Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 20 - 118 | 3.3e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 239 |
| AclWI | GGATC | 1 cut(s) | 260 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 92 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AluBI | AGCT | 3 cut(s) | 107, 148, 356 |
| AluI | AGCT | 3 cut(s) | 107, 148, 356 |
| Alw26I | GTCTC | 2 cut(s) | 13, 424 |
| AlwI | GGATC | 1 cut(s) | 260 |
| AoxI | GGCC | 2 cut(s) | 5, 367 |
| ApeKI | GCWGC | 3 cut(s) | 169, 332, 347 |
| AspS9I | GGNCC | 1 cut(s) | 5 |
| AsuC2I | CCSGG | 1 cut(s) | 220 |
| BbvI | GCAGC | 3 cut(s) | 181, 319, 359 |
| BccI | CCATC | 1 cut(s) | 217 |
| BcnI | CCSGG | 1 cut(s) | 220 |
| BcoDI | GTCTC | 2 cut(s) | 13, 424 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BisI | GCNGC | 3 cut(s) | 170, 333, 348 |
| BlsI | GCNGC | 3 cut(s) | 171, 334, 349 |
| Bme1390I | CCNGG | 1 cut(s) | 220 |
| BmgT120I | GGNCC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 220 |
| BmsI | GCATC | 2 cut(s) | 181, 276 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 220 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 17, 47 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 92 |
| Bse1I | ACTGG | 1 cut(s) | 27 |
| BseGI | GGATG | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BseNI | ACTGG | 1 cut(s) | 27 |
| BseXI | GCAGC | 3 cut(s) | 181, 319, 359 |
| BshFI | GGCC | 2 cut(s) | 7, 369 |
| BsiSI | CCGG | 1 cut(s) | 219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BsmAI | GTCTC | 2 cut(s) | 13, 424 |
| BsnI | GGCC | 2 cut(s) | 7, 369 |
| Bsp143I | GATC | 1 cut(s) | 252 |
| BspANI | GGCC | 2 cut(s) | 7, 369 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 260 |
| BsrI | ACTGG | 1 cut(s) | 27 |
| BssMI | GATC | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 1 cut(s) | 213 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstF5I | GGATG | 1 cut(s) | 228 |
| BstKTI | GATC | 1 cut(s) | 255 |
| BstMAI | GTCTC | 2 cut(s) | 13, 424 |
| BstMBI | GATC | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 45, 329, 353 |
| BstSCI | CCNGG | 1 cut(s) | 218 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 3 cut(s) | 181, 319, 359 |
| BstX2I | RGATCY | 1 cut(s) | 252 |
| BstYI | RGATCY | 1 cut(s) | 252 |
| BsuRI | GGCC | 2 cut(s) | 7, 369 |
| BtsCI | GGATG | 1 cut(s) | 228 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 1 cut(s) | 5 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CviAII | CATG | 1 cut(s) | 113 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DpnI | GATC | 1 cut(s) | 254 |
| DpnII | GATC | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 1 cut(s) | 369 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| FaeI | CATG | 1 cut(s) | 116 |
| FaiI | YATR | 6 cut(s) | 114, 179, 258, 365, 382, 416 |
| FatI | CATG | 1 cut(s) | 112 |
| FblI | GTMKAC | 1 cut(s) | 239 |
| Fnu4HI | GCNGC | 3 cut(s) | 170, 333, 348 |
| FokI | GGATG | 1 cut(s) | 235 |
| Fsp4HI | GCNGC | 3 cut(s) | 170, 333, 348 |
| GluI | GCNGC | 3 cut(s) | 170, 333, 348 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HaeIII | GGCC | 2 cut(s) | 7, 369 |
| HapII | CCGG | 1 cut(s) | 219 |
| Hin1II | CATG | 1 cut(s) | 116 |
| HincII | GTYRAC | 1 cut(s) | 216 |
| HindII | GTYRAC | 1 cut(s) | 216 |
| HindIII | AAGCTT | 1 cut(s) | 354 |
| HinfI | GANTC | 1 cut(s) | 425 |
| HpaII | CCGG | 1 cut(s) | 219 |
| Hpy166II | GTNNAC | 3 cut(s) | 216, 240, 307 |
| Hpy188I | TCNGA | 2 cut(s) | 388, 424 |
| Hpy188III | TCNNGA | 1 cut(s) | 67 |
| Hpy8I | GTNNAC | 3 cut(s) | 216, 240, 307 |
| HpyAV | CCTTC | 1 cut(s) | 405 |
| HpyCH4III | ACNGT | 1 cut(s) | 213 |
| HpyCH4V | TGCA | 1 cut(s) | 169 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 45, 329, 353 |
| Hsp92II | CATG | 1 cut(s) | 116 |
| Kzo9I | GATC | 1 cut(s) | 252 |
| LmnI | GCTCC | 1 cut(s) | 25 |
| LpnPI | CCDG | 7 cut(s) | 8, 14, 25, 110, 186, 232, 235 |
| Lsp1109I | GCAGC | 3 cut(s) | 181, 319, 359 |
| LweI | GCATC | 2 cut(s) | 181, 276 |
| MalI | GATC | 1 cut(s) | 254 |
| MboI | GATC | 1 cut(s) | 252 |
| MboII | GAAGA | 1 cut(s) | 351 |
| MflI | RGATCY | 1 cut(s) | 252 |
| MluCI | AATT | 1 cut(s) | 119 |
| MnlI | CCTC | 5 cut(s) | 96, 109, 130, 309, 313 |
| MseI | TTAA | 1 cut(s) | 204 |
| MslI | CAYNNNNRTG | 1 cut(s) | 284 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspI | CCGG | 1 cut(s) | 219 |
| MspR9I | CCNGG | 1 cut(s) | 220 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 45, 329, 353 |
| NciI | CCSGG | 1 cut(s) | 220 |
| NdeII | GATC | 1 cut(s) | 252 |
| NlaIII | CATG | 1 cut(s) | 116 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PceI | AGGCCT | 1 cut(s) | 369 |
| PfeI | GAWTC | 1 cut(s) | 425 |
| PkrI | GCNGC | 3 cut(s) | 171, 334, 349 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 5 |
| PsuI | RGATCY | 1 cut(s) | 252 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| RseI | CAYNNNNRTG | 1 cut(s) | 284 |
| SaqAI | TTAA | 1 cut(s) | 204 |
| SatI | GCNGC | 3 cut(s) | 170, 333, 348 |
| Sau3AI | GATC | 1 cut(s) | 252 |
| Sau96I | GGNCC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 1 cut(s) | 220 |
| SetI | ASST | 3 cut(s) | 109, 150, 358 |
| SfaNI | GCATC | 2 cut(s) | 181, 276 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 284 |
| Sse9I | AATT | 1 cut(s) | 119 |
| SseBI | AGGCCT | 1 cut(s) | 369 |
| StuI | AGGCCT | 1 cut(s) | 369 |
| StyD4I | CCNGG | 1 cut(s) | 218 |
| TaaI | ACNGT | 1 cut(s) | 213 |
| TasI | AATT | 1 cut(s) | 119 |
| TfiI | GAWTC | 1 cut(s) | 425 |
| Tru1I | TTAA | 1 cut(s) | 204 |
| Tru9I | TTAA | 1 cut(s) | 204 |
| TseI | GCWGC | 3 cut(s) | 169, 332, 347 |
| TspGWI | ACGGA | 1 cut(s) | 296 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 298 |
| XmiI | GTMKAC | 1 cut(s) | 239 |