Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 261 - 356 | 2.2e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 507, 920 |
| Acc65I | GGTACC | 1 cut(s) | 607 |
| AccB1I | GGYRCC | 1 cut(s) | 607 |
| AccBSI | CCGCTC | 1 cut(s) | 16 |
| AccI | GTMKAC | 1 cut(s) | 769 |
| AccII | CGCG | 2 cut(s) | 123, 156 |
| AciI | CCGC | 7 cut(s) | 14, 145, 154, 156, 277, 281, 914 |
| AclWI | GGATC | 3 cut(s) | 61, 103, 1116 |
| AcsI | RAATTY | 2 cut(s) | 423, 991 |
| AcuI | CTGAAG | 2 cut(s) | 323, 531 |
| AcvI | CACGTG | 1 cut(s) | 764 |
| AfaI | GTAC | 5 cut(s) | 506, 609, 644, 695, 999 |
| AfeI | AGCGCT | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 280, 356, 764, 1197 |
| AflII | CTTAAG | 1 cut(s) | 148 |
| AgsI | TTSAA | 4 cut(s) | 668, 971, 1091, 1179 |
| AluBI | AGCT | 8 cut(s) | 176, 226, 545, 737, 795, 920, 1122, 1133 |
| AluI | AGCT | 8 cut(s) | 176, 226, 545, 737, 795, 920, 1122, 1133 |
| Alw21I | GWGCWC | 1 cut(s) | 604 |
| Alw26I | GTCTC | 1 cut(s) | 1067 |
| AlwI | GGATC | 3 cut(s) | 61, 103, 1116 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 554 |
| Ama87I | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| Aor51HI | AGCGCT | 1 cut(s) | 210 |
| AoxI | GGCC | 4 cut(s) | 219, 271, 295, 875 |
| ApaI | GGGCCC | 1 cut(s) | 299 |
| ApeKI | GCWGC | 5 cut(s) | 170, 173, 257, 483, 653 |
| ApoI | RAATTY | 2 cut(s) | 423, 991 |
| Asp718I | GGTACC | 1 cut(s) | 607 |
| AspLEI | GCGC | 2 cut(s) | 170, 211 |
| AspS9I | GGNCC | 7 cut(s) | 183, 219, 295, 296, 385, 451, 672 |
| AsuC2I | CCSGG | 4 cut(s) | 217, 218, 299, 1192 |
| AsuHPI | GGTGA | 4 cut(s) | 388, 505, 577, 698 |
| AvaI | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| AvaII | GGWCC | 4 cut(s) | 183, 385, 451, 672 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 1 cut(s) | 299 |
| BanI | GGYRCC | 1 cut(s) | 607 |
| BanII | GRGCYC | 1 cut(s) | 299 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 488, 520 |
| BbrPI | CACGTG | 1 cut(s) | 764 |
| Bbv12I | GWGCWC | 1 cut(s) | 604 |
| BbvCI | CCTCAGC | 1 cut(s) | 35 |
| BbvI | GCAGC | 5 cut(s) | 182, 185, 244, 470, 640 |
| BccI | CCATC | 2 cut(s) | 394, 782 |
| BcnI | CCSGG | 4 cut(s) | 217, 218, 299, 1192 |
| BcoDI | GTCTC | 1 cut(s) | 1067 |
| BfaI | CTAG | 1 cut(s) | 873 |
| BfoI | RGCGCY | 1 cut(s) | 212 |
| BfrI | CTTAAG | 1 cut(s) | 148 |
| BfuAI | ACCTGC | 2 cut(s) | 507, 920 |
| BisI | GCNGC | 7 cut(s) | 145, 154, 171, 174, 258, 484, 654 |
| BlpI | GCTNAGC | 1 cut(s) | 1203 |
| BlsI | GCNGC | 7 cut(s) | 146, 155, 172, 175, 259, 485, 655 |
| BmcAI | AGTACT | 1 cut(s) | 644 |
| Bme1390I | CCNGG | 4 cut(s) | 217, 218, 299, 1192 |
| Bme18I | GGWCC | 4 cut(s) | 183, 385, 451, 672 |
| BmeT110I | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| BmgT120I | GGNCC | 7 cut(s) | 183, 219, 295, 296, 385, 451, 672 |
| BmiI | GGNNCC | 3 cut(s) | 185, 297, 609 |
