ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 83 |
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AciI | CCGC | 2 cut(s) | 229, 1025 |
| AclWI | GGATC | 3 cut(s) | 163, 300, 1125 |
| AcsI | RAATTY | 2 cut(s) | 198, 922 |
| AcuI | CTGAAG | 1 cut(s) | 723 |
| AfaI | GTAC | 3 cut(s) | 101, 249, 334 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 662, 805, 1212 |
| AgsI | TTSAA | 5 cut(s) | 238, 548, 566, 875, 980 |
| AluBI | AGCT | 4 cut(s) | 701, 827, 1142, 1230 |
| AluI | AGCT | 4 cut(s) | 701, 827, 1142, 1230 |
| Alw26I | GTCTC | 1 cut(s) | 625 |
| AlwI | GGATC | 3 cut(s) | 163, 300, 1125 |
| AoxI | GGCC | 1 cut(s) | 405 |
| ApeKI | GCWGC | 3 cut(s) | 107, 761, 899 |
| ApoI | RAATTY | 2 cut(s) | 198, 922 |
| AseI | ATTAAT | 2 cut(s) | 678, 1188 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 923 |
| AspLEI | GCGC | 1 cut(s) | 84 |
| AspS9I | GGNCC | 3 cut(s) | 383, 406, 796 |
| AsuC2I | CCSGG | 3 cut(s) | 128, 413, 1207 |
| AsuHPI | GGTGA | 5 cut(s) | 44, 223, 287, 839, 1031 |
| AvaII | GGWCC | 2 cut(s) | 383, 796 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BbsI | GAAGAC | 1 cut(s) | 617 |
| BbvCI | CCTCAGC | 1 cut(s) | 617 |
| BbvI | GCAGC | 3 cut(s) | 94, 748, 886 |
| BccI | CCATC | 4 cut(s) | 442, 612, 680, 701 |
| BcnI | CCSGG | 3 cut(s) | 128, 413, 1207 |
| BcoDI | GTCTC | 1 cut(s) | 625 |
| BfaI | CTAG | 4 cut(s) | 573, 660, 1047, 1231 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 413 |
| BisI | GCNGC | 3 cut(s) | 108, 762, 900 |
| BlpI | GCTNAGC | 2 cut(s) | 771, 1218 |
| BlsI | GCNGC | 3 cut(s) | 109, 763, 901 |
| Bme1390I | CCNGG | 3 cut(s) | 128, 413, 1207 |
| Bme18I | GGWCC | 2 cut(s) | 383, 796 |
| BmgT120I | GGNCC | 3 cut(s) | 383, 406, 796 |
| BmiI | GGNNCC | 3 cut(s) | 193, 377, 1204 |
| BmrFI | CCNGG | 3 cut(s) | 128, 413, 1207 |
| BmsI | GCATC | 2 cut(s) | 140, 1074 |
| BpiI | GAAGAC | 1 cut(s) | 617 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 619, 651 |
| Bpu10I | CCTNAGC | 2 cut(s) | 617, 1143 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 771, 1218 |
| BpuMI | CCSGG | 3 cut(s) | 128, 413, 1207 |
| BsaAI | YACGTR | 1 cut(s) | 428 |
| BsaI | GGTCTC | 1 cut(s) | 625 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 379, 850 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 703, 717, 733, 747 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 662, 805, 1212 |
| Bse1I | ACTGG | 2 cut(s) | 334, 751 |
| Bse3DI | GCAATG | 2 cut(s) | 117, 298 |
| BseDI | CCNNGG | 3 cut(s) | 207, 379, 850 |
| BseGI | GGATG | 2 cut(s) | 604, 691 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 662, 805, 1212 |
| BseMI | GCAATG | 2 cut(s) | 117, 298 |
| BseMII | CTCAG | 7 cut(s) | 31, 403, 608, 650, 921, 1157, 1209 |
| BseNI | ACTGG | 2 cut(s) | 334, 751 |
| BseRI | GAGGAG | 1 cut(s) | 643 |
