 321, 407, 463, 587 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BcoDI | GTCTC | 1 cut(s) | 842 |
| BfaI | CTAG | 3 cut(s) | 501, 546, 813 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BisI | GCNGC | 5 cut(s) | 54, 171, 243, 550, 666 |
| BlsI | GCNGC | 5 cut(s) | 55, 172, 244, 551, 667 |
| Bme1390I | CCNGG | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 1 cut(s) | 485 |
| BmsI | GCATC | 2 cut(s) | 194, 487 |
| BpiI | GAAGAC | 1 cut(s) | 259 |
| Bpu10I | CCTNAGC | 1 cut(s) | 14 |
| BsaAI | YACGTR | 3 cut(s) | 145, 287, 323 |
| BsaJI | CCNNGG | 1 cut(s) | 214 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 261, 548 |
| Bse1I | ACTGG | 1 cut(s) | 118 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 1 cut(s) | 214 |
| BseGI | GGATG | 2 cut(s) | 343, 474 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 261, 548 |
| BseMII | CTCAG | 2 cut(s) | 5, 56 |
| BseNI | ACTGG | 1 cut(s) | 118 |
| BseRI | GAGGAG | 2 cut(s) | 695, 698 |
| BseXI | GCAGC | 4 cut(s) | 40, 157, 229, 652 |
| BsgI | GTGCAG | 1 cut(s) | 651 |
| BshFI | GGCC | 3 cut(s) | 117, 347, 520 |
| BsiHKAI | GWGCWC | 1 cut(s) | 211 |
| BslFI | GGGAC | 2 cut(s) | 233, 472 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 261, 548 |
| BsmAI | GTCTC | 1 cut(s) | 842 |
| BsmFI | GGGAC | 2 cut(s) | 233, 472 |
| BsnI | GGCC | 3 cut(s) | 117, 347, 520 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 4 cut(s) | 85, 176, 396, 625 |
| BspACI | CCGC | 1 cut(s) | 549 |
| BspANI | GGCC | 3 cut(s) | 117, 347, 520 |
| BspCNI | CTCAG | 2 cut(s) | 6, 57 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspPI | GGATC | 1 cut(s) | 404 |
| BsrI | ACTGG | 1 cut(s) | 118 |
| BssECI | CCNNGG | 1 cut(s) | 214 |
| BssMI | GATC | 4 cut(s) | 85, 176, 396, 625 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 1 cut(s) | 463 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstBAI | YACGTR | 3 cut(s) | 145, 287, 323 |
| BstC8I | GCNNGC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 4 cut(s) | 14, 65, 528, 852 |
| BstF5I | GGATG | 2 cut(s) | 343, 474 |
| BstKTI | GATC | 4 cut(s) | 88, 179, 399, 628 |
| BstMAI | GTCTC | 1 cut(s) | 842 |
| BstMBI | GATC | 4 cut(s) | 85, 176, 396, 625 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 19, 353 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstNSI | RCATGY | 2 cut(s) | 434, 767 |
| BstSCI | CCNGG | 1 cut(s) | 483 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstV1I | GCAGC | 4 cut(s) | 40, 157, 229, 652 |
| BstV2I | GAAGAC | 1 cut(s) | 259 |
| BstX2I | RGATCY | 1 cut(s) | 396 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 413 |
| BstYI | RGATCY | 1 cut(s) | 396 |
| BsuRI | GGCC | 3 cut(s) | 117, 347, 520 |
| BtsCI | GGATG | 2 cut(s) | 343, 474 |
| Cac8I | GCNNGC | 1 cut(s) | 240 |
| CciI | TCATGA | 1 cut(s) | 628 |
| Cfr13I | GGNCC | 1 cut(s) | 345 |
| CsiI | ACCWGGT | 1 cut(s) | 483 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 643, 678 |
| CviAII | CATG | 4 cut(s) | 271, 431, 629, 764 |
| DdeI | CTNAG | 4 cut(s) | 14, 65, 528, 852 |
| DpnI | GATC | 4 cut(s) | 87, 178, 398, 627 |
| DpnII | GATC | 4 cut(s) | 85, 176, 396, 625 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| Eco147I | AGGCCT | 1 cut(s) | 520 |
| EcoRI | GAATTC | 2 cut(s) | 154, 756 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| FaeI | CATG | 4 cut(s) | 274, 434, 632, 767 |
| FaqI | GGGAC | 2 cut(s) | 233, 472 |
| FatI | CATG | 4 cut(s) | 270, 430, 628, 763 |
| Fnu4HI | GCNGC | 5 cut(s) | 54, 171, 243, 550, 666 |
| FokI | GGATG | 2 cut(s) | 350, 481 |
| Fsp4HI | GCNGC | 5 cut(s) | 54, 171, 243, 550, 666 |