| BmrFI | CCNGG | 4 cut(s) | 217, 218, 299, 1192 |
| BmrI | ACTGGG | 1 cut(s) | 1206 |
| BmsI | GCATC | 1 cut(s) | 1152 |
| BmuI | ACTGGG | 1 cut(s) | 1206 |
| Bpu10I | CCTNAGC | 3 cut(s) | 35, 603, 686 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1203 |
| BpuEI | CTTGAG | 1 cut(s) | 758 |
| BpuMI | CCSGG | 4 cut(s) | 217, 218, 299, 1192 |
| BsaAI | YACGTR | 1 cut(s) | 764 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1023 |
| BsaJI | CCNNGG | 2 cut(s) | 154, 216 |
| BsaWI | WCCGGW | 1 cut(s) | 349 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 843, 873, 990, 1020 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 280, 356, 764, 1197 |
| Bse118I | RCCGGY | 1 cut(s) | 453 |
| Bse1I | ACTGG | 1 cut(s) | 1212 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse3DI | GCAATG | 1 cut(s) | 146 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1023 |
| BseDI | CCNNGG | 2 cut(s) | 154, 216 |
| BseJI | GATNNNNATC | 1 cut(s) | 1023 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 280, 356, 764, 1197 |
| BseMI | GCAATG | 1 cut(s) | 146 |
| BseMII | CTCAG | 4 cut(s) | 26, 617, 700, 1194 |
| BseNI | ACTGG | 1 cut(s) | 1212 |
| BseRI | GAGGAG | 2 cut(s) | 52, 303 |
| BseSI | GKGCMC | 1 cut(s) | 299 |
| BseXI | GCAGC | 5 cut(s) | 182, 185, 244, 470, 640 |
| Bsh1236I | CGCG | 2 cut(s) | 123, 156 |
| BshFI | GGCC | 4 cut(s) | 221, 273, 297, 877 |
| BshNI | GGYRCC | 1 cut(s) | 607 |
| BsiHKAI | GWGCWC | 1 cut(s) | 604 |
| BsiHKCI | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| BsiSI | CCGG | 5 cut(s) | 217, 299, 350, 454, 1191 |
| BslFI | GGGAC | 2 cut(s) | 741, 1138 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 280, 356, 764, 1197 |
| BsmAI | GTCTC | 1 cut(s) | 1067 |
| BsmFI | GGGAC | 2 cut(s) | 741, 1138 |
| BsnI | GGCC | 4 cut(s) | 221, 273, 297, 877 |
| BsoBI | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| Bsp120I | GGGCCC | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 2 cut(s) | 299, 604 |
| Bsp143I | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1203 |
| BspACI | CCGC | 7 cut(s) | 14, 145, 154, 156, 277, 281, 914 |
| BspANI | GGCC | 4 cut(s) | 221, 273, 297, 877 |
| BspCNI | CTCAG | 4 cut(s) | 27, 616, 699, 1195 |
| BspFNI | CGCG | 2 cut(s) | 123, 156 |
| BspLI | GGNNCC | 3 cut(s) | 185, 297, 609 |
| BspMI | ACCTGC | 2 cut(s) | 507, 920 |
| BspPI | GGATC | 3 cut(s) | 61, 103, 1116 |
| BspQI | GCTCTTC | 1 cut(s) | 906 |
| BspT107I | GGYRCC | 1 cut(s) | 607 |
| BspTI | CTTAAG | 1 cut(s) | 148 |
| BsrBI | CCGCTC | 1 cut(s) | 16 |
| BsrDI | GCAATG | 1 cut(s) | 146 |
| BsrFI | RCCGGY | 1 cut(s) | 453 |
| BsrI | ACTGG | 1 cut(s) | 1212 |
| BssAI | RCCGGY | 1 cut(s) | 453 |
| BssECI | CCNNGG | 2 cut(s) | 154, 216 |
| BssMI | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| Bst4CI | ACNGT | 1 cut(s) | 493 |
| Bst6I | CTCTTC | 4 cut(s) | 491, 725, 906, 1036 |
