ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 707 - 830 | 2.6e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2572 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2243 |
| AccI | GTMKAC | 1 cut(s) | 1816 |
| AccII | CGCG | 3 cut(s) | 632, 1703, 2060 |
| AccIII | TCCGGA | 2 cut(s) | 277, 763 |
| AciI | CCGC | 9 cut(s) | 110, 632, 651, 830, 1093, 1399, 1703, 1775, 1829 |
| AclWI | GGATC | 3 cut(s) | 42, 51, 2137 |
| AcoI | YGGCCR | 1 cut(s) | 648 |
| AcsI | RAATTY | 3 cut(s) | 1336, 1404, 1632 |
| AcuI | CTGAAG | 4 cut(s) | 648, 1275, 1668, 1745 |
| AcyI | GRCGYC | 1 cut(s) | 2160 |
| AfaI | GTAC | 9 cut(s) | 118, 189, 211, 313, 743, 1387, 1886, 2054, 2109 |
| AfeI | AGCGCT | 1 cut(s) | 1296 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 202, 613, 763, 1743, 2101, 2102, 2222, 2243 |
| AjiI | CACGTC | 1 cut(s) | 1786 |
| AjnI | CCWGG | 3 cut(s) | 672, 1418, 1544 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1134, 1166 |
| AleI | CACNNNNGTG | 1 cut(s) | 1166 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 401, 433 |
| Alw21I | GWGCWC | 2 cut(s) | 700, 1369 |
| Alw26I | GTCTC | 3 cut(s) | 171, 1004, 2177 |
| Alw44I | GTGCAC | 2 cut(s) | 696, 1365 |
| AlwI | GGATC | 3 cut(s) | 42, 51, 2137 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1768 |
| Ama87I | CYCGRG | 1 cut(s) | 757 |
| Aor13HI | TCCGGA | 2 cut(s) | 277, 763 |
| Aor51HI | AGCGCT | 1 cut(s) | 1296 |
| AoxI | GGCC | 4 cut(s) | 648, 853, 1488, 2415 |
| ApaLI | GTGCAC | 2 cut(s) | 696, 1365 |
| ApeKI | GCWGC | 5 cut(s) | 517, 1033, 1910, 2543, 2552 |
| ApoI | RAATTY | 3 cut(s) | 1336, 1404, 1632 |
| AseI | ATTAAT | 1 cut(s) | 2118 |
| AspA2I | CCTAGG | 1 cut(s) | 22 |
| AspLEI | GCGC | 1 cut(s) | 1297 |
| AspS9I | GGNCC | 5 cut(s) | 634, 761, 1135, 1488, 2287 |
| AsuC2I | CCSGG | 3 cut(s) | 758, 759, 1030 |
| AsuHPI | GGTGA | 1 cut(s) | 470 |
| AsuII | TTCGAA | 1 cut(s) | 1630 |
| AsuNHI | GCTAGC | 1 cut(s) | 1495 |
| AvaI | CYCGRG | 1 cut(s) | 757 |
| AvaII | GGWCC | 4 cut(s) | 634, 761, 1135, 2287 |
| AvrII | CCTAGG | 1 cut(s) | 22 |
| AxyI | CCTNAGG | 1 cut(s) | 1779 |
| BaeGI | GKGCMC | 2 cut(s) | 700, 1369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 303, 336 |
| BauI | CACGAG | 1 cut(s) | 1575 |
| BbsI | GAAGAC | 4 cut(s) | 1187, 1421, 1751, 1939 |
| Bbv12I | GWGCWC | 2 cut(s) | 700, 1369 |
| BbvI | GCAGC | 5 cut(s) | 504, 1045, 1897, 2530, 2564 |
| BccI | CCATC | 9 cut(s) | 168, 178, 200, 761, 928, 1120, 1853, 2278, 2341 |
| BceAI | ACGGC | 1 cut(s) | 1200 |
| BciT130I | CCWGG | 3 cut(s) | 674, 1420, 1546 |
