Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 90, 284 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 350 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 276 |
| AluBI | AGCT | 7 cut(s) | 59, 107, 129, 323, 368, 398, 431 |
| AluI | AGCT | 7 cut(s) | 59, 107, 129, 323, 368, 398, 431 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| Alw26I | GTCTC | 1 cut(s) | 284 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 371 |
| Ama87I | CYCGRG | 1 cut(s) | 68 |
| AoxI | GGCC | 3 cut(s) | 72, 91, 238 |
| ApeKI | GCWGC | 3 cut(s) | 53, 56, 368 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 1 cut(s) | 239 |
| AvaI | CYCGRG | 1 cut(s) | 68 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BbvI | GCAGC | 3 cut(s) | 40, 68, 355 |
| BciVI | GTATCC | 1 cut(s) | 106 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BcoDI | GTCTC | 1 cut(s) | 284 |
| BfaI | CTAG | 2 cut(s) | 122, 411 |
| BfmI | CTRYAG | 1 cut(s) | 54 |
| BfuI | GTATCC | 1 cut(s) | 106 |
| BisI | GCNGC | 4 cut(s) | 54, 57, 91, 369 |
| BlsI | GCNGC | 4 cut(s) | 55, 58, 92, 370 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 239 |
| BmsI | GCATC | 1 cut(s) | 397 |
| BsaI | GGTCTC | 1 cut(s) | 284 |
| BsaJI | CCNNGG | 1 cut(s) | 75 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 248 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| Bse1I | ACTGG | 1 cut(s) | 280 |
| BseDI | CCNNGG | 1 cut(s) | 75 |
| BseGI | GGATG | 1 cut(s) | 232 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BseMII | CTCAG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 280 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseXI | GCAGC | 3 cut(s) | 40, 68, 355 |
| BsgI | GTGCAG | 1 cut(s) | 315 |
| BshFI | GGCC | 3 cut(s) | 74, 93, 240 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 1 cut(s) | 68 |
| BsiSI | CCGG | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 248 |
| BsmAI | GTCTC | 1 cut(s) | 284 |
| BsnI | GGCC | 3 cut(s) | 74, 93, 240 |
| Bso31I | GGTCTC | 1 cut(s) | 284 |
| BsoBI | CYCGRG | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 1 cut(s) | 69 |
| Bsp143I | GATC | 1 cut(s) | 166 |
| BspACI | CCGC | 2 cut(s) | 90, 284 |
| BspANI | GGCC | 3 cut(s) | 74, 93, 240 |
| BspCNI | CTCAG | 1 cut(s) | 224 |
| BspMAI | CTGCAG | 1 cut(s) | 58 |
| BspTNI | GGTCTC | 1 cut(s) | 284 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BsrI | ACTGG | 1 cut(s) | 280 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 1 cut(s) | 75 |
| BssMI | GATC | 1 cut(s) | 166 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| BstDEI | CTNAG | 1 cut(s) | 211 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 246 |
| BstF5I | GGATG | 1 cut(s) | 232 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstKTI | GATC | 1 cut(s) | 169 |
| BstMAI | GTCTC | 1 cut(s) | 284 |
| BstMBI | GATC | 1 cut(s) | 166 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 377 |
| BstSFI | CTRYAG | 1 cut(s) | 54 |
| BstV1I | GCAGC | 3 cut(s) | 40, 68, 355 |
| BsuI | GTATCC | 1 cut(s) | 106 |
| BsuRI | GGCC | 3 cut(s) | 74, 93, 240 |
| BtsCI | GGATG | 1 cut(s) | 232 |
| BtsIMutI | CAGTG | 1 cut(s) | 298 |
| CaiI | CAGNNNCTG | 1 cut(s) | 371 |
| CfoI | GCGC | 1 cut(s) | 382 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 239 |
| CviAII | CATG | 1 cut(s) | 353 |
| DdeI | CTNAG | 1 cut(s) | 211 |
| DpnI | GATC | 1 cut(s) | 168 |
| DpnII | GATC | 1 cut(s) | 166 |
| DriI | GACNNNNNGTC | 1 cut(s) | 276 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 276 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco31I | GGTCTC | 1 cut(s) | 284 |