| BstAFI | CTTAAG | 1 cut(s) | 148 |
| BstBAI | YACGTR | 1 cut(s) | 764 |
| BstC8I | GCNNGC | 5 cut(s) | 207, 242, 275, 279, 543 |
| BstDEI | CTNAG | 8 cut(s) | 35, 252, 431, 603, 615, 686, 923, 1203 |
| BstDSI | CCRYGG | 1 cut(s) | 154 |
| BstFNI | CGCG | 2 cut(s) | 123, 156 |
| BstH2I | RGCGCY | 1 cut(s) | 212 |
| BstHHI | GCGC | 2 cut(s) | 170, 211 |
| BstKTI | GATC | 5 cut(s) | 56, 111, 412, 1027, 1111 |
| BstMAI | GTCTC | 1 cut(s) | 1067 |
| BstMBI | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 150, 153, 246, 463, 869, 896, 926 |
| BstNSI | RCATGY | 1 cut(s) | 1004 |
| BstSCI | CCNGG | 4 cut(s) | 215, 216, 297, 1190 |
| BstSLI | GKGCMC | 1 cut(s) | 299 |
| BstUI | CGCG | 2 cut(s) | 123, 156 |
| BstV1I | GCAGC | 5 cut(s) | 182, 185, 244, 470, 640 |
| BstX2I | RGATCY | 1 cut(s) | 1108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BstYI | RGATCY | 1 cut(s) | 1108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuRI | GGCC | 4 cut(s) | 221, 273, 297, 877 |
| BtgI | CCRYGG | 1 cut(s) | 154 |
| BtgZI | GCGATG | 1 cut(s) | 20 |
| BtsI | GCAGTG | 1 cut(s) | 820 |
| BtsIMutI | CAGTG | 1 cut(s) | 820 |
| BveI | ACCTGC | 2 cut(s) | 507, 920 |
| Cac8I | GCNNGC | 5 cut(s) | 207, 242, 275, 279, 543 |
| CaiI | CAGNNNCTG | 1 cut(s) | 554 |
| CfoI | GCGC | 2 cut(s) | 170, 211 |
| Cfr10I | RCCGGY | 1 cut(s) | 453 |
| Cfr13I | GGNCC | 7 cut(s) | 183, 219, 295, 296, 385, 451, 672 |
| Cfr42I | CCGCGG | 1 cut(s) | 157 |
| Cfr9I | CCCGGG | 1 cut(s) | 216 |
| Csp6I | GTAC | 5 cut(s) | 505, 608, 643, 694, 998 |
| CviAII | CATG | 4 cut(s) | 180, 753, 1001, 1196 |
| CviQI | GTAC | 5 cut(s) | 505, 608, 643, 694, 998 |
| DdeI | CTNAG | 8 cut(s) | 35, 252, 431, 603, 615, 686, 923, 1203 |
| DpnI | GATC | 5 cut(s) | 55, 110, 411, 1026, 1110 |
| DpnII | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| DraI | TTTAAA | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 4 cut(s) | 491, 725, 906, 1036 |
| EarI | CTCTTC | 4 cut(s) | 491, 725, 906, 1036 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| Eco147I | AGGCCT | 1 cut(s) | 877 |
| Eco24I | GRGCYC | 1 cut(s) | 299 |
| Eco47I | GGWCC | 4 cut(s) | 183, 385, 451, 672 |
| Eco47III | AGCGCT | 1 cut(s) | 210 |
| Eco57I | CTGAAG | 2 cut(s) | 323, 531 |
| Eco72I | CACGTG | 1 cut(s) | 764 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| Eco88I | CYCGRG | 3 cut(s) | 216, 559, 1134 |
| EcoO109I | RGGNCCY | 2 cut(s) | 295, 385 |
| EcoT38I | GRGCYC | 1 cut(s) | 299 |
| FaeI | CATG | 4 cut(s) | 183, 756, 1004, 1199 |
| FaqI | GGGAC | 2 cut(s) | 741, 1138 |
| FatI | CATG | 4 cut(s) | 179, 752, 1000, 1195 |
| FauI | CCCGC | 1 cut(s) | 270 |
| FauNDI | CATATG | 1 cut(s) | 906 |
| FblI | GTMKAC | 1 cut(s) | 769 |
| Fnu4HI | GCNGC | 7 cut(s) | 145, 154, 171, 174, 258, 484, 654 |
| FriOI | GRGCYC | 1 cut(s) | 299 |
| Fsp4HI | GCNGC | 7 cut(s) | 145, 154, 171, 174, 258, 484, 654 |
| FspBI | CTAG | 1 cut(s) | 873 |
| GlaI | GCGC | 2 cut(s) | 169, 210 |
| GluI | GCNGC | 7 cut(s) | 145, 154, 171, 174, 258, 484, 654 |
| HaeII | RGCGCY | 1 cut(s) | 212 |
| HaeIII | GGCC | 4 cut(s) | 221, 273, 297, 877 |
| HapII | CCGG | 5 cut(s) | 217, 299, 350, 454, 1191 |
| HhaI | GCGC | 2 cut(s) | 170, 211 |
| Hin1II | CATG | 4 cut(s) | 183, 756, 1004, 1199 |
| Hin6I | GCGC | 2 cut(s) | 168, 209 |
| HinP1I | GCGC | 2 cut(s) | 168, 209 |
| HindIII | AAGCTT | 1 cut(s) | 543 |
| HinfI | GANTC | 3 cut(s) | 83, 557, 771 |
| HpaII | CCGG | 5 cut(s) | 217, 299, 350, 454, 1191 |
| HphI | GGTGA | 4 cut(s) | 388, 505, 577, 698 |
| Hpy166II | GTNNAC | 3 cut(s) | 590, 675, 770 |
| Hpy188I | TCNGA | 2 cut(s) | 342, 556 |
| Hpy188III | TCNNGA | 1 cut(s) | 1091 |
| Hpy8I | GTNNAC | 3 cut(s) | 590, 675, 770 |
| HpyAV | CCTTC | 4 cut(s) | 128, 198, 347, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 493 |
| HpyCH4IV | ACGT | 1 cut(s) | 763 |
| HpyCH4V | TGCA | 3 cut(s) | 1004, 1037, 1165 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 150, 153, 246, 463, 869, 896, 926 |
| HpyF3I | CTNAG | 8 cut(s) | 35, 252, 431, 603, 615, 686, 923, 1203 |
| HpySE526I | ACGT | 1 cut(s) | 763 |
| Hsp92II | CATG | 4 cut(s) | 183, 756, 1004, 1199 |
| HspAI | GCGC | 2 cut(s) | 168, 209 |
| KpnI | GGTACC | 1 cut(s) | 611 |
| KspI | CCGCGG | 1 cut(s) | 157 |
| Kzo9I | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| LguI | GCTCTTC | 1 cut(s) | 906 |
| LmnI | GCTCC | 1 cut(s) | 792 |
| Lsp1109I | GCAGC | 5 cut(s) | 182, 185, 244, 470, 640 |
| LweI | GCATC | 1 cut(s) | 1152 |
| MaeI | CTAG | 1 cut(s) | 873 |
| MaeII | ACGT | 1 cut(s) | 763 |
| MaeIII | GTNAC | 2 cut(s) | 20, 704 |
| MalI | GATC | 5 cut(s) | 55, 110, 411, 1026, 1110 |
| MbiI | CCGCTC | 1 cut(s) | 16 |
| MboI | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| MboII | GAAGA | 8 cut(s) | 143, 508, 588, 739, 742, 893, 974, 1053 |
| MflI | RGATCY | 1 cut(s) | 1108 |
| MhlI | GDGCHC | 2 cut(s) | 299, 604 |
| MluCI | AATT | 4 cut(s) | 405, 423, 991, 1174 |
| MlyI | GAGTC | 2 cut(s) | 551, 765 |
| MmeI | TCCRAC | 1 cut(s) | 513 |
| MseI | TTAA | 4 cut(s) | 149, 233, 393, 1173 |
| MspA1I | CMGCKG | 2 cut(s) | 156, 277 |
| MspCI | CTTAAG | 1 cut(s) | 148 |
| MspI | CCGG | 5 cut(s) | 217, 299, 350, 454, 1191 |
| MspR9I | CCNGG | 4 cut(s) | 217, 218, 299, 1192 |
| MvnI | CGCG | 2 cut(s) | 123, 156 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 150, 153, 246, 463, 869, 896, 926 |
| NciI | CCSGG | 4 cut(s) | 217, 218, 299, 1192 |
| NdeI | CATATG | 1 cut(s) | 906 |
| NdeII | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| NlaIII | CATG | 4 cut(s) | 183, 756, 1004, 1199 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 297, 609 |
| NmeAIII | GCCGAG | 1 cut(s) | 247 |
| NmuCI | GTSAC | 1 cut(s) | 704 |
| NspI | RCATGY | 1 cut(s) | 1004 |