| BseXI | GCAGC | 3 cut(s) | 94, 748, 886 |
| BseYI | CCCAGC | 1 cut(s) | 1226 |
| BshFI | GGCC | 1 cut(s) | 407 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BsiSI | CCGG | 3 cut(s) | 127, 413, 1206 |
| BslFI | GGGAC | 1 cut(s) | 1147 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 662, 805, 1212 |
| BsmAI | GTCTC | 1 cut(s) | 625 |
| BsmFI | GGGAC | 1 cut(s) | 1147 |
| BsmI | GAATGC | 1 cut(s) | 21 |
| BsnI | GGCC | 1 cut(s) | 407 |
| Bso31I | GGTCTC | 1 cut(s) | 625 |
| Bsp1407I | TGTACA | 1 cut(s) | 99 |
| Bsp143I | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 771, 1218 |
| BspACI | CCGC | 2 cut(s) | 229, 1025 |
| BspANI | GGCC | 1 cut(s) | 407 |
| BspCNI | CTCAG | 7 cut(s) | 30, 402, 609, 649, 922, 1156, 1210 |
| BspHI | TCATGA | 1 cut(s) | 486 |
| BspLI | GGNNCC | 3 cut(s) | 193, 377, 1204 |
| BspPI | GGATC | 3 cut(s) | 163, 300, 1125 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BspTNI | GGTCTC | 1 cut(s) | 625 |
| BsrDI | GCAATG | 2 cut(s) | 117, 298 |
| BsrGI | TGTACA | 1 cut(s) | 99 |
| BsrI | ACTGG | 2 cut(s) | 334, 751 |
| BssECI | CCNNGG | 3 cut(s) | 207, 379, 850 |
| BssMI | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| BssT1I | CCWWGG | 3 cut(s) | 207, 379, 850 |
| Bst4CI | ACNGT | 5 cut(s) | 463, 582, 911, 1007, 1130 |
| Bst6I | CTCTTC | 1 cut(s) | 909 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 309 |
| BstAUI | TGTACA | 1 cut(s) | 99 |
| BstBAI | YACGTR | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 2 cut(s) | 399, 1035 |
| BstDEI | CTNAG | 8 cut(s) | 17, 389, 617, 636, 771, 930, 1143, 1218 |
| BstF5I | GGATG | 2 cut(s) | 604, 691 |
| BstHHI | GCGC | 1 cut(s) | 84 |
| BstKTI | GATC | 4 cut(s) | 40, 158, 295, 1120 |
| BstMAI | GTCTC | 1 cut(s) | 625 |
| BstMBI | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 309, 413, 622, 698, 767, 824, 1043 |
| BstNSI | RCATGY | 3 cut(s) | 307, 401, 788 |
| BstSCI | CCNGG | 3 cut(s) | 126, 411, 1205 |
| BstV1I | GCAGC | 3 cut(s) | 94, 748, 886 |
| BstV2I | GAAGAC | 1 cut(s) | 617 |
| BsuRI | GGCC | 1 cut(s) | 407 |
| BtsCI | GGATG | 2 cut(s) | 604, 691 |
| BtsI | GCAGTG | 1 cut(s) | 91 |
| BtsIMutI | CAGTG | 3 cut(s) | 91, 165, 916 |
| Cac8I | GCNNGC | 2 cut(s) | 399, 1035 |
| CciI | TCATGA | 1 cut(s) | 486 |
| CfoI | GCGC | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 3 cut(s) | 383, 406, 796 |
| CseI | GACGC | 2 cut(s) | 622, 1180 |
| Csp6I | GTAC | 3 cut(s) | 100, 248, 333 |
| CviAII | CATG | 9 cut(s) | 95, 304, 313, 351, 365, 398, 487, 559, 785 |
| CviQI | GTAC | 3 cut(s) | 100, 248, 333 |
| DdeI | CTNAG | 8 cut(s) | 17, 389, 617, 636, 771, 930, 1143, 1218 |
| DpnI | GATC | 4 cut(s) | 39, 157, 294, 1119 |
| DpnII | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| Eam1104I | CTCTTC | 1 cut(s) | 909 |
| EarI | CTCTTC | 1 cut(s) | 909 |