| Eco88I | CYCGRG | 1 cut(s) | 68 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| FaeI | CATG | 1 cut(s) | 356 |
| FaiI | YATR | 4 cut(s) | 34, 341, 354, 436 |
| FatI | CATG | 1 cut(s) | 352 |
| FauI | CCCGC | 1 cut(s) | 291 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 4 cut(s) | 54, 57, 91, 369 |
| FokI | GGATG | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 4 cut(s) | 54, 57, 91, 369 |
| FspBI | CTAG | 2 cut(s) | 122, 411 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 4 cut(s) | 54, 57, 91, 369 |
| HaeIII | GGCC | 3 cut(s) | 74, 93, 240 |
| HapII | CCGG | 1 cut(s) | 237 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1II | CATG | 1 cut(s) | 356 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HinfI | GANTC | 4 cut(s) | 17, 188, 414, 425 |
| HpaII | CCGG | 1 cut(s) | 237 |
| Hpy188I | TCNGA | 3 cut(s) | 155, 214, 421 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 360 |
| HpyAV | CCTTC | 1 cut(s) | 412 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 296 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 377 |
| HpyF3I | CTNAG | 1 cut(s) | 211 |
| Hsp92II | CATG | 1 cut(s) | 356 |
| HspAI | GCGC | 1 cut(s) | 380 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 1 cut(s) | 166 |
| LmnI | GCTCC | 2 cut(s) | 403, 436 |
| LpnPI | CCDG | 8 cut(s) | 72, 206, 243, 250, 255, 261, 345, 357 |
| Lsp1109I | GCAGC | 3 cut(s) | 40, 68, 355 |
| LweI | GCATC | 1 cut(s) | 397 |
| MaeI | CTAG | 2 cut(s) | 122, 411 |
| MaeIII | GTNAC | 1 cut(s) | 157 |
| MalI | GATC | 1 cut(s) | 168 |
| MboI | GATC | 1 cut(s) | 166 |
| MboII | GAAGA | 1 cut(s) | 434 |
| MhlI | GDGCHC | 1 cut(s) | 69 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MnlI | CCTC | 3 cut(s) | 64, 169, 223 |
| MseI | TTAA | 1 cut(s) | 132 |
| MspA1I | CMGCKG | 1 cut(s) | 368 |
| MspI | CCGG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 377 |
| NdeII | GATC | 1 cut(s) | 166 |
| NlaIII | CATG | 1 cut(s) | 356 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| PaeR7I | CTCGAG | 1 cut(s) | 68 |
| PfeI | GAWTC | 3 cut(s) | 17, 414, 425 |
| PkrI | GCNGC | 4 cut(s) | 55, 58, 92, 370 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| PspPI | GGNCC | 1 cut(s) | 239 |
| PspXI | VCTCGAGB | 1 cut(s) | 68 |
| PstI | CTGCAG | 1 cut(s) | 58 |
| PstNI | CAGNNNCTG | 1 cut(s) | 371 |
| PvuII | CAGCTG | 1 cut(s) | 368 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 4 cut(s) | 54, 57, 91, 369 |
| Sau3AI | GATC | 1 cut(s) | 166 |
| Sau96I | GGNCC | 1 cut(s) | 239 |
| SchI | GAGTC | 1 cut(s) | 197 |
| SduI | GDGCHC | 1 cut(s) | 69 |
| SetI | ASST | 7 cut(s) | 61, 109, 131, 325, 370, 400, 433 |
| SfaNI | GCATC | 1 cut(s) | 397 |
| SfcI | CTRYAG | 1 cut(s) | 54 |
| Sfr274I | CTCGAG | 1 cut(s) | 68 |
| SlaI | CTCGAG | 1 cut(s) | 68 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| SsiI | CCGC | 2 cut(s) | 90, 284 |
| SspMI | CTAG | 2 cut(s) | 122, 411 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaqI | TCGA | 3 cut(s) | 69, 301, 405 |
| TauI | GCSGC | 1 cut(s) | 93 |
| TfiI | GAWTC | 3 cut(s) | 17, 414, 425 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 1 cut(s) | 298 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| TseI | GCWGC | 3 cut(s) | 53, 56, 368 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspGWI | ACGGA | 2 cut(s) | 125, 217 |
| TspRI | CASTG | 1 cut(s) | 298 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 246 |
| XbaI | TCTAGA | 1 cut(s) | 121 |
| XhoI | CTCGAG | 1 cut(s) | 68 |
| XspI | CTAG | 2 cut(s) | 122, 411 |