| PceI | AGGCCT | 1 cut(s) | 877 |
| PciSI | GCTCTTC | 1 cut(s) | 906 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 7 cut(s) | 146, 155, 172, 175, 259, 485, 655 |
| PleI | GAGTC | 2 cut(s) | 551, 765 |
| PmaCI | CACGTG | 1 cut(s) | 764 |
| PmlI | CACGTG | 1 cut(s) | 764 |
| PpsI | GAGTC | 2 cut(s) | 551, 765 |
| Ppu21I | YACGTR | 1 cut(s) | 764 |
| PpuMI | RGGWCCY | 1 cut(s) | 385 |
| Psp5II | RGGWCCY | 1 cut(s) | 385 |
| PspCI | CACGTG | 1 cut(s) | 764 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 297, 609 |
| PspOMI | GGGCCC | 1 cut(s) | 295 |
| PspPI | GGNCC | 7 cut(s) | 183, 219, 295, 296, 385, 451, 672 |
| PspPPI | RGGWCCY | 1 cut(s) | 385 |
| PstNI | CAGNNNCTG | 1 cut(s) | 554 |
| PsuI | RGATCY | 1 cut(s) | 1108 |
| RsaI | GTAC | 5 cut(s) | 506, 609, 644, 695, 999 |
| RsaNI | GTAC | 5 cut(s) | 505, 608, 643, 694, 998 |
| SacII | CCGCGG | 1 cut(s) | 157 |
| SapI | GCTCTTC | 1 cut(s) | 906 |
| SaqAI | TTAA | 4 cut(s) | 149, 233, 393, 1173 |
| SatI | GCNGC | 7 cut(s) | 145, 154, 171, 174, 258, 484, 654 |
| Sau3AI | GATC | 5 cut(s) | 53, 108, 409, 1024, 1108 |
| Sau96I | GGNCC | 7 cut(s) | 183, 219, 295, 296, 385, 451, 672 |
| ScaI | AGTACT | 1 cut(s) | 644 |
| SchI | GAGTC | 2 cut(s) | 551, 765 |
| ScrFI | CCNGG | 4 cut(s) | 217, 218, 299, 1192 |
| SduI | GDGCHC | 2 cut(s) | 299, 604 |
| SfaNI | GCATC | 1 cut(s) | 1152 |
| Sfr303I | CCGCGG | 1 cut(s) | 157 |
| SgrBI | CCGCGG | 1 cut(s) | 157 |
| SinI | GGWCC | 4 cut(s) | 183, 385, 451, 672 |
| SmaI | CCCGGG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 2 cut(s) | 148, 773 |
| SmoI | CTYRAG | 2 cut(s) | 148, 773 |
| Sse9I | AATT | 4 cut(s) | 405, 423, 991, 1174 |
| SseBI | AGGCCT | 1 cut(s) | 877 |
| SsiI | CCGC | 7 cut(s) | 14, 145, 154, 156, 277, 281, 914 |
| SspMI | CTAG | 1 cut(s) | 873 |
| StuI | AGGCCT | 1 cut(s) | 877 |
| StyD4I | CCNGG | 4 cut(s) | 215, 216, 297, 1190 |
| TaaI | ACNGT | 1 cut(s) | 493 |
| TaiI | ACGT | 1 cut(s) | 766 |
| TaqI | TCGA | 2 cut(s) | 321, 975 |
| TasI | AATT | 4 cut(s) | 405, 423, 991, 1174 |
| TatI | WGTACW | 2 cut(s) | 642, 693 |
| TauI | GCSGC | 2 cut(s) | 147, 156 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| Tru1I | TTAA | 4 cut(s) | 149, 233, 393, 1173 |
| Tru9I | TTAA | 4 cut(s) | 149, 233, 393, 1173 |
| TscAI | CASTG | 1 cut(s) | 820 |
| TseFI | GTSAC | 1 cut(s) | 704 |
| TseI | GCWGC | 5 cut(s) | 170, 173, 257, 483, 653 |
| Tsp45I | GTSAC | 1 cut(s) | 704 |
| TspDTI | ATGAA | 2 cut(s) | 893, 1200 |
| TspMI | CCCGGG | 1 cut(s) | 216 |
| TspRI | CASTG | 1 cut(s) | 820 |
| Vha464I | CTTAAG | 1 cut(s) | 148 |
| VpaK11BI | GGWCC | 4 cut(s) | 183, 385, 451, 672 |
| XapI | RAATTY | 2 cut(s) | 423, 991 |
| XceI | RCATGY | 1 cut(s) | 1004 |
| XmaI | CCCGGG | 1 cut(s) | 216 |
| XmiI | GTMKAC | 1 cut(s) | 769 |
| XspI | CTAG | 1 cut(s) | 873 |
| ZrmI | AGTACT | 1 cut(s) | 644 |