Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 909 |
| AatII | GACGTC | 1 cut(s) | 757 |
| AccBSI | CCGCTC | 1 cut(s) | 565 |
| AciI | CCGC | 4 cut(s) | 132, 565, 769, 1027 |
| AclWI | GGATC | 3 cut(s) | 1066, 1068, 1079 |
| AcsI | RAATTY | 3 cut(s) | 600, 759, 886 |
| AcuI | CTGAAG | 1 cut(s) | 692 |
| AcyI | GRCGYC | 1 cut(s) | 754 |
| AdeI | CACNNNGTG | 1 cut(s) | 1096 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 134 |
| AflIII | ACRYGT | 2 cut(s) | 520, 1184 |
| AgeI | ACCGGT | 1 cut(s) | 1000 |
| AgsI | TTSAA | 5 cut(s) | 113, 353, 559, 1124, 1193 |
| AjnI | CCWGG | 2 cut(s) | 375, 1160 |
| AluBI | AGCT | 7 cut(s) | 22, 457, 644, 715, 914, 995, 1013 |
| AluI | AGCT | 7 cut(s) | 22, 457, 644, 715, 914, 995, 1013 |
| Alw26I | GTCTC | 3 cut(s) | 360, 794, 862 |
| AlwI | GGATC | 3 cut(s) | 1066, 1068, 1079 |
| Ama87I | CYCGRG | 1 cut(s) | 506 |
| AoxI | GGCC | 2 cut(s) | 379, 962 |
| ApeKI | GCWGC | 3 cut(s) | 124, 712, 1172 |
| ApoI | RAATTY | 3 cut(s) | 600, 759, 886 |
| AseI | ATTAAT | 1 cut(s) | 396 |
| AsiGI | ACCGGT | 1 cut(s) | 1000 |
| AspLEI | GCGC | 1 cut(s) | 450 |
| AspS9I | GGNCC | 2 cut(s) | 379, 1158 |
| AsuC2I | CCSGG | 2 cut(s) | 1148, 1211 |
| AsuHPI | GGTGA | 2 cut(s) | 968, 1199 |
| AvaI | CYCGRG | 1 cut(s) | 506 |
| AvaII | GGWCC | 1 cut(s) | 1158 |
| BamHI | GGATCC | 1 cut(s) | 1071 |
| BbsI | GAAGAC | 1 cut(s) | 131 |
| BbvI | GCAGC | 3 cut(s) | 136, 724, 1159 |
| BccI | CCATC | 4 cut(s) | 186, 973, 1095, 1124 |
| BceAI | ACGGC | 1 cut(s) | 960 |
| BciT130I | CCWGG | 2 cut(s) | 377, 1162 |
| BciVI | GTATCC | 1 cut(s) | 1105 |
| BclI | TGATCA | 2 cut(s) | 252, 1140 |
| BcnI | CCSGG | 2 cut(s) | 1148, 1211 |
| BcoDI | GTCTC | 3 cut(s) | 360, 794, 862 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfuI | GTATCC | 1 cut(s) | 1105 |
| BisI | GCNGC | 4 cut(s) | 125, 566, 713, 1173 |
| BlsI | GCNGC | 4 cut(s) | 126, 567, 714, 1174 |
| Bme1390I | CCNGG | 4 cut(s) | 377, 1148, 1162, 1211 |
| Bme18I | GGWCC | 1 cut(s) | 1158 |
| BmeT110I | CYCGRG | 1 cut(s) | 506 |
| BmgT120I | GGNCC | 2 cut(s) | 379, 1158 |
| BmiI | GGNNCC | 1 cut(s) | 1073 |
| BmrFI | CCNGG | 4 cut(s) | 377, 1148, 1162, 1211 |
| BmsI | GCATC | 2 cut(s) | 81, 837 |
| BoxI | GACNNNNGTC | 1 cut(s) | 753 |
| BpiI | GAAGAC | 1 cut(s) | 131 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 203, 235 |
| BpmI | CTGGAG | 2 cut(s) | 386, 886 |
| BpuEI | CTTGAG | 1 cut(s) | 885 |
| BpuMI | CCSGG | 2 cut(s) | 1148, 1211 |
| BsaAI | YACGTR | 1 cut(s) | 1185 |
| BsaHI | GRCGYC | 1 cut(s) | 754 |
| BsaJI | CCNNGG | 5 cut(s) | 147, 241, 376, 505, 1161 |
| BsaWI | WCCGGW | 2 cut(s) | 165, 1000 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 770, 800 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 134 |
| Bse118I | RCCGGY | 1 cut(s) | 1000 |
| Bse1I | ACTGG | 1 cut(s) | 1042 |
| Bse3DI | GCAATG | 2 cut(s) | 436, 457 |
| BseBI | CCWGG | 2 cut(s) | 377, 1162 |
| BseDI | CCNNGG | 5 cut(s) | 147, 241, 376, 505, 1161 |
| BseGI | GGATG | 3 cut(s) | 157, 178, 1171 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BseMI | GCAATG | 2 cut(s) | 436, 457 |
| BseMII | CTCAG | 2 cut(s) | 45, 619 |
| BseNI | ACTGG | 1 cut(s) | 1042 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| BseXI | GCAGC | 3 cut(s) | 136, 724, 1159 |
| BseYI | CCCAGC | 1 cut(s) | 128 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1001 |
| BshFI | GGCC | 2 cut(s) | 381, 964 |
| BshTI | ACCGGT | 1 cut(s) | 1000 |
| BsiEI | CGRYCG | 1 cut(s) | 1001 |
| BsiHKCI | CYCGRG | 1 cut(s) | 506 |
| BsiSI | CCGG | 5 cut(s) | 166, 385, 1001, 1148, 1210 |
| BslFI | GGGAC | 1 cut(s) | 1048 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BsmAI | GTCTC | 3 cut(s) | 360, 794, 862 |
| BsmFI | GGGAC | 1 cut(s) | 1048 |
| BsnI | GGCC | 2 cut(s) | 381, 964 |
| BsoBI | CYCGRG | 1 cut(s) | 506 |
| Bsp143I | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| Bsp19I | CCATGG | 1 cut(s) | 241 |
| BspACI | CCGC | 4 cut(s) | 132, 565, 769, 1027 |
| BspANI | GGCC | 2 cut(s) | 381, 964 |
| BspCNI | CTCAG | 2 cut(s) | 46, 618 |
| BspHI | TCATGA | 1 cut(s) | 1063 |
| BspLI | GGNNCC | 1 cut(s) | 1073 |
| BspPI | GGATC | 3 cut(s) | 1066, 1068, 1079 |
| BsrBI | CCGCTC | 1 cut(s) | 565 |
| BsrDI | GCAATG | 2 cut(s) | 436, 457 |
| BsrFI | RCCGGY | 1 cut(s) | 1000 |
| BsrI | ACTGG | 1 cut(s) | 1042 |
| BssAI | RCCGGY | 1 cut(s) | 1000 |
| BssECI | CCNNGG | 5 cut(s) | 147, 241, 376, 505, 1161 |
| BssMI | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| BssNI | GRCGYC | 1 cut(s) | 754 |
| BssT1I | CCWWGG | 1 cut(s) | 241 |
| Bst2UI | CCWGG | 2 cut(s) | 377, 1162 |
| Bst4CI | ACNGT | 3 cut(s) | 332, 674, 1107 |
| Bst6I | CTCTTC | 2 cut(s) | 202, 265 |
| BstACI | GRCGYC | 1 cut(s) | 754 |
| BstBAI | YACGTR | 1 cut(s) | 1185 |
| BstC8I | GCNNGC | 4 cut(s) | 459, 831, 852, 1011 |
| BstDEI | CTNAG | 4 cut(s) | 54, 573, 605, 1229 |
| BstDSI | CCRYGG | 1 cut(s) | 241 |
| BstF5I | GGATG | 3 cut(s) | 157, 178, 1171 |
| BstHHI | GCGC | 1 cut(s) | 450 |
| BstKTI | GATC | 5 cut(s) | 255, 706, 1063, 1074, 1143 |
| BstMAI | GTCTC | 3 cut(s) | 360, 794, 862 |
| BstMBI | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| BstMCI | CGRYCG | 1 cut(s) | 1001 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 28, 454, 548, 851 |
| BstNI | CCWGG | 2 cut(s) | 377, 1162 |
| BstNSI | RCATGY | 2 cut(s) | 524, 833 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 753 |
| BstSCI | CCNGG | 4 cut(s) | 375, 1146, 1160, 1209 |
| BstV1I | GCAGC | 3 cut(s) | 136, 724, 1159 |
| BstV2I | GAAGAC | 1 cut(s) | 131 |
| BstX2I | RGATCY | 1 cut(s) | 1071 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 242 |
| BstYI | RGATCY | 1 cut(s) | 1071 |
| BsuI | GTATCC | 1 cut(s) | 1105 |
| BsuRI | GGCC | 2 cut(s) | 381, 964 |
| BtgI | CCRYGG | 1 cut(s) | 241 |
| BtgZI | GCGATG | 1 cut(s) | 860 |
| BtsCI | GGATG | 3 cut(s) | 157, 178, 1171 |
| Cac8I | GCNNGC | 4 cut(s) | 459, 831, 852, 1011 |
| CciI | TCATGA | 1 cut(s) | 1063 |
| CfoI | GCGC | 1 cut(s) | 450 |
| Cfr10I | RCCGGY | 1 cut(s) | 1000 |
| Cfr13I | GGNCC | 2 cut(s) | 379, 1158 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CspAI | ACCGGT | 1 cut(s) | 1000 |
| CviAII | CATG | 7 cut(s) | 242, 291, 494, 521, 830, 952, 1064 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 4 cut(s) | 54, 573, 605, 1229 |
| DpnI | GATC | 5 cut(s) | 254, 705, 1062, 1073, 1142 |
| DpnII | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| DraI | TTTAAA | 2 cut(s) | 441, 820 |
| DraIII | CACNNNGTG | 1 cut(s) | 1096 |
| Eam1104I | CTCTTC | 2 cut(s) | 202, 265 |
| EarI | CTCTTC | 2 cut(s) | 202, 265 |
| EciI | GGCGGA | 1 cut(s) | 1042 |
| Eco130I | CCWWGG | 1 cut(s) | 241 |
| Eco47I | GGWCC | 1 cut(s) | 1158 |
| Eco57I | CTGAAG | 1 cut(s) | 692 |
| Eco88I | CYCGRG | 1 cut(s) | 506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoRI | GAATTC | 1 cut(s) | 759 |
| EcoRII | CCWGG | 2 cut(s) | 375, 1160 |
| EcoT14I | CCWWGG | 1 cut(s) | 241 |
| ErhI | CCWWGG | 1 cut(s) | 241 |
| FaeI | CATG | 7 cut(s) | 245, 294, 497, 524, 833, 955, 1067 |
| FaqI | GGGAC | 1 cut(s) | 1048 |
| FatI | CATG | 7 cut(s) | 241, 290, 493, 520, 829, 951, 1063 |
| FauNDI | CATATG | 1 cut(s) | 371 |
| FbaI | TGATCA | 2 cut(s) | 252, 1140 |
| Fnu4HI | GCNGC | 4 cut(s) | 125, 566, 713, 1173 |
| FokI | GGATG | 3 cut(s) | 164, 165, 1178 |
| Fsp4HI | GCNGC | 4 cut(s) | 125, 566, 713, 1173 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GlaI | GCGC | 1 cut(s) | 449 |
| GluI | GCNGC | 4 cut(s) | 125, 566, 713, 1173 |
| GsaI | CCCAGC | 1 cut(s) | 132 |
| GsuI | CTGGAG | 2 cut(s) | 386, 886 |
| HaeIII | GGCC | 2 cut(s) | 381, 964 |