| BciVI | GTATCC | 1 cut(s) | 261 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcnI | CCSGG | 3 cut(s) | 758, 759, 1030 |
| BcoDI | GTCTC | 3 cut(s) | 171, 1004, 2177 |
| BfaI | CTAG | 4 cut(s) | 23, 207, 1496, 2477 |
| BfmI | CTRYAG | 1 cut(s) | 2544 |
| BfoI | RGCGCY | 1 cut(s) | 1298 |
| BfuI | GTATCC | 1 cut(s) | 261 |
| BisI | GCNGC | 6 cut(s) | 518, 651, 1034, 1911, 2544, 2553 |
| BlnI | CCTAGG | 1 cut(s) | 22 |
| BlsI | GCNGC | 6 cut(s) | 519, 652, 1035, 1912, 2545, 2554 |
| BmcAI | AGTACT | 1 cut(s) | 1387 |
| Bme1390I | CCNGG | 6 cut(s) | 674, 758, 759, 1030, 1420, 1546 |
| Bme18I | GGWCC | 4 cut(s) | 634, 761, 1135, 2287 |
| BmeT110I | CYCGRG | 1 cut(s) | 757 |
| BmgBI | CACGTC | 1 cut(s) | 1786 |
| BmgT120I | GGNCC | 5 cut(s) | 634, 761, 1135, 1488, 2287 |
| BmiI | GGNNCC | 1 cut(s) | 762 |
| BmrFI | CCNGG | 6 cut(s) | 674, 758, 759, 1030, 1420, 1546 |
| BmrI | ACTGGG | 1 cut(s) | 1677 |
| BmsI | GCATC | 9 cut(s) | 233, 247, 283, 550, 762, 1110, 1236, 2311, 2341 |
| BmtI | GCTAGC | 1 cut(s) | 1499 |
| BmuI | ACTGGG | 1 cut(s) | 1677 |
| BpiI | GAAGAC | 4 cut(s) | 1187, 1421, 1751, 1939 |
| BpmI | CTGGAG | 3 cut(s) | 1607, 2208, 2220 |
| Bpu14I | TTCGAA | 1 cut(s) | 1630 |
| BpuMI | CCSGG | 3 cut(s) | 758, 759, 1030 |
| BsaAI | YACGTR | 1 cut(s) | 2177 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1482 |
| BsaHI | GRCGYC | 1 cut(s) | 2160 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 756, 757 |
| BsaWI | WCCGGW | 4 cut(s) | 277, 763, 1736, 2215 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 202, 613, 763, 1743, 2101, 2102, 2222, 2243 |
| Bse1I | ACTGG | 6 cut(s) | 856, 1195, 1324, 1415, 1672, 2191 |
| Bse21I | CCTNAGG | 1 cut(s) | 1779 |
| Bse3DI | GCAATG | 1 cut(s) | 2199 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1482 |
| BseAI | TCCGGA | 2 cut(s) | 277, 763 |
| BseBI | CCWGG | 3 cut(s) | 674, 1420, 1546 |
| BseDI | CCNNGG | 3 cut(s) | 22, 756, 757 |
| BseGI | GGATG | 9 cut(s) | 192, 274, 772, 777, 1125, 1753, 1864, 2326, 2356 |
| BseJI | GATNNNNATC | 1 cut(s) | 1482 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 202, 613, 763, 1743, 2101, 2102, 2222, 2243 |
| BseMI | GCAATG | 1 cut(s) | 2199 |
| BseMII | CTCAG | 4 cut(s) | 483, 1793, 1802, 2553 |
| BseNI | ACTGG | 6 cut(s) | 856, 1195, 1324, 1415, 1672, 2191 |
| BseRI | GAGGAG | 4 cut(s) | 425, 728, 1522, 2220 |
| BseSI | GKGCMC | 2 cut(s) | 700, 1369 |
| BseXI | GCAGC | 5 cut(s) | 504, 1045, 1897, 2530, 2564 |
| BseYI | CCCAGC | 2 cut(s) | 563, 1654 |
| Bsh1236I | CGCG | 3 cut(s) | 632, 1703, 2060 |
| Bsh1285I | CGRYCG | 3 cut(s) | 233, 1062, 2050 |
| BshFI | GGCC | 4 cut(s) | 650, 855, 1490, 2417 |
| BsiEI | CGRYCG | 3 cut(s) | 233, 1062, 2050 |
| BsiHKAI | GWGCWC | 2 cut(s) | 700, 1369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 757 |
| BsiSI | CCGG | 6 cut(s) | 278, 758, 764, 1029, 1737, 2216 |
| BslFI | GGGAC | 1 cut(s) | 340 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 202, 613, 763, 1743, 2101, 2102, 2222, 2243 |
| BsmAI | GTCTC | 3 cut(s) | 171, 1004, 2177 |
| BsmFI | GGGAC | 1 cut(s) | 340 |
| BsnI | GGCC | 4 cut(s) | 650, 855, 1490, 2417 |
| BsoBI | CYCGRG | 1 cut(s) | 757 |
| Bsp119I | TTCGAA | 1 cut(s) | 1630 |
| Bsp1286I | GDGCHC | 2 cut(s) | 700, 1369 |
| Bsp13I | TCCGGA | 2 cut(s) | 277, 763 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp143I | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| Bsp68I | TCGCGA | 1 cut(s) | 2060 |
| BspACI | CCGC | 9 cut(s) | 110, 632, 651, 830, 1093, 1399, 1703, 1775, 1829 |
| BspANI | GGCC | 4 cut(s) | 650, 855, 1490, 2417 |
| BspCNI | CTCAG | 4 cut(s) | 484, 1792, 1803, 2552 |
| BspEI | TCCGGA | 2 cut(s) | 277, 763 |
| BspFNI | CGCG | 3 cut(s) | 632, 1703, 2060 |
| BspLI | GGNNCC | 1 cut(s) | 762 |
| BspMAI | CTGCAG | 1 cut(s) | 2548 |
| BspOI | GCTAGC | 1 cut(s) | 1499 |
| BspPI | GGATC | 3 cut(s) | 42, 51, 2137 |
| BspT104I | TTCGAA | 1 cut(s) | 1630 |
| BsrDI | GCAATG | 1 cut(s) | 2199 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BsrI | ACTGG | 6 cut(s) | 856, 1195, 1324, 1415, 1672, 2191 |
| BssECI | CCNNGG | 3 cut(s) | 22, 756, 757 |
| BssMI | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| BssNI | GRCGYC | 1 cut(s) | 2160 |
| BssSI | CACGAG | 1 cut(s) | 1575 |
| BssT1I | CCWWGG | 1 cut(s) | 22 |
| Bst2BI | CACGAG | 1 cut(s) | 1575 |
| Bst2UI | CCWGG | 3 cut(s) | 674, 1420, 1546 |
| Bst4CI | ACNGT | 6 cut(s) | 432, 709, 2070, 2253, 2359, 2409 |
| Bst6I | CTCTTC | 3 cut(s) | 737, 1906, 1936 |
| BstACI | GRCGYC | 1 cut(s) | 2160 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2486 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstBAI | YACGTR | 1 cut(s) | 2177 |
| BstBI | TTCGAA | 1 cut(s) | 1630 |
| BstC8I | GCNNGC | 5 cut(s) | 1369, 1497, 1604, 2260, 2491 |
| BstDEI | CTNAG | 8 cut(s) | 435, 492, 1250, 1440, 1779, 1811, 2398, 2539 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 9 cut(s) | 192, 274, 772, 777, 1125, 1753, 1864, 2326, 2356 |
| BstFNI | CGCG | 3 cut(s) | 632, 1703, 2060 |
| BstH2I | RGCGCY | 1 cut(s) | 1298 |
| BstHHI | GCGC | 1 cut(s) | 1297 |
| BstKTI | GATC | 6 cut(s) | 37, 46, 184, 1929, 2050, 2132 |
| BstMAI | GTCTC | 3 cut(s) | 171, 1004, 2177 |
| BstMBI | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| BstMCI | CGRYCG | 3 cut(s) | 233, 1062, 2050 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 1496, 1505, 1700, 2198, 2207, 2486, 2549, 2552, 2558 |
| BstNI | CCWGG | 3 cut(s) | 674, 1420, 1546 |
| BstSCI | CCNGG | 6 cut(s) | 672, 756, 757, 1028, 1418, 1544 |
| BstSFI | CTRYAG | 1 cut(s) | 2544 |
| BstSLI | GKGCMC | 2 cut(s) | 700, 1369 |
| BstSNI | TACGTA | 1 cut(s) | 2177 |
| BstUI | CGCG | 3 cut(s) | 632, 1703, 2060 |
| BstV1I | GCAGC | 5 cut(s) | 504, 1045, 1897, 2530, 2564 |
| BstV2I | GAAGAC | 4 cut(s) | 1187, 1421, 1751, 1939 |
| BstX2I | RGATCY | 2 cut(s) | 34, 43 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1168 |
| BstYI | RGATCY | 2 cut(s) | 34, 43 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1779 |
| BsuI | GTATCC | 1 cut(s) | 261 |
| BsuRI | GGCC | 4 cut(s) | 650, 855, 1490, 2417 |
| BtgZI | GCGATG | 3 cut(s) | 227, 1325, 2297 |
| BtrI | CACGTC | 1 cut(s) | 1786 |
| BtsCI | GGATG | 9 cut(s) | 192, 274, 772, 777, 1125, 1753, 1864, 2326, 2356 |
| BtsI | GCAGTG | 2 cut(s) | 912, 2553 |
| BtsIMutI | CAGTG | 6 cut(s) | 672, 714, 912, 1408, 2430, 2553 |
| BtuMI | TCGCGA | 1 cut(s) | 2060 |
| Cac8I | GCNNGC | 5 cut(s) | 1369, 1497, 1604, 2260, 2491 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1768 |
| CfoI | GCGC | 1 cut(s) | 1297 |
| Cfr13I | GGNCC | 5 cut(s) | 634, 761, 1135, 1488, 2287 |
| Cfr9I | CCCGGG | 1 cut(s) | 757 |
| CseI | GACGC | 3 cut(s) | 638, 2149, 2327 |
| Csp6I | GTAC | 9 cut(s) | 117, 188, 210, 312, 742, 1386, 1885, 2053, 2108 |
| CviQI | GTAC | 9 cut(s) | 117, 188, 210, 312, 742, 1386, 1885, 2053, 2108 |
| DdeI | CTNAG | 8 cut(s) | 435, 492, 1250, 1440, 1779, 1811, 2398, 2539 |
| DpnI | GATC | 6 cut(s) | 36, 45, 183, 1928, 2049, 2131 |
| DpnII | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| EaeI | YGGCCR | 1 cut(s) | 648 |
| Eam1104I | CTCTTC | 3 cut(s) | 737, 1906, 1936 |
| EarI | CTCTTC | 3 cut(s) | 737, 1906, 1936 |
| EciI | GGCGGA | 1 cut(s) | 1764 |
| Eco105I | TACGTA | 1 cut(s) | 2177 |
| Eco130I | CCWWGG | 1 cut(s) | 22 |
| Eco147I | AGGCCT | 1 cut(s) | 2417 |
| Eco47I | GGWCC | 4 cut(s) | 634, 761, 1135, 2287 |
| Eco47III | AGCGCT | 1 cut(s) | 1296 |
| Eco57I | CTGAAG | 4 cut(s) | 648, 1275, 1668, 1745 |
| Eco81I | CCTNAGG | 1 cut(s) | 1779 |
| Eco88I | CYCGRG | 1 cut(s) | 757 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| EcoRII | CCWGG | 3 cut(s) | 672, 1418, 1544 |
| EcoT14I | CCWWGG | 1 cut(s) | 22 |
| EcoT22I | ATGCAT | 1 cut(s) | 363 |
| ErhI | CCWWGG | 1 cut(s) | 22 |
| FaqI | GGGAC | 1 cut(s) | 340 |
| FauI | CCCGC | 1 cut(s) | 1086 |
| FauNDI | CATATG | 2 cut(s) | 1306, 1998 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FblI | GTMKAC | 1 cut(s) | 1816 |
| Fnu4HI | GCNGC | 6 cut(s) | 518, 651, 1034, 1911, 2544, 2553 |
| FokI | GGATG | 9 cut(s) | 179, 261, 779, 784, 1132, 1760, 1871, 2333, 2363 |
| Fsp4HI | GCNGC | 6 cut(s) | 518, 651, 1034, 1911, 2544, 2553 |
| FspBI | CTAG | 4 cut(s) | 23, 207, 1496, 2477 |
| GlaI | GCGC | 1 cut(s) | 1296 |
| GluI | GCNGC | 6 cut(s) | 518, 651, 1034, 1911, 2544, 2553 |
| GsaI | CCCAGC | 2 cut(s) | 567, 1658 |
| GsuI | CTGGAG | 3 cut(s) | 1607, 2208, 2220 |
| HaeII | RGCGCY | 1 cut(s) | 1298 |
| HaeIII | GGCC | 4 cut(s) | 650, 855, 1490, 2417 |
| HapII | CCGG | 6 cut(s) | 278, 758, 764, 1029, 1737, 2216 |
| HgaI | GACGC | 3 cut(s) | 638, 2149, 2327 |
| HhaI | GCGC | 1 cut(s) | 1297 |
| Hin1I | GRCGYC | 1 cut(s) | 2160 |
| Hin6I | GCGC | 1 cut(s) | 1295 |
| HinP1I | GCGC | 1 cut(s) | 1295 |
| HincII | GTYRAC | 4 cut(s) | 553, 1042, 1329, 2066 |
| HindII | GTYRAC | 4 cut(s) | 553, 1042, 1329, 2066 |
| HindIII | AAGCTT | 3 cut(s) | 303, 609, 2559 |
| HinfI | GANTC | 5 cut(s) | 176, 328, 370, 413, 2062 |
| HpaI | GTTAAC | 1 cut(s) | 1042 |
| HpaII | CCGG | 6 cut(s) | 278, 758, 764, 1029, 1737, 2216 |
| HphI | GGTGA | 1 cut(s) | 470 |
| Hpy99I | CGWCG | 3 cut(s) | 1619, 2154, 2165 |
| HpyCH4III | ACNGT | 6 cut(s) | 432, 709, 2070, 2253, 2359, 2409 |
| HpyCH4IV | ACGT | 4 cut(s) | 318, 1190, 1785, 2176 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 1496, 1505, 1700, 2198, 2207, 2486, 2549, 2552, 2558 |
| HpyF3I | CTNAG | 8 cut(s) | 435, 492, 1250, 1440, 1779, 1811, 2398, 2539 |
| HpySE526I | ACGT | 4 cut(s) | 318, 1190, 1785, 2176 |
| Hsp92I | GRCGYC | 1 cut(s) | 2160 |
| HspAI | GCGC | 1 cut(s) | 1295 |
| Kpn2I | TCCGGA | 2 cut(s) | 277, 763 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 1042 |
| Kzo9I | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| LmnI | GCTCC | 3 cut(s) | 922, 2189, 2207 |
| Lsp1109I | GCAGC | 5 cut(s) | 504, 1045, 1897, 2530, 2564 |
| LweI | GCATC | 9 cut(s) | 233, 247, 283, 550, 762, 1110, 1236, 2311, 2341 |
| MaeI | CTAG | 4 cut(s) | 23, 207, 1496, 2477 |
| MaeII | ACGT | 4 cut(s) | 318, 1190, 1785, 2176 |
| MaeIII | GTNAC | 8 cut(s) | 439, 458, 580, 858, 1718, 2143, 2359, 2456 |
| MalI | GATC | 6 cut(s) | 36, 45, 183, 1928, 2049, 2131 |
| MboI | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| MfeI | CAATTG | 2 cut(s) | 92, 2342 |
| MflI | RGATCY | 2 cut(s) | 34, 43 |
| MhlI | GDGCHC | 2 cut(s) | 700, 1369 |
| MlyI | GAGTC | 4 cut(s) | 170, 322, 422, 2071 |
| MmeI | TCCRAC | 5 cut(s) | 21, 81, 814, 1154, 2391 |
| Mph1103I | ATGCAT | 1 cut(s) | 363 |
| MroI | TCCGGA | 2 cut(s) | 277, 763 |
| MseI | TTAA | 6 cut(s) | 873, 1041, 1482, 1538, 1971, 2118 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1166 |
| MspA1I | CMGCKG | 2 cut(s) | 2543, 2555 |
| MspI | CCGG | 6 cut(s) | 278, 758, 764, 1029, 1737, 2216 |
| MspR9I | CCNGG | 6 cut(s) | 674, 758, 759, 1030, 1420, 1546 |
| MunI | CAATTG | 2 cut(s) | 92, 2342 |
| MvaI | CCWGG | 3 cut(s) | 674, 1420, 1546 |
| MvnI | CGCG | 3 cut(s) | 632, 1703, 2060 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 1496, 1505, 1700, 2198, 2207, 2486, 2549, 2552, 2558 |
| NciI | CCSGG | 3 cut(s) | 758, 759, 1030 |
| NdeI | CATATG | 2 cut(s) | 1306, 1998 |
| NdeII | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| NheI | GCTAGC | 1 cut(s) | 1495 |
| NlaIV | GGNNCC | 1 cut(s) | 762 |
| NmuCI | GTSAC | 3 cut(s) | 458, 1718, 2143 |
| NruI | TCGCGA | 1 cut(s) | 2060 |
| NsiI | ATGCAT | 1 cut(s) | 363 |
| NspV | TTCGAA | 1 cut(s) | 1630 |
| OliI | CACNNNNGTG | 1 cut(s) | 1166 |
| PceI | AGGCCT | 1 cut(s) | 2417 |
| PfeI | GAWTC | 1 cut(s) | 370 |
| PflFI | GACNNNGTC | 1 cut(s) | 632 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2243 |
| PkrI | GCNGC | 6 cut(s) | 519, 652, 1035, 1912, 2545, 2554 |
| Ple19I | CGATCG | 1 cut(s) | 2050 |
| PleI | GAGTC | 4 cut(s) | 170, 322, 421, 2070 |
| PpsI | GAGTC | 4 cut(s) | 170, 322, 421, 2070 |
| Ppu21I | YACGTR | 1 cut(s) | 2177 |
| PshBI | ATTAAT | 1 cut(s) | 2118 |
| PsiI | TTATAA | 1 cut(s) | 2572 |
| Psp6I | CCWGG | 3 cut(s) | 672, 1418, 1544 |
| PspFI | CCCAGC | 2 cut(s) | 563, 1654 |
| PspGI | CCWGG | 3 cut(s) | 672, 1418, 1544 |
| PspN4I | GGNNCC | 1 cut(s) | 762 |
| PspPI | GGNCC | 5 cut(s) | 634, 761, 1135, 1488, 2287 |
| PstI | CTGCAG | 1 cut(s) | 2548 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1768 |
| PsuI | RGATCY | 2 cut(s) | 34, 43 |
| PsyI | GACNNNGTC | 1 cut(s) | 632 |
| PvuI | CGATCG | 1 cut(s) | 2050 |
| PvuII | CAGCTG | 2 cut(s) | 2543, 2555 |
| RruI | TCGCGA | 1 cut(s) | 2060 |
| RsaI | GTAC | 9 cut(s) | 118, 189, 211, 313, 743, 1387, 1886, 2054, 2109 |
| RsaNI | GTAC | 9 cut(s) | 117, 188, 210, 312, 742, 1386, 1885, 2053, 2108 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1166 |
| SaqAI | TTAA | 6 cut(s) | 873, 1041, 1482, 1538, 1971, 2118 |
| SatI | GCNGC | 6 cut(s) | 518, 651, 1034, 1911, 2544, 2553 |
| Sau3AI | GATC | 6 cut(s) | 34, 43, 181, 1926, 2047, 2129 |
| Sau96I | GGNCC | 5 cut(s) | 634, 761, 1135, 1488, 2287 |
| ScaI | AGTACT | 1 cut(s) | 1387 |
| SchI | GAGTC | 4 cut(s) | 170, 322, 422, 2071 |
| ScrFI | CCNGG | 6 cut(s) | 674, 758, 759, 1030, 1420, 1546 |
| SduI | GDGCHC | 2 cut(s) | 700, 1369 |
| SfaNI | GCATC | 9 cut(s) | 233, 247, 283, 550, 762, 1110, 1236, 2311, 2341 |
| SfcI | CTRYAG | 1 cut(s) | 2544 |
| SfuI | TTCGAA | 1 cut(s) | 1630 |
| SinI | GGWCC | 4 cut(s) | 634, 761, 1135, 2287 |
| SmaI | CCCGGG | 1 cut(s) | 759 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1166 |
| SnaBI | TACGTA | 1 cut(s) | 2177 |
| SseBI | AGGCCT | 1 cut(s) | 2417 |
| SsiI | CCGC | 9 cut(s) | 110, 632, 651, 830, 1093, 1399, 1703, 1775, 1829 |
| SspI | AATATT | 1 cut(s) | 396 |
| SspMI | CTAG | 4 cut(s) | 23, 207, 1496, 2477 |
| StuI | AGGCCT | 1 cut(s) | 2417 |
| StyD4I | CCNGG | 6 cut(s) | 672, 756, 757, 1028, 1418, 1544 |
| StyI | CCWWGG | 1 cut(s) | 22 |
| TaaI | ACNGT | 6 cut(s) | 432, 709, 2070, 2253, 2359, 2409 |
| TaiI | ACGT | 4 cut(s) | 321, 1193, 1788, 2179 |
| TaqI | TCGA | 5 cut(s) | 229, 658, 1630, 2028, 2046 |
| TaqII | GACCGA | 2 cut(s) | 247, 1048 |
| TatI | WGTACW | 4 cut(s) | 116, 209, 1385, 2107 |
| TauI | GCSGC | 1 cut(s) | 653 |
| TfiI | GAWTC | 1 cut(s) | 370 |
| Tru1I | TTAA | 6 cut(s) | 873, 1041, 1482, 1538, 1971, 2118 |
| Tru9I | TTAA | 6 cut(s) | 873, 1041, 1482, 1538, 1971, 2118 |
| TscAI | CASTG | 6 cut(s) | 672, 714, 919, 1415, 2430, 2553 |
| TseFI | GTSAC | 3 cut(s) | 458, 1718, 2143 |
| TseI | GCWGC | 5 cut(s) | 517, 1033, 1910, 2543, 2552 |
| Tsp45I | GTSAC | 3 cut(s) | 458, 1718, 2143 |
| TspDTI | ATGAA | 6 cut(s) | 44, 470, 695, 1005, 1155, 1985 |
| TspGWI | ACGGA | 5 cut(s) | 329, 1632, 1861, 2142, 2333 |
| TspMI | CCCGGG | 1 cut(s) | 757 |
| TspRI | CASTG | 6 cut(s) | 672, 714, 919, 1415, 2430, 2553 |
| Tth111I | GACNNNGTC | 1 cut(s) | 632 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2243 |
| VneI | GTGCAC | 2 cut(s) | 696, 1365 |
| VpaK11BI | GGWCC | 4 cut(s) | 634, 761, 1135, 2287 |
| VspI | ATTAAT | 1 cut(s) | 2118 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XapI | RAATTY | 3 cut(s) | 1336, 1404, 1632 |
| XmaI | CCCGGG | 1 cut(s) | 757 |
| XmaJI | CCTAGG | 1 cut(s) | 22 |
| XmiI | GTMKAC | 1 cut(s) | 1816 |
| XspI | CTAG | 4 cut(s) | 23, 207, 1496, 2477 |
| ZrmI | AGTACT | 1 cut(s) | 1387 |
| Zsp2I | ATGCAT | 1 cut(s) | 363 |