| Eco130I | CCWWGG | 3 cut(s) | 207, 379, 850 |
| Eco31I | GGTCTC | 1 cut(s) | 625 |
| Eco47I | GGWCC | 2 cut(s) | 383, 796 |
| Eco57I | CTGAAG | 1 cut(s) | 723 |
| EcoRI | GAATTC | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 3 cut(s) | 207, 379, 850 |
| ErhI | CCWWGG | 3 cut(s) | 207, 379, 850 |
| FaeI | CATG | 9 cut(s) | 98, 307, 316, 354, 368, 401, 490, 562, 788 |
| FaqI | GGGAC | 1 cut(s) | 1147 |
| FatI | CATG | 9 cut(s) | 94, 303, 312, 350, 364, 397, 486, 558, 784 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 762, 900 |
| FokI | GGATG | 2 cut(s) | 591, 698 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 762, 900 |
| FspBI | CTAG | 4 cut(s) | 573, 660, 1047, 1231 |
| FspI | TGCGCA | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 83 |
| GluI | GCNGC | 3 cut(s) | 108, 762, 900 |
| GsaI | CCCAGC | 1 cut(s) | 1230 |
| HaeIII | GGCC | 1 cut(s) | 407 |
| HapII | CCGG | 3 cut(s) | 127, 413, 1206 |
| HgaI | GACGC | 2 cut(s) | 622, 1180 |
| HhaI | GCGC | 1 cut(s) | 84 |
| Hin1II | CATG | 9 cut(s) | 98, 307, 316, 354, 368, 401, 490, 562, 788 |
| Hin6I | GCGC | 1 cut(s) | 82 |
| HinP1I | GCGC | 1 cut(s) | 82 |
| HinfI | GANTC | 4 cut(s) | 115, 163, 562, 881 |
| HpaII | CCGG | 3 cut(s) | 127, 413, 1206 |
| HphI | GGTGA | 5 cut(s) | 44, 223, 287, 839, 1031 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 425, 833 |
| Hpy188I | TCNGA | 7 cut(s) | 145, 392, 609, 639, 672, 894, 931 |
| Hpy188III | TCNNGA | 3 cut(s) | 487, 595, 1100 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 425, 833 |
| Hpy99I | CGWCG | 1 cut(s) | 1174 |
| HpyAV | CCTTC | 3 cut(s) | 58, 310, 526 |
| HpyCH4III | ACNGT | 5 cut(s) | 463, 582, 911, 1007, 1130 |
| HpyCH4IV | ACGT | 2 cut(s) | 274, 427 |
| HpyCH4V | TGCA | 8 cut(s) | 110, 303, 312, 364, 397, 401, 539, 788 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 309, 413, 622, 698, 767, 824, 1043 |
| HpyF3I | CTNAG | 8 cut(s) | 17, 389, 617, 636, 771, 930, 1143, 1218 |
| HpySE526I | ACGT | 2 cut(s) | 274, 427 |
| Hsp92II | CATG | 9 cut(s) | 98, 307, 316, 354, 368, 401, 490, 562, 788 |
| HspAI | GCGC | 1 cut(s) | 82 |
| Kzo9I | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 748, 886 |
| LweI | GCATC | 2 cut(s) | 140, 1074 |
| MaeI | CTAG | 4 cut(s) | 573, 660, 1047, 1231 |
| MaeII | ACGT | 2 cut(s) | 274, 427 |
| MaeIII | GTNAC | 3 cut(s) | 164, 473, 1124 |
| MalI | GATC | 4 cut(s) | 39, 157, 294, 1119 |
| MboI | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| MboII | GAAGA | 7 cut(s) | 132, 250, 475, 599, 622, 716, 926 |
| MluCI | AATT | 8 cut(s) | 198, 283, 320, 418, 501, 525, 675, 922 |
| MlyI | GAGTC | 3 cut(s) | 124, 172, 875 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| MroXI | GAANNNNTTC | 1 cut(s) | 923 |
| MseI | TTAA | 5 cut(s) | 282, 345, 678, 801, 1188 |
| MspI | CCGG | 3 cut(s) | 127, 413, 1206 |