| HapII | CCGG | 5 cut(s) | 166, 385, 1001, 1148, 1210 |
| HhaI | GCGC | 1 cut(s) | 450 |
| Hin1I | GRCGYC | 1 cut(s) | 754 |
| Hin1II | CATG | 7 cut(s) | 245, 294, 497, 524, 833, 955, 1067 |
| Hin6I | GCGC | 1 cut(s) | 448 |
| HinP1I | GCGC | 1 cut(s) | 448 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HinfI | GANTC | 3 cut(s) | 41, 870, 1193 |
| HpaII | CCGG | 5 cut(s) | 166, 385, 1001, 1148, 1210 |
| HphI | GGTGA | 2 cut(s) | 968, 1199 |
| Hpy166II | GTNNAC | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 5 cut(s) | 55, 151, 257, 269, 745 |
| Hpy188III | TCNNGA | 7 cut(s) | 79, 235, 250, 336, 353, 403, 1064 |
| Hpy8I | GTNNAC | 1 cut(s) | 160 |
| Hpy99I | CGWCG | 2 cut(s) | 756, 759 |
| HpyAV | CCTTC | 2 cut(s) | 553, 1086 |
| HpyCH4III | ACNGT | 3 cut(s) | 332, 674, 1107 |
| HpyCH4IV | ACGT | 4 cut(s) | 323, 663, 754, 1184 |
| HpyCH4V | TGCA | 7 cut(s) | 72, 294, 829, 854, 1009, 1239, 1256 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 28, 454, 548, 851 |
| HpyF3I | CTNAG | 4 cut(s) | 54, 573, 605, 1229 |
| HpySE526I | ACGT | 4 cut(s) | 323, 663, 754, 1184 |
| Hsp92I | GRCGYC | 1 cut(s) | 754 |
| Hsp92II | CATG | 7 cut(s) | 245, 294, 497, 524, 833, 955, 1067 |
| HspAI | GCGC | 1 cut(s) | 448 |
| Ksp22I | TGATCA | 2 cut(s) | 252, 1140 |
| Kzo9I | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| LmnI | GCTCC | 3 cut(s) | 121, 224, 562 |
| Lsp1109I | GCAGC | 3 cut(s) | 136, 724, 1159 |
| LweI | GCATC | 2 cut(s) | 81, 837 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 4 cut(s) | 323, 663, 754, 1184 |
| MaeIII | GTNAC | 4 cut(s) | 319, 342, 484, 624 |
| MalI | GATC | 5 cut(s) | 254, 705, 1062, 1073, 1142 |
| MbiI | CCGCTC | 1 cut(s) | 565 |
| MboI | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| MboII | GAAGA | 5 cut(s) | 101, 131, 219, 282, 698 |
| MflI | RGATCY | 1 cut(s) | 1071 |
| MluCI | AATT | 5 cut(s) | 600, 658, 725, 759, 886 |
| MlyI | GAGTC | 1 cut(s) | 864 |
| MmeI | TCCRAC | 2 cut(s) | 569, 1089 |
| MseI | TTAA | 9 cut(s) | 17, 90, 105, 302, 396, 440, 633, 819, 1101 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspI | CCGG | 5 cut(s) | 166, 385, 1001, 1148, 1210 |
| MspR9I | CCNGG | 4 cut(s) | 377, 1148, 1162, 1211 |
| MvaI | CCWGG | 2 cut(s) | 377, 1162 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 28, 454, 548, 851 |
| NciI | CCSGG | 2 cut(s) | 1148, 1211 |
| NcoI | CCATGG | 1 cut(s) | 241 |
| NdeI | CATATG | 1 cut(s) | 371 |
| NdeII | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| NlaIII | CATG | 7 cut(s) | 245, 294, 497, 524, 833, 955, 1067 |