| FspBI | CTAG | 3 cut(s) | 501, 546, 813 |
| GluI | GCNGC | 5 cut(s) | 54, 171, 243, 550, 666 |
| HaeIII | GGCC | 3 cut(s) | 117, 347, 520 |
| Hin1II | CATG | 4 cut(s) | 274, 434, 632, 767 |
| HinfI | GANTC | 2 cut(s) | 647, 688 |
| Hpy166II | GTNNAC | 1 cut(s) | 589 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 131, 153, 215, 623, 660, 697 |
| Hpy188III | TCNNGA | 1 cut(s) | 629 |
| Hpy8I | GTNNAC | 1 cut(s) | 589 |
| HpyAV | CCTTC | 1 cut(s) | 80 |
| HpyCH4III | ACNGT | 1 cut(s) | 463 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 286, 322 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 668, 791 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 19, 353 |
| HpyF3I | CTNAG | 4 cut(s) | 14, 65, 528, 852 |
| HpySE526I | ACGT | 3 cut(s) | 144, 286, 322 |
| Hsp92II | CATG | 4 cut(s) | 274, 434, 632, 767 |
| Kzo9I | GATC | 4 cut(s) | 85, 176, 396, 625 |
| LmnI | GCTCC | 1 cut(s) | 368 |
| LpnPI | CCDG | 4 cut(s) | 131, 361, 470, 497 |
| Lsp1109I | GCAGC | 4 cut(s) | 40, 157, 229, 652 |
| LweI | GCATC | 2 cut(s) | 194, 487 |
| MabI | ACCWGGT | 1 cut(s) | 483 |
| MaeI | CTAG | 3 cut(s) | 501, 546, 813 |
| MaeII | ACGT | 3 cut(s) | 144, 286, 322 |
| MaeIII | GTNAC | 1 cut(s) | 820 |
| MalI | GATC | 4 cut(s) | 87, 178, 398, 627 |
| MboI | GATC | 4 cut(s) | 85, 176, 396, 625 |
| MboII | GAAGA | 4 cut(s) | 47, 259, 287, 729 |
| MflI | RGATCY | 1 cut(s) | 396 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MluCI | AATT | 5 cut(s) | 154, 408, 436, 708, 756 |
| MseI | TTAA | 4 cut(s) | 314, 524, 570, 672 |
| MslI | CAYNNNNRTG | 1 cut(s) | 325 |
| MspR9I | CCNGG | 1 cut(s) | 485 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 19, 353 |
| NdeII | GATC | 4 cut(s) | 85, 176, 396, 625 |
| NlaIII | CATG | 4 cut(s) | 274, 434, 632, 767 |
| NspI | RCATGY | 2 cut(s) | 434, 767 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PceI | AGGCCT | 1 cut(s) | 520 |
| PciI | ACATGT | 1 cut(s) | 430 |
| PfeI | GAWTC | 2 cut(s) | 647, 688 |
| PkrI | GCNGC | 5 cut(s) | 55, 172, 244, 551, 667 |
| Ppu21I | YACGTR | 3 cut(s) | 145, 287, 323 |
| PscI | ACATGT | 1 cut(s) | 430 |
| PshBI | ATTAAT | 1 cut(s) | 570 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspPI | GGNCC | 1 cut(s) | 345 |
| PsuI | RGATCY | 1 cut(s) | 396 |
| RseI | CAYNNNNRTG | 1 cut(s) | 325 |
| SaqAI | TTAA | 4 cut(s) | 314, 524, 570, 672 |
| SatI | GCNGC | 5 cut(s) | 54, 171, 243, 550, 666 |
| Sau3AI | GATC | 4 cut(s) | 85, 176, 396, 625 |
| Sau96I | GGNCC | 1 cut(s) | 345 |
| ScrFI | CCNGG | 1 cut(s) | 485 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SexAI | ACCWGGT | 1 cut(s) | 483 |
| SfaNI | GCATC | 2 cut(s) | 194, 487 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 325 |
| Sse9I | AATT | 5 cut(s) | 154, 408, 436, 708, 756 |
| SseBI | AGGCCT | 1 cut(s) | 520 |
| SsiI | CCGC | 1 cut(s) | 549 |
| SspMI | CTAG | 3 cut(s) | 501, 546, 813 |
| StuI | AGGCCT | 1 cut(s) | 520 |
| StyD4I | CCNGG | 1 cut(s) | 483 |
| TaaI | ACNGT | 1 cut(s) | 463 |
| TaiI | ACGT | 3 cut(s) | 147, 289, 325 |
| TaqI | TCGA | 1 cut(s) | 650 |
| TasI | AATT | 5 cut(s) | 154, 408, 436, 708, 756 |
| TauI | GCSGC | 1 cut(s) | 552 |
| TfiI | GAWTC | 2 cut(s) | 647, 688 |
| Tru1I | TTAA | 4 cut(s) | 314, 524, 570, 672 |
| Tru9I | TTAA | 4 cut(s) | 314, 524, 570, 672 |
| TseI | GCWGC | 4 cut(s) | 53, 170, 242, 665 |
| TspDTI | ATGAA | 2 cut(s) | 216, 259 |
| TspGWI | ACGGA | 2 cut(s) | 44, 572 |
| VspI | ATTAAT | 1 cut(s) | 570 |
| XapI | RAATTY | 3 cut(s) | 154, 708, 756 |
| XceI | RCATGY | 2 cut(s) | 434, 767 |
| XspI | CTAG | 3 cut(s) | 501, 546, 813 |