Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 18 |
| AccI | GTMKAC | 2 cut(s) | 665, 1074 |
| AciI | CCGC | 1 cut(s) | 11 |
| AcsI | RAATTY | 2 cut(s) | 586, 831 |
| AcuI | CTGAAG | 1 cut(s) | 448 |
| AfaI | GTAC | 2 cut(s) | 165, 1041 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 488 |
| AflIII | ACRYGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 3 cut(s) | 53, 211, 982 |
| AhlI | ACTAGT | 1 cut(s) | 734 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 168, 200, 796, 828 |
| AluBI | AGCT | 6 cut(s) | 218, 320, 565, 769, 853, 973 |
| AluI | AGCT | 6 cut(s) | 218, 320, 565, 769, 853, 973 |
| Alw21I | GWGCWC | 1 cut(s) | 1053 |
| Alw26I | GTCTC | 1 cut(s) | 491 |
| ApeKI | GCWGC | 1 cut(s) | 1001 |
| ApoI | RAATTY | 2 cut(s) | 586, 831 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 548 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 1 cut(s) | 436 |
| AsuHPI | GGTGA | 3 cut(s) | 298, 595, 1033 |
| AsuII | TTCGAA | 2 cut(s) | 193, 802 |
| AvaII | GGWCC | 1 cut(s) | 436 |
| BanII | GRGCYC | 2 cut(s) | 623, 964 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 322, 354 |
| BbsI | GAAGAC | 1 cut(s) | 330 |
| Bbv12I | GWGCWC | 1 cut(s) | 1053 |
| BbvCI | CCTCAGC | 1 cut(s) | 321 |
| BbvI | GCAGC | 1 cut(s) | 988 |
| BccI | CCATC | 1 cut(s) | 85 |
| BclI | TGATCA | 2 cut(s) | 3, 523 |
| BcoDI | GTCTC | 1 cut(s) | 491 |
| BcuI | ACTAGT | 1 cut(s) | 734 |
| BfaI | CTAG | 2 cut(s) | 693, 735 |
| BisI | GCNGC | 1 cut(s) | 1002 |
| BlsI | GCNGC | 1 cut(s) | 1003 |
| Bme18I | GGWCC | 1 cut(s) | 436 |
| BmgT120I | GGNCC | 1 cut(s) | 436 |
| BmiI | GGNNCC | 1 cut(s) | 438 |
| BmrI | ACTGGG | 1 cut(s) | 617 |
| BmsI | GCATC | 3 cut(s) | 69, 652, 731 |
| BmuI | ACTGGG | 1 cut(s) | 617 |
| BpiI | GAAGAC | 1 cut(s) | 330 |
| BpmI | CTGGAG | 1 cut(s) | 599 |
| Bpu10I | CCTNAGC | 1 cut(s) | 321 |
| Bpu14I | TTCGAA | 2 cut(s) | 193, 802 |
| BsaAI | YACGTR | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 143, 173, 524, 554 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 488 |
| Bse1I | ACTGG | 1 cut(s) | 623 |
| Bse3DI | GCAATG | 1 cut(s) | 127 |
| BseDI | CCNNGG | 1 cut(s) | 440 |
| BseGI | GGATG | 2 cut(s) | 246, 517 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 488 |
| BseMI | GCAATG | 1 cut(s) | 127 |
| BseMII | CTCAG | 3 cut(s) | 312, 705, 1038 |
| BseNI | ACTGG | 1 cut(s) | 623 |
| BseRI | GAGGAG | 1 cut(s) | 545 |
| BseXI | GCAGC | 1 cut(s) | 988 |
| BseYI | CCCAGC | 1 cut(s) | 973 |
| BsgI | GTGCAG | 3 cut(s) | 224, 759, 924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1053 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 488 |
| BsmAI | GTCTC | 1 cut(s) | 491 |
| Bsp119I | TTCGAA | 2 cut(s) | 193, 802 |
| Bsp1286I | GDGCHC | 3 cut(s) | 623, 964, 1053 |
| Bsp143I | GATC | 2 cut(s) | 3, 523 |
| Bsp19I | CCATGG | 1 cut(s) | 440 |
| BspACI | CCGC | 1 cut(s) | 11 |
| BspCNI | CTCAG | 3 cut(s) | 313, 706, 1039 |
| BspHI | TCATGA | 1 cut(s) | 646 |
| BspLI | GGNNCC | 1 cut(s) | 438 |
| BspT104I | TTCGAA | 2 cut(s) | 193, 802 |
| BsrDI | GCAATG | 1 cut(s) | 127 |
| BsrI | ACTGG | 1 cut(s) | 623 |
| BssECI | CCNNGG | 1 cut(s) | 440 |
| BssMI | GATC | 2 cut(s) | 3, 523 |
| BssNAI | GTATAC | 1 cut(s) | 666 |
| BssT1I | CCWWGG | 1 cut(s) | 440 |
| Bst1107I | GTATAC | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 2 cut(s) | 670, 707 |