| MspR9I | CCNGG | 3 cut(s) | 128, 413, 1207 |
| Mva1269I | GAATGC | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 309, 413, 622, 698, 767, 824, 1043 |
| NciI | CCSGG | 3 cut(s) | 128, 413, 1207 |
| NdeII | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| NlaIII | CATG | 9 cut(s) | 98, 307, 316, 354, 368, 401, 490, 562, 788 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 377, 1204 |
| NmuCI | GTSAC | 2 cut(s) | 164, 473 |
| NsbI | TGCGCA | 1 cut(s) | 83 |
| NspI | RCATGY | 3 cut(s) | 307, 401, 788 |
| PaeI | GCATGC | 1 cut(s) | 401 |
| PagI | TCATGA | 1 cut(s) | 486 |
| PctI | GAATGC | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 923 |
| PfeI | GAWTC | 1 cut(s) | 562 |
| PkrI | GCNGC | 3 cut(s) | 109, 763, 901 |
| PleI | GAGTC | 3 cut(s) | 123, 171, 875 |
| PpsI | GAGTC | 3 cut(s) | 123, 171, 875 |
| Ppu21I | YACGTR | 1 cut(s) | 428 |
| PshBI | ATTAAT | 2 cut(s) | 678, 1188 |
| PspFI | CCCAGC | 1 cut(s) | 1226 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 377, 1204 |
| PspPI | GGNCC | 3 cut(s) | 383, 406, 796 |
| RsaI | GTAC | 3 cut(s) | 101, 249, 334 |
| RsaNI | GTAC | 3 cut(s) | 100, 248, 333 |
| SaqAI | TTAA | 5 cut(s) | 282, 345, 678, 801, 1188 |
| SatI | GCNGC | 3 cut(s) | 108, 762, 900 |
| Sau3AI | GATC | 4 cut(s) | 37, 155, 292, 1117 |
| Sau96I | GGNCC | 3 cut(s) | 383, 406, 796 |
| SchI | GAGTC | 3 cut(s) | 124, 172, 875 |
| ScrFI | CCNGG | 3 cut(s) | 128, 413, 1207 |
| SfaNI | GCATC | 2 cut(s) | 140, 1074 |
| SinI | GGWCC | 2 cut(s) | 383, 796 |
| SphI | GCATGC | 1 cut(s) | 401 |
| Sse9I | AATT | 8 cut(s) | 198, 283, 320, 418, 501, 525, 675, 922 |
| SsiI | CCGC | 2 cut(s) | 229, 1025 |
| SspI | AATATT | 2 cut(s) | 173, 1186 |
| SspMI | CTAG | 4 cut(s) | 573, 660, 1047, 1231 |
| StyD4I | CCNGG | 3 cut(s) | 126, 411, 1205 |
| StyI | CCWWGG | 3 cut(s) | 207, 379, 850 |
| TaaI | ACNGT | 5 cut(s) | 463, 582, 911, 1007, 1130 |
| TaiI | ACGT | 2 cut(s) | 277, 430 |
| TaqI | TCGA | 3 cut(s) | 697, 940, 994 |
| TaqII | GACCGA | 1 cut(s) | 784 |
| TasI | AATT | 8 cut(s) | 198, 283, 320, 418, 501, 525, 675, 922 |
| TatI | WGTACW | 1 cut(s) | 99 |
| TfiI | GAWTC | 1 cut(s) | 562 |
| Tru1I | TTAA | 5 cut(s) | 282, 345, 678, 801, 1188 |
| Tru9I | TTAA | 5 cut(s) | 282, 345, 678, 801, 1188 |
| TscAI | CASTG | 3 cut(s) | 91, 165, 916 |
| TseFI | GTSAC | 2 cut(s) | 164, 473 |
| TseI | GCWGC | 3 cut(s) | 107, 761, 899 |
| Tsp45I | GTSAC | 2 cut(s) | 164, 473 |
| TspDTI | ATGAA | 4 cut(s) | 329, 475, 569, 756 |
| TspGWI | ACGGA | 2 cut(s) | 524, 827 |
| TspRI | CASTG | 3 cut(s) | 91, 165, 916 |
| VpaK11BI | GGWCC | 2 cut(s) | 383, 796 |
| VspI | ATTAAT | 2 cut(s) | 678, 1188 |
| XapI | RAATTY | 2 cut(s) | 198, 922 |
| XceI | RCATGY | 3 cut(s) | 307, 401, 788 |
| XmnI | GAANNNNTTC | 1 cut(s) | 923 |
| XspI | CTAG | 4 cut(s) | 573, 660, 1047, 1231 |