| NlaIV | GGNNCC | 1 cut(s) | 1073 |
| NmuCI | GTSAC | 2 cut(s) | 342, 484 |
| NspI | RCATGY | 2 cut(s) | 524, 833 |
| PaeI | GCATGC | 1 cut(s) | 833 |
| PagI | TCATGA | 1 cut(s) | 1063 |
| PciI | ACATGT | 1 cut(s) | 520 |
| PfeI | GAWTC | 2 cut(s) | 41, 1193 |
| PinAI | ACCGGT | 1 cut(s) | 1000 |
| PkrI | GCNGC | 4 cut(s) | 126, 567, 714, 1174 |
| PleI | GAGTC | 1 cut(s) | 864 |
| PpsI | GAGTC | 1 cut(s) | 864 |
| Ppu21I | YACGTR | 1 cut(s) | 1185 |
| PscI | ACATGT | 1 cut(s) | 520 |
| PshAI | GACNNNNGTC | 1 cut(s) | 753 |
| PshBI | ATTAAT | 1 cut(s) | 396 |
| PsiI | TTATAA | 1 cut(s) | 909 |
| Psp6I | CCWGG | 2 cut(s) | 375, 1160 |
| PspFI | CCCAGC | 1 cut(s) | 128 |
| PspGI | CCWGG | 2 cut(s) | 375, 1160 |
| PspN4I | GGNNCC | 1 cut(s) | 1073 |
| PspPI | GGNCC | 2 cut(s) | 379, 1158 |
| PsuI | RGATCY | 1 cut(s) | 1071 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| SaqAI | TTAA | 9 cut(s) | 17, 90, 105, 302, 396, 440, 633, 819, 1101 |
| SatI | GCNGC | 4 cut(s) | 125, 566, 713, 1173 |
| Sau3AI | GATC | 5 cut(s) | 252, 703, 1060, 1071, 1140 |
| Sau96I | GGNCC | 2 cut(s) | 379, 1158 |
| SchI | GAGTC | 1 cut(s) | 864 |
| ScrFI | CCNGG | 4 cut(s) | 377, 1148, 1162, 1211 |
| SfaNI | GCATC | 2 cut(s) | 81, 837 |
| SinI | GGWCC | 1 cut(s) | 1158 |
| SmlI | CTYRAG | 1 cut(s) | 900 |
| SmoI | CTYRAG | 1 cut(s) | 900 |
| SphI | GCATGC | 1 cut(s) | 833 |
| Sse9I | AATT | 5 cut(s) | 600, 658, 725, 759, 886 |
| SsiI | CCGC | 4 cut(s) | 132, 565, 769, 1027 |
| SspI | AATATT | 1 cut(s) | 824 |
| SspMI | CTAG | 1 cut(s) | 45 |
| StyD4I | CCNGG | 4 cut(s) | 375, 1146, 1160, 1209 |
| StyI | CCWWGG | 1 cut(s) | 241 |
| TaaI | ACNGT | 3 cut(s) | 332, 674, 1107 |
| TaiI | ACGT | 4 cut(s) | 326, 666, 757, 1187 |
| TaqI | TCGA | 3 cut(s) | 78, 757, 997 |
| TaqII | GACCGA | 1 cut(s) | 765 |
| TasI | AATT | 5 cut(s) | 600, 658, 725, 759, 886 |
| TauI | GCSGC | 1 cut(s) | 568 |
| TfiI | GAWTC | 2 cut(s) | 41, 1193 |
| Tru1I | TTAA | 9 cut(s) | 17, 90, 105, 302, 396, 440, 633, 819, 1101 |
| Tru9I | TTAA | 9 cut(s) | 17, 90, 105, 302, 396, 440, 633, 819, 1101 |
| TseFI | GTSAC | 2 cut(s) | 342, 484 |
| TseI | GCWGC | 3 cut(s) | 124, 712, 1172 |
| Tsp45I | GTSAC | 2 cut(s) | 342, 484 |
| TspDTI | ATGAA | 3 cut(s) | 168, 683, 752 |
| VpaK11BI | GGWCC | 1 cut(s) | 1158 |
| VspI | ATTAAT | 1 cut(s) | 396 |
| XapI | RAATTY | 3 cut(s) | 600, 759, 886 |
| XceI | RCATGY | 2 cut(s) | 524, 833 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 972 |
| XspI | CTAG | 1 cut(s) | 45 |
| ZraI | GACGTC | 1 cut(s) | 755 |