| Bst6I | CTCTTC | 2 cut(s) | 347, 1070 |
| BstBAI | YACGTR | 1 cut(s) | 383 |
| BstBI | TTCGAA | 2 cut(s) | 193, 802 |
| BstC8I | GCNNGC | 5 cut(s) | 144, 720, 780, 952, 971 |
| BstDEI | CTNAG | 5 cut(s) | 321, 392, 608, 714, 1047 |
| BstDSI | CCRYGG | 1 cut(s) | 440 |
| BstEII | GGTNACC | 1 cut(s) | 680 |
| BstF5I | GGATG | 2 cut(s) | 246, 517 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstKTI | GATC | 2 cut(s) | 6, 526 |
| BstMAI | GTCTC | 1 cut(s) | 491 |
| BstMBI | GATC | 2 cut(s) | 3, 523 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 224, 385, 394, 571, 775, 975 |
| BstNSI | RCATGY | 3 cut(s) | 404, 782, 954 |
| BstPI | GGTNACC | 1 cut(s) | 680 |
| BstSNI | TACGTA | 1 cut(s) | 383 |
| BstV1I | GCAGC | 1 cut(s) | 988 |
| BstV2I | GAAGAC | 1 cut(s) | 330 |
| BstZ17I | GTATAC | 1 cut(s) | 666 |
| BtgI | CCRYGG | 1 cut(s) | 440 |
| BtsCI | GGATG | 2 cut(s) | 246, 517 |
| BtsIMutI | CAGTG | 2 cut(s) | 630, 712 |
| Cac8I | GCNNGC | 5 cut(s) | 144, 720, 780, 952, 971 |
| CciI | TCATGA | 1 cut(s) | 646 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 436 |
| CseI | GACGC | 1 cut(s) | 877 |
| Csp6I | GTAC | 2 cut(s) | 164, 1040 |
| CviQI | GTAC | 2 cut(s) | 164, 1040 |
| DdeI | CTNAG | 5 cut(s) | 321, 392, 608, 714, 1047 |
| DpnI | GATC | 2 cut(s) | 5, 525 |
| DpnII | GATC | 2 cut(s) | 3, 523 |
| DraI | TTTAAA | 1 cut(s) | 750 |
| Eam1104I | CTCTTC | 2 cut(s) | 347, 1070 |
| EarI | CTCTTC | 2 cut(s) | 347, 1070 |
| Eco105I | TACGTA | 1 cut(s) | 383 |
| Eco130I | CCWWGG | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 2 cut(s) | 623, 964 |
| Eco47I | GGWCC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 1 cut(s) | 448 |
| Eco91I | GGTNACC | 1 cut(s) | 680 |
| EcoO65I | GGTNACC | 1 cut(s) | 680 |
| EcoRI | GAATTC | 1 cut(s) | 831 |
| EcoT14I | CCWWGG | 1 cut(s) | 440 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 2 cut(s) | 623, 964 |
| ErhI | CCWWGG | 1 cut(s) | 440 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 168, 200, 207, 239, 819, 851, 962, 994 |
| FbaI | TGATCA | 2 cut(s) | 3, 523 |
| FblI | GTMKAC | 2 cut(s) | 665, 1074 |
| Fnu4HI | GCNGC | 1 cut(s) | 1002 |
| FokI | GGATG | 2 cut(s) | 233, 524 |
| FriOI | GRGCYC | 2 cut(s) | 623, 964 |
| Fsp4HI | GCNGC | 1 cut(s) | 1002 |
| FspBI | CTAG | 2 cut(s) | 693, 735 |
| FspI | TGCGCA | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 1002 |
| GsaI | CCCAGC | 1 cut(s) | 977 |
| GsuI | CTGGAG | 1 cut(s) | 599 |
| HgaI | GACGC | 1 cut(s) | 877 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HindIII | AAGCTT | 1 cut(s) | 767 |
| HinfI | GANTC | 2 cut(s) | 243, 787 |
| HphI | GGTGA | 3 cut(s) | 298, 595, 1033 |
| Hpy166II | GTNNAC | 4 cut(s) | 164, 666, 703, 1075 |
| Hpy188I | TCNGA | 4 cut(s) | 90, 300, 467, 786 |
| Hpy188III | TCNNGA | 3 cut(s) | 527, 578, 647 |
| Hpy8I | GTNNAC | 4 cut(s) | 164, 666, 703, 1075 |
| HpyAV | CCTTC | 2 cut(s) | 170, 472 |
| HpyCH4III | ACNGT | 2 cut(s) | 670, 707 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 382, 1057 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 224, 385, 394, 571, 775, 975 |
| HpyF3I | CTNAG | 5 cut(s) | 321, 392, 608, 714, 1047 |
| HpySE526I | ACGT | 3 cut(s) | 36, 382, 1057 |
| HspAI | GCGC | 1 cut(s) | 17 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 523 |
| Kzo9I | GATC | 2 cut(s) | 3, 523 |
