Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 15 - 139 | 3e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 346 |
| AclWI | GGATC | 1 cut(s) | 388 |
| AfaI | GTAC | 1 cut(s) | 59 |
| AgsI | TTSAA | 4 cut(s) | 194, 220, 274, 493 |
| AhlI | ACTAGT | 2 cut(s) | 205, 259 |
| AluBI | AGCT | 3 cut(s) | 26, 287, 300 |
| AluI | AGCT | 3 cut(s) | 26, 287, 300 |
| Alw26I | GTCTC | 2 cut(s) | 152, 236 |
| AlwI | GGATC | 1 cut(s) | 388 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 134 |
| Aor13HI | TCCGGA | 1 cut(s) | 346 |
| ApeKI | GCWGC | 3 cut(s) | 83, 134, 284 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 235, 267 |
| AsuHPI | GGTGA | 2 cut(s) | 128, 153 |
| BbvI | GCAGC | 3 cut(s) | 70, 121, 296 |
| BccI | CCATC | 1 cut(s) | 44 |
| BcoDI | GTCTC | 2 cut(s) | 152, 236 |
| BcuI | ACTAGT | 2 cut(s) | 205, 259 |
| BfaI | CTAG | 4 cut(s) | 12, 27, 206, 260 |
| BisI | GCNGC | 3 cut(s) | 84, 135, 285 |
| BlpI | GCTNAGC | 1 cut(s) | 372 |
| BlsI | GCNGC | 3 cut(s) | 85, 136, 286 |
| BmsI | GCATC | 2 cut(s) | 13, 271 |
| Bpu10I | CCTNAGC | 1 cut(s) | 301 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 372 |
| BsaWI | WCCGGW | 2 cut(s) | 16, 346 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 132, 162 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseAI | TCCGGA | 1 cut(s) | 346 |
| BseGI | GGATG | 3 cut(s) | 312, 343, 487 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseMII | CTCAG | 1 cut(s) | 386 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BseXI | GCAGC | 3 cut(s) | 70, 121, 296 |
| BsiSI | CCGG | 2 cut(s) | 17, 347 |
| BsmAI | GTCTC | 2 cut(s) | 152, 236 |
| BsmBI | CGTCTC | 1 cut(s) | 152 |
| Bsp13I | TCCGGA | 1 cut(s) | 346 |
| Bsp143I | GATC | 2 cut(s) | 289, 380 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 372 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspEI | TCCGGA | 1 cut(s) | 346 |
| BspHI | TCATGA | 1 cut(s) | 471 |
| BspPI | GGATC | 1 cut(s) | 388 |
| BspQI | GCTCTTC | 1 cut(s) | 192 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BssMI | GATC | 2 cut(s) | 289, 380 |
| Bst6I | CTCTTC | 1 cut(s) | 192 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 67 |
| BstDEI | CTNAG | 3 cut(s) | 101, 301, 372 |
| BstF5I | GGATG | 3 cut(s) | 312, 343, 487 |
| BstKTI | GATC | 2 cut(s) | 292, 383 |
| BstMAI | GTCTC | 2 cut(s) | 152, 236 |
| BstMBI | GATC | 2 cut(s) | 289, 380 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 28, 62, 134, 413 |
| BstNSI | RCATGY | 1 cut(s) | 269 |
| BstV1I | GCAGC | 3 cut(s) | 70, 121, 296 |
| BstX2I | RGATCY | 1 cut(s) | 380 |
| BstYI | RGATCY | 1 cut(s) | 380 |
| BtsCI | GGATG | 3 cut(s) | 312, 343, 487 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 67 |
| CaiI | CAGNNNCTG | 1 cut(s) | 134 |
| CciI | TCATGA | 1 cut(s) | 471 |
| Csp6I | GTAC | 1 cut(s) | 58 |
| CviAII | CATG | 7 cut(s) | 124, 170, 266, 368, 413, 426, 472 |
| CviJI | RGCY | 9 cut(s) | 11, 26, 31, 83, 134, 185, 287, 300, 323 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 26, 31, 83, 134, 185, 287, 300, 323 |
| CviQI | GTAC | 1 cut(s) | 58 |
| DdeI | CTNAG | 3 cut(s) | 101, 301, 372 |
| DpnI | GATC | 2 cut(s) | 291, 382 |
| DpnII | GATC | 2 cut(s) | 289, 380 |
| Eam1104I | CTCTTC | 1 cut(s) | 192 |
| EarI | CTCTTC | 1 cut(s) | 192 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 152 |
| FaeI | CATG | 7 cut(s) | 127, 173, 269, 371, 416, 429, 475 |
| FatI | CATG | 7 cut(s) | 123, 169, 265, 367, 412, 425, 471 |
| FauNDI | CATATG | 1 cut(s) | 88 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 135, 285 |
| FokI | GGATG | 3 cut(s) | 319, 330, 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 135, 285 |
| FspBI | CTAG | 4 cut(s) | 12, 27, 206, 260 |
| GluI | GCNGC | 3 cut(s) | 84, 135, 285 |
| HapII | CCGG | 2 cut(s) | 17, 347 |
| Hin1II | CATG | 7 cut(s) | 127, 173, 269, 371, 416, 429, 475 |
| HindIII | AAGCTT | 1 cut(s) | 298 |
| HinfI | GANTC | 3 cut(s) | 274, 364, 434 |
| HpaII | CCGG | 2 cut(s) | 17, 347 |
| HphI | GGTGA | 2 cut(s) | 128, 153 |
| Hpy188I | TCNGA | 1 cut(s) | 439 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 278, 347, 472, 490 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 65, 86, 173, 265, 284, 450 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 28, 62, 134, 413 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 301, 372 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| Hsp92II | CATG | 7 cut(s) | 127, 173, 269, 371, 416, 429, 475 |
| Kpn2I | TCCGGA | 1 cut(s) | 346 |
| Kzo9I | GATC | 2 cut(s) | 289, 380 |
| LguI | GCTCTTC | 1 cut(s) | 192 |
| LmnI | GCTCC | 2 cut(s) | 19, 461 |
| LpnPI | CCDG | 6 cut(s) | 17, 30, 51, 99, 114, 360 |
| Lsp1109I | GCAGC | 3 cut(s) | 70, 121, 296 |
| LweI | GCATC | 2 cut(s) | 13, 271 |
| MaeI | CTAG | 4 cut(s) | 12, 27, 206, 260 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MaeIII | GTNAC | 1 cut(s) | 255 |
| MalI | GATC | 2 cut(s) | 291, 382 |
| MboI | GATC | 2 cut(s) | 289, 380 |
| MboII | GAAGA | 1 cut(s) | 179 |
| MfeI | CAATTG | 1 cut(s) | 152 |
| MflI | RGATCY | 1 cut(s) | 380 |
| MluCI | AATT | 4 cut(s) | 152, 176, 247, 502 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MnlI | CCTC | 3 cut(s) | 70, 73, 153 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 1 cut(s) | 346 |
| MseI | TTAA | 1 cut(s) | 508 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspI | CCGG | 2 cut(s) | 17, 347 |
| MunI | CAATTG | 1 cut(s) | 152 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 28, 62, 134, 413 |
| NdeI | CATATG | 1 cut(s) | 88 |
| NdeII | GATC | 2 cut(s) | 289, 380 |
| NlaIII | CATG | 7 cut(s) | 127, 173, 269, 371, 416, 429, 475 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 269 |
| PagI | TCATGA | 1 cut(s) | 471 |
| PciSI | GCTCTTC | 1 cut(s) | 192 |
| PfeI | GAWTC | 2 cut(s) | 274, 364 |
| PkrI | GCNGC | 3 cut(s) | 85, 136, 286 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 134 |
| PsuI | RGATCY | 1 cut(s) | 380 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RsaI | GTAC | 1 cut(s) | 59 |
| RsaNI | GTAC | 1 cut(s) | 58 |
| SapI | GCTCTTC | 1 cut(s) | 192 |
| SaqAI | TTAA | 1 cut(s) | 508 |
| SatI | GCNGC | 3 cut(s) | 84, 135, 285 |
| Sau3AI | GATC | 2 cut(s) | 289, 380 |
| SchI | GAGTC | 1 cut(s) | 443 |
| SetI | ASST | 8 cut(s) | 28, 75, 118, 145, 166, 199, 289, 302 |
| SfaNI | GCATC | 2 cut(s) | 13, 271 |
| SpeI | ACTAGT | 2 cut(s) | 205, 259 |
| Sse9I | AATT | 4 cut(s) | 152, 176, 247, 502 |
| SspMI | CTAG | 4 cut(s) | 12, 27, 206, 260 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TasI | AATT | 4 cut(s) | 152, 176, 247, 502 |
| TfiI | GAWTC | 2 cut(s) | 274, 364 |
| Tru1I | TTAA | 1 cut(s) | 508 |
| Tru9I | TTAA | 1 cut(s) | 508 |
| TseI | GCWGC | 3 cut(s) | 83, 134, 284 |
| TspDTI | ATGAA | 7 cut(s) | 112, 158, 215, 333, 350, 356, 414 |
| TspGWI | ACGGA | 1 cut(s) | 457 |
| XceI | RCATGY | 1 cut(s) | 269 |
| XspI | CTAG | 4 cut(s) | 12, 27, 206, 260 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |