Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR3_1st | PF25173 | 587 - 728 | 5.9e-13 | WDR3 first beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 594 - 720 | 1.6e-15 | WDR5 beta-propeller domain |
| WDR55 | PF24796 | 594 - 719 | 6.6e-07 | WDR55 |
| Beta-prop_THOC3 | PF25174 | 597 - 721 | 1.9e-11 | THOC3 beta-propeller domain |
| WD40_CDC20-Fz | PF24807 | 643 - 719 | 1e-08 | CDC20/Fizzy WD40 domain |
| WD40_WDHD1_1st | PF24817 | 656 - 718 | 9.6e-06 | WDHD1 first WD40 domain |
| WD40_Prp19 | PF24814 | 661 - 718 | 3e-08 | Prp19 WD40 domain |
| Beta-prop_WDR36-Utp21_1st | PF25171 | 662 - 719 | 6.3e-06 | WDR36/Utp21 first beta-propeller |
| WD40 | PF00400 | 678 - 715 | 1.4e-07 | WD domain, G-beta repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1996 |
| Acc36I | ACCTGC | 1 cut(s) | 1996 |
| Acc65I | GGTACC | 1 cut(s) | 271 |
| AccB1I | GGYRCC | 1 cut(s) | 271 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 303 |
| AccI | GTMKAC | 2 cut(s) | 809, 1672 |
| AciI | CCGC | 6 cut(s) | 442, 962, 1204, 1748, 2112, 2292 |
| AclWI | GGATC | 4 cut(s) | 351, 1362, 1375, 1896 |
| AcoI | YGGCCR | 2 cut(s) | 980, 2106 |
| AcsI | RAATTY | 5 cut(s) | 613, 1064, 1154, 1774, 1820 |
| AcuI | CTGAAG | 2 cut(s) | 837, 840 |
| AcyI | GRCGYC | 1 cut(s) | 1392 |
| AdeI | CACNNNGTG | 1 cut(s) | 2176 |
| AfaI | GTAC | 4 cut(s) | 273, 2034, 2216, 2248 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 303, 533, 534, 553, 735, 1043, 1294, 1377 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1391 |
| AhlI | ACTAGT | 1 cut(s) | 812 |
| AjnI | CCWGG | 3 cut(s) | 237, 552, 1387 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 976, 1008 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 414, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 745 |
| Alw26I | GTCTC | 4 cut(s) | 115, 484, 754, 937 |
| AlwI | GGATC | 4 cut(s) | 351, 1362, 1375, 1896 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 512, 1451 |
| Ama87I | CYCGRG | 1 cut(s) | 527 |
| AoxI | GGCC | 7 cut(s) | 294, 443, 980, 1034, 1541, 2106, 2230 |
| ApeKI | GCWGC | 4 cut(s) | 24, 686, 1106, 1190 |
| ApoI | RAATTY | 5 cut(s) | 613, 1064, 1154, 1774, 1820 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 632, 664 |
| AseI | ATTAAT | 1 cut(s) | 701 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1467, 1695 |
| Asp718I | GGTACC | 1 cut(s) | 271 |
| AspA2I | CCTAGG | 1 cut(s) | 229 |
| AspS9I | GGNCC | 3 cut(s) | 294, 836, 2070 |
| AsuHPI | GGTGA | 1 cut(s) | 1058 |
| AvaI | CYCGRG | 1 cut(s) | 527 |
| AvaII | GGWCC | 2 cut(s) | 836, 2070 |
| AvrII | CCTAGG | 1 cut(s) | 229 |
| BalI | TGGCCA | 2 cut(s) | 982, 2108 |
| BamHI | GGATCC | 1 cut(s) | 1367 |
| BanI | GGYRCC | 1 cut(s) | 271 |
| BauI | CACGAG | 1 cut(s) | 690 |
| Bbv12I | GWGCWC | 1 cut(s) | 745 |
| BbvI | GCAGC | 4 cut(s) | 11, 698, 1118, 1202 |
| BccI | CCATC | 8 cut(s) | 194, 527, 972, 1336, 1427, 1589, 1808, 2117 |
| BciT130I | CCWGG | 3 cut(s) | 239, 554, 1389 |
| BcoDI | GTCTC | 4 cut(s) | 115, 484, 754, 937 |
| BcuI | ACTAGT | 1 cut(s) | 812 |
| BfmI | CTRYAG | 3 cut(s) | 28, 1055, 1830 |
| BfuAI | ACCTGC | 1 cut(s) | 1996 |
| BglII | AGATCT | 1 cut(s) | 1765 |
| BisI | GCNGC | 5 cut(s) | 25, 443, 687, 1107, 1191 |
| BlnI | CCTAGG | 1 cut(s) | 229 |
| BlpI | GCTNAGC | 1 cut(s) | 1937 |
| BlsI | GCNGC | 5 cut(s) | 26, 444, 688, 1108, 1192 |
| BmcAI | AGTACT | 1 cut(s) | 2034 |
| Bme1390I | CCNGG | 3 cut(s) | 239, 554, 1389 |
| Bme18I | GGWCC | 2 cut(s) | 836, 2070 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1391 |
| BmeT110I | CYCGRG | 1 cut(s) | 527 |
| BmgT120I | GGNCC | 3 cut(s) | 294, 836, 2070 |
| BmiI | GGNNCC | 2 cut(s) | 273, 1369 |
| BmrFI | CCNGG | 3 cut(s) | 239, 554, 1389 |
| BmsI | GCATC | 3 cut(s) | 346, 506, 592 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 727, 759 |
| BpmI | CTGGAG | 1 cut(s) | 618 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1020 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1937 |
| BpuEI | CTTGAG | 3 cut(s) | 340, 892, 1721 |
| Bsa29I | ATCGAT | 2 cut(s) | 346, 865 |
| BsaHI | GRCGYC | 1 cut(s) | 1392 |
| BsaJI | CCNNGG | 6 cut(s) | 125, 229, 238, 528, 552, 1266 |
| BsaWI | WCCGGW | 2 cut(s) | 117, 340 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 508, 538, 1127, 1157 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 303, 533, 534, 553, 735, 1043, 1294, 1377 |
| Bse1I | ACTGG | 1 cut(s) | 275 |
| Bse3DI | GCAATG | 1 cut(s) | 332 |
| BseBI | CCWGG | 3 cut(s) | 239, 554, 1389 |
| BseCI | ATCGAT | 2 cut(s) | 346, 865 |
| BseDI | CCNNGG | 6 cut(s) | 125, 229, 238, 528, 552, 1266 |
| BseGI | GGATG | 6 cut(s) | 271, 538, 1438, 1819, 2020, 2185 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 303, 533, 534, 553, 735, 1043, 1294, 1377 |
| BseMI | GCAATG | 1 cut(s) | 332 |
| BseMII | CTCAG | 6 cut(s) | 48, 519, 932, 965, 1011, 1569 |
| BseNI | ACTGG | 1 cut(s) | 275 |
| BseRI | GAGGAG | 3 cut(s) | 751, 1148, 1427 |
| BseXI | GCAGC | 4 cut(s) | 11, 698, 1118, 1202 |
| BsgI | GTGCAG | 2 cut(s) | 998, 2024 |
| BshFI | GGCC | 7 cut(s) | 296, 445, 982, 1036, 1543, 2108, 2232 |
| BshNI | GGYRCC | 1 cut(s) | 271 |
| BshVI | ATCGAT | 2 cut(s) | 346, 865 |
| BsiHKAI | GWGCWC | 1 cut(s) | 745 |
| BsiHKCI | CYCGRG | 1 cut(s) | 527 |
| BsiSI | CCGG | 2 cut(s) | 118, 341 |
| BslFI | GGGAC | 1 cut(s) | 828 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 303, 533, 534, 553, 735, 1043, 1294, 1377 |
| BsmAI | GTCTC | 4 cut(s) | 115, 484, 754, 937 |
| BsmFI | GGGAC | 1 cut(s) | 828 |
| BsmI | GAATGC | 2 cut(s) | 371, 2280 |
| BsnI | GGCC | 7 cut(s) | 296, 445, 982, 1036, 1543, 2108, 2232 |
| BsoBI | CYCGRG | 1 cut(s) | 527 |
| Bsp1286I | GDGCHC | 1 cut(s) | 745 |
| Bsp1407I | TGTACA | 1 cut(s) | 2246 |
| Bsp143I | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1937 |
| BspACI | CCGC | 6 cut(s) | 442, 962, 1204, 1748, 2112, 2292 |
| BspANI | GGCC | 7 cut(s) | 296, 445, 982, 1036, 1543, 2108, 2232 |
| BspCNI | CTCAG | 6 cut(s) | 49, 518, 933, 966, 1012, 1568 |
| BspDI | ATCGAT | 2 cut(s) | 346, 865 |
| BspLI | GGNNCC | 2 cut(s) | 273, 1369 |
| BspMI | ACCTGC | 1 cut(s) | 1996 |
| BspPI | GGATC | 4 cut(s) | 351, 1362, 1375, 1896 |
| BspT107I | GGYRCC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 332 |
| BsrGI | TGTACA | 1 cut(s) | 2246 |
| BsrI | ACTGG | 1 cut(s) | 275 |
| BssECI | CCNNGG | 6 cut(s) | 125, 229, 238, 528, 552, 1266 |
| BssMI | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| BssNAI | GTATAC | 1 cut(s) | 810 |
| BssNI | GRCGYC | 1 cut(s) | 1392 |
| BssSI | CACGAG | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 3 cut(s) | 125, 229, 1266 |
| Bst1107I | GTATAC | 1 cut(s) | 810 |
| Bst2BI | CACGAG | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 3 cut(s) | 239, 554, 1389 |
| Bst4CI | ACNGT | 4 cut(s) | 1213, 1380, 1958, 2251 |
| Bst6I | CTCTTC | 1 cut(s) | 816 |
| BstACI | GRCGYC | 1 cut(s) | 1392 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 970 |
| BstAUI | TGTACA | 1 cut(s) | 2246 |
| BstC8I | GCNNGC | 5 cut(s) | 371, 665, 1761, 2106, 2110 |
| BstF5I | GGATG | 6 cut(s) | 271, 538, 1438, 1819, 2020, 2185 |
| BstKTI | GATC | 9 cut(s) | 346, 350, 1309, 1370, 1768, 1810, 1891, 1931, 2297 |
| BstMAI | GTCTC | 4 cut(s) | 115, 484, 754, 937 |
| BstMBI | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 903, 970, 979, 1021, 1549 |
| BstNI | CCWGG | 3 cut(s) | 239, 554, 1389 |
| BstNSI | RCATGY | 2 cut(s) | 377, 667 |
| BstSCI | CCNGG | 3 cut(s) | 237, 552, 1387 |
| BstSFI | CTRYAG | 3 cut(s) | 28, 1055, 1830 |
| BstV1I | GCAGC | 4 cut(s) | 11, 698, 1118, 1202 |
| BstX2I | RGATCY | 2 cut(s) | 1367, 1765 |
| BstYI | RGATCY | 2 cut(s) | 1367, 1765 |
| BstZ17I | GTATAC | 1 cut(s) | 810 |
| Bsu15I | ATCGAT | 2 cut(s) | 346, 865 |
| BsuRI | GGCC | 7 cut(s) | 296, 445, 982, 1036, 1543, 2108, 2232 |
| BsuTUI | ATCGAT | 2 cut(s) | 346, 865 |
| BtgZI | GCGATG | 1 cut(s) | 153 |
| BtsCI | GGATG | 6 cut(s) | 271, 538, 1438, 1819, 2020, 2185 |
| BtsIMutI | CAGTG | 2 cut(s) | 219, 516 |
| BveI | ACCTGC | 1 cut(s) | 1996 |
| Cac8I | GCNNGC | 5 cut(s) | 371, 665, 1761, 2106, 2110 |
| CaiI | CAGNNNCTG | 2 cut(s) | 512, 1451 |
| Cfr13I | GGNCC | 3 cut(s) | 294, 836, 2070 |
| ClaI | ATCGAT | 2 cut(s) | 346, 865 |
| CseI | GACGC | 1 cut(s) | 1381 |
| Csp6I | GTAC | 4 cut(s) | 272, 2033, 2215, 2247 |
| CviAII | CATG | 7 cut(s) | 21, 374, 476, 664, 793, 1284, 2054 |
| CviQI | GTAC | 4 cut(s) | 272, 2033, 2215, 2247 |
| DpnI | GATC | 9 cut(s) | 345, 349, 1308, 1369, 1767, 1809, 1890, 1930, 2296 |
| DpnII | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| DraI | TTTAAA | 1 cut(s) | 1504 |
| DraIII | CACNNNGTG | 1 cut(s) | 2176 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1391 |
| EaeI | YGGCCR | 2 cut(s) | 980, 2106 |
| Eam1104I | CTCTTC | 1 cut(s) | 816 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1391 |
| EarI | CTCTTC | 1 cut(s) | 816 |
| EciI | GGCGGA | 1 cut(s) | 1763 |
| Eco130I | CCWWGG | 3 cut(s) | 125, 229, 1266 |
| Eco32I | GATATC | 1 cut(s) | 1897 |
| Eco47I | GGWCC | 2 cut(s) | 836, 2070 |
| Eco57I | CTGAAG | 2 cut(s) | 837, 840 |
| Eco88I | CYCGRG | 1 cut(s) | 527 |
| EcoRI | GAATTC | 1 cut(s) | 1774 |
| EcoRII | CCWGG | 3 cut(s) | 237, 552, 1387 |
| EcoRV | GATATC | 1 cut(s) | 1897 |
| EcoT14I | CCWWGG | 3 cut(s) | 125, 229, 1266 |
| EcoT22I | ATGCAT | 1 cut(s) | 361 |
| ErhI | CCWWGG | 3 cut(s) | 125, 229, 1266 |
| FaeI | CATG | 7 cut(s) | 24, 377, 479, 667, 796, 1287, 2057 |
| FaqI | GGGAC | 1 cut(s) | 828 |
| FatI | CATG | 7 cut(s) | 20, 373, 475, 663, 792, 1283, 2053 |
| FauI | CCCGC | 1 cut(s) | 2105 |
| FblI | GTMKAC | 2 cut(s) | 809, 1672 |
| Fnu4HI | GCNGC | 5 cut(s) | 25, 443, 687, 1107, 1191 |
| FokI | GGATG | 6 cut(s) | 278, 545, 1445, 1826, 2027, 2192 |
| Fsp4HI | GCNGC | 5 cut(s) | 25, 443, 687, 1107, 1191 |
| GluI | GCNGC | 5 cut(s) | 25, 443, 687, 1107, 1191 |
| GsuI | CTGGAG | 1 cut(s) | 618 |
| HaeIII | GGCC | 7 cut(s) | 296, 445, 982, 1036, 1543, 2108, 2232 |
| HapII | CCGG | 2 cut(s) | 118, 341 |
| HgaI | GACGC | 1 cut(s) | 1381 |
| Hin1I | GRCGYC | 1 cut(s) | 1392 |
| Hin1II | CATG | 7 cut(s) | 24, 377, 479, 667, 796, 1287, 2057 |
| HindIII | AAGCTT | 1 cut(s) | 990 |
| HpaII | CCGG | 2 cut(s) | 118, 341 |
| HphI | GGTGA | 1 cut(s) | 1058 |
| Hpy166II | GTNNAC | 3 cut(s) | 810, 1673, 2247 |
| Hpy8I | GTNNAC | 3 cut(s) | 810, 1673, 2247 |
| HpyAV | CCTTC | 7 cut(s) | 27, 41, 413, 456, 1661, 1738, 1988 |
| HpyCH4III | ACNGT | 4 cut(s) | 1213, 1380, 1958, 2251 |
| HpyCH4IV | ACGT | 1 cut(s) | 1099 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 903, 970, 979, 1021, 1549 |
| HpySE526I | ACGT | 1 cut(s) | 1099 |
| Hsp92I | GRCGYC | 1 cut(s) | 1392 |
| Hsp92II | CATG | 7 cut(s) | 24, 377, 479, 667, 796, 1287, 2057 |
| KpnI | GGTACC | 1 cut(s) | 275 |
| Kzo9I | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| LmnI | GCTCC | 2 cut(s) | 637, 1135 |
| Lsp1109I | GCAGC | 4 cut(s) | 11, 698, 1118, 1202 |
| LweI | GCATC | 3 cut(s) | 346, 506, 592 |
| MaeII | ACGT | 1 cut(s) | 1099 |
| MaeIII | GTNAC | 3 cut(s) | 1868, 1985, 2017 |
| MalI | GATC | 9 cut(s) | 345, 349, 1308, 1369, 1767, 1809, 1890, 1930, 2296 |
| MboI | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| MfeI | CAATTG | 1 cut(s) | 802 |
| MflI | RGATCY | 2 cut(s) | 1367, 1765 |
| MhlI | GDGCHC | 1 cut(s) | 745 |
| MlsI | TGGCCA | 2 cut(s) | 982, 2108 |
| MluNI | TGGCCA | 2 cut(s) | 982, 2108 |
| MlyI | GAGTC | 5 cut(s) | 68, 117, 500, 1523, 1865 |
| MmeI | TCCRAC | 3 cut(s) | 312, 1664, 1931 |
| Mox20I | TGGCCA | 2 cut(s) | 982, 2108 |
| Mph1103I | ATGCAT | 1 cut(s) | 361 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1467, 1695 |
| MscI | TGGCCA | 2 cut(s) | 982, 2108 |
| MslI | CAYNNNNRTG | 3 cut(s) | 222, 364, 1222 |
| Msp20I | TGGCCA | 2 cut(s) | 982, 2108 |
| MspA1I | CMGCKG | 4 cut(s) | 1193, 1835, 2112, 2292 |
| MspI | CCGG | 2 cut(s) | 118, 341 |
| MspR9I | CCNGG | 3 cut(s) | 239, 554, 1389 |
| MunI | CAATTG | 1 cut(s) | 802 |
| Mva1269I | GAATGC | 2 cut(s) | 371, 2280 |
| MvaI | CCWGG | 3 cut(s) | 239, 554, 1389 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 903, 970, 979, 1021, 1549 |
| NdeII | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| NlaIII | CATG | 7 cut(s) | 24, 377, 479, 667, 796, 1287, 2057 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 1369 |
| NmuCI | GTSAC | 1 cut(s) | 1868 |
| NsiI | ATGCAT | 1 cut(s) | 361 |
| NspI | RCATGY | 2 cut(s) | 377, 667 |
| PaeI | GCATGC | 1 cut(s) | 667 |
| PaqCI | CACCTGC | 1 cut(s) | 1996 |
| PctI | GAATGC | 2 cut(s) | 371, 2280 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1467, 1695 |
| PfeI | GAWTC | 9 cut(s) | 121, 147, 176, 509, 521, 557, 695, 1355, 2262 |
| PflFI | GACNNNGTC | 1 cut(s) | 931 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 303 |
| PkrI | GCNGC | 5 cut(s) | 26, 444, 688, 1108, 1192 |
| PleI | GAGTC | 5 cut(s) | 67, 116, 499, 1522, 1865 |
| PpsI | GAGTC | 5 cut(s) | 67, 116, 499, 1522, 1865 |
| PshBI | ATTAAT | 1 cut(s) | 701 |
| Psp6I | CCWGG | 3 cut(s) | 237, 552, 1387 |
| PspGI | CCWGG | 3 cut(s) | 237, 552, 1387 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 1369 |
| PspPI | GGNCC | 3 cut(s) | 294, 836, 2070 |
| PstNI | CAGNNNCTG | 2 cut(s) | 512, 1451 |
| PsuI | RGATCY | 2 cut(s) | 1367, 1765 |
| PsyI | GACNNNGTC | 1 cut(s) | 931 |
| PvuII | CAGCTG | 2 cut(s) | 1193, 1835 |
| RsaI | GTAC | 4 cut(s) | 273, 2034, 2216, 2248 |
| RsaNI | GTAC | 4 cut(s) | 272, 2033, 2215, 2247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 222, 364, 1222 |
| SatI | GCNGC | 5 cut(s) | 25, 443, 687, 1107, 1191 |
| Sau3AI | GATC | 9 cut(s) | 343, 347, 1306, 1367, 1765, 1807, 1888, 1928, 2294 |
| Sau96I | GGNCC | 3 cut(s) | 294, 836, 2070 |
| ScaI | AGTACT | 1 cut(s) | 2034 |
| SchI | GAGTC | 5 cut(s) | 68, 117, 500, 1523, 1865 |
| ScrFI | CCNGG | 3 cut(s) | 239, 554, 1389 |
| SduI | GDGCHC | 1 cut(s) | 745 |
| SfaNI | GCATC | 3 cut(s) | 346, 506, 592 |
| SfcI | CTRYAG | 3 cut(s) | 28, 1055, 1830 |
| SinI | GGWCC | 2 cut(s) | 836, 2070 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 222, 364, 1222 |
| SmlI | CTYRAG | 3 cut(s) | 319, 907, 1700 |
| SmoI | CTYRAG | 3 cut(s) | 319, 907, 1700 |
| SpeI | ACTAGT | 1 cut(s) | 812 |
| SphI | GCATGC | 1 cut(s) | 667 |
| SsiI | CCGC | 6 cut(s) | 442, 962, 1204, 1748, 2112, 2292 |
| SspI | AATATT | 2 cut(s) | 786, 1860 |
| StyD4I | CCNGG | 3 cut(s) | 237, 552, 1387 |
| StyI | CCWWGG | 3 cut(s) | 125, 229, 1266 |
| TaaI | ACNGT | 4 cut(s) | 1213, 1380, 1958, 2251 |
| TaiI | ACGT | 1 cut(s) | 1102 |
| TaqI | TCGA | 5 cut(s) | 346, 489, 560, 865, 949 |
| TatI | WGTACW | 2 cut(s) | 2032, 2246 |
| TauI | GCSGC | 1 cut(s) | 445 |
| TfiI | GAWTC | 9 cut(s) | 121, 147, 176, 509, 521, 557, 695, 1355, 2262 |
| TscAI | CASTG | 2 cut(s) | 226, 523 |
| TseFI | GTSAC | 1 cut(s) | 1868 |
| TseI | GCWGC | 4 cut(s) | 24, 686, 1106, 1190 |
| Tsp45I | GTSAC | 1 cut(s) | 1868 |
| TspGWI | ACGGA | 1 cut(s) | 2215 |
| TspRI | CASTG | 2 cut(s) | 226, 523 |
| Tth111I | GACNNNGTC | 1 cut(s) | 931 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 303 |
| VpaK11BI | GGWCC | 2 cut(s) | 836, 2070 |
| VspI | ATTAAT | 1 cut(s) | 701 |
| XapI | RAATTY | 5 cut(s) | 613, 1064, 1154, 1774, 1820 |
| XbaI | TCTAGA | 2 cut(s) | 86, 140 |
| XceI | RCATGY | 2 cut(s) | 377, 667 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1403 |
| XmaJI | CCTAGG | 1 cut(s) | 229 |
| XmiI | GTMKAC | 2 cut(s) | 809, 1672 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1467, 1695 |
| ZrmI | AGTACT | 1 cut(s) | 2034 |
| Zsp2I | ATGCAT | 1 cut(s) | 361 |