| LmnI | GCTCC | 1 cut(s) | 562 |
| LpnPI | CCDG | 8 cut(s) | 431, 545, 563, 625, 636, 888, 916, 959 |
| Lsp1109I | GCAGC | 1 cut(s) | 988 |
| LweI | GCATC | 3 cut(s) | 69, 652, 731 |
| MaeI | CTAG | 2 cut(s) | 693, 735 |
| MaeII | ACGT | 3 cut(s) | 36, 382, 1057 |
| MaeIII | GTNAC | 3 cut(s) | 555, 680, 1058 |
| MalI | GATC | 2 cut(s) | 5, 525 |
| MboI | GATC | 2 cut(s) | 3, 523 |
| MboII | GAAGA | 6 cut(s) | 330, 364, 827, 1025, 1036, 1057 |
| MhlI | GDGCHC | 3 cut(s) | 623, 964, 1053 |
| MluCI | AATT | 6 cut(s) | 301, 374, 586, 696, 831, 1032 |
| MlyI | GAGTC | 1 cut(s) | 252 |
| MmeI | TCCRAC | 2 cut(s) | 53, 218 |
| MnlI | CCTC | 7 cut(s) | 316, 481, 523, 574, 585, 615, 1073 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MroXI | GAANNNNTTC | 1 cut(s) | 548 |
| MseI | TTAA | 4 cut(s) | 672, 749, 824, 990 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 224, 385, 394, 571, 775, 975 |
| NcoI | CCATGG | 1 cut(s) | 440 |
| NdeII | GATC | 2 cut(s) | 3, 523 |
| NlaIV | GGNNCC | 1 cut(s) | 438 |
| NsbI | TGCGCA | 1 cut(s) | 18 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 3 cut(s) | 404, 782, 954 |
| NspV | TTCGAA | 2 cut(s) | 193, 802 |
| PaeI | GCATGC | 2 cut(s) | 782, 954 |
| PagI | TCATGA | 1 cut(s) | 646 |
| PciI | ACATGT | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 1 cut(s) | 548 |
| PfeI | GAWTC | 1 cut(s) | 787 |
| PkrI | GCNGC | 1 cut(s) | 1003 |
| PleI | GAGTC | 1 cut(s) | 251 |
| PpsI | GAGTC | 1 cut(s) | 251 |
| Ppu21I | YACGTR | 1 cut(s) | 383 |
| PscI | ACATGT | 1 cut(s) | 400 |
| PspEI | GGTNACC | 1 cut(s) | 680 |
| PspFI | CCCAGC | 1 cut(s) | 973 |
| PspN4I | GGNNCC | 1 cut(s) | 438 |
| PspPI | GGNCC | 1 cut(s) | 436 |
| RsaI | GTAC | 2 cut(s) | 165, 1041 |
| RsaNI | GTAC | 2 cut(s) | 164, 1040 |
| SaqAI | TTAA | 4 cut(s) | 672, 749, 824, 990 |
| SatI | GCNGC | 1 cut(s) | 1002 |
| Sau3AI | GATC | 2 cut(s) | 3, 523 |
| Sau96I | GGNCC | 1 cut(s) | 436 |
| SchI | GAGTC | 1 cut(s) | 252 |
| SduI | GDGCHC | 3 cut(s) | 623, 964, 1053 |
| SfaNI | GCATC | 3 cut(s) | 69, 652, 731 |
| SfuI | TTCGAA | 2 cut(s) | 193, 802 |
| SinI | GGWCC | 1 cut(s) | 436 |
| SnaBI | TACGTA | 1 cut(s) | 383 |
| SpeI | ACTAGT | 1 cut(s) | 734 |
| SphI | GCATGC | 2 cut(s) | 782, 954 |
| Sse9I | AATT | 6 cut(s) | 301, 374, 586, 696, 831, 1032 |
| SsiI | CCGC | 1 cut(s) | 11 |
| SspI | AATATT | 1 cut(s) | 761 |
| SspMI | CTAG | 2 cut(s) | 693, 735 |
| StyI | CCWWGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 2 cut(s) | 670, 707 |
| TaiI | ACGT | 3 cut(s) | 39, 385, 1060 |
| TaqI | TCGA | 2 cut(s) | 193, 802 |
| TasI | AATT | 6 cut(s) | 301, 374, 586, 696, 831, 1032 |
| TatI | WGTACW | 1 cut(s) | 1039 |
| TfiI | GAWTC | 1 cut(s) | 787 |
| Tru1I | TTAA | 4 cut(s) | 672, 749, 824, 990 |
| Tru9I | TTAA | 4 cut(s) | 672, 749, 824, 990 |
| TscAI | CASTG | 2 cut(s) | 630, 712 |
| TseI | GCWGC | 1 cut(s) | 1001 |
| TspDTI | ATGAA | 3 cut(s) | 301, 528, 559 |
| TspGWI | ACGGA | 1 cut(s) | 449 |
| TspRI | CASTG | 2 cut(s) | 630, 712 |
| VpaK11BI | GGWCC | 1 cut(s) | 436 |
| XapI | RAATTY | 2 cut(s) | 586, 831 |
| XceI | RCATGY | 3 cut(s) | 404, 782, 954 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 630 |
| XmiI | GTMKAC | 2 cut(s) | 665, 1074 |
| XmnI | GAANNNNTTC | 1 cut(s) | 548 |
| XspI | CTAG | 2 cut(s) | 693, 735 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |