Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 6 - 32 | 1.1e-06 | Leucine rich repeat N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 281 |
| AclWI | GGATC | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 23 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 75, 163 |
| AgsI | TTSAA | 1 cut(s) | 19 |
| AjnI | CCWGG | 1 cut(s) | 74 |
| AluBI | AGCT | 2 cut(s) | 153, 207 |
| AluI | AGCT | 2 cut(s) | 153, 207 |
| AlwI | GGATC | 1 cut(s) | 106 |
| ApeKI | GCWGC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 1 cut(s) | 49 |
| AvaII | GGWCC | 1 cut(s) | 49 |
| BbvI | GCAGC | 1 cut(s) | 140 |
| BccI | CCATC | 1 cut(s) | 161 |
| BciT130I | CCWGG | 1 cut(s) | 76 |
| BclI | TGATCA | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| Bme1390I | CCNGG | 1 cut(s) | 76 |
| Bme18I | GGWCC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 1 cut(s) | 49 |
| BmiI | GGNNCC | 3 cut(s) | 50, 51, 80 |
| BmrFI | CCNGG | 1 cut(s) | 76 |
| BmsI | GCATC | 2 cut(s) | 13, 85 |
| BsaBI | GATNNNNATC | 1 cut(s) | 198 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 75, 163 |
| Bse8I | GATNNNNATC | 1 cut(s) | 198 |
| BseBI | CCWGG | 1 cut(s) | 76 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseJI | GATNNNNATC | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 75, 163 |
| BseXI | GCAGC | 1 cut(s) | 140 |
| BseYI | CCCAGC | 1 cut(s) | 203 |
| BsgI | GTGCAG | 1 cut(s) | 55 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 75, 163 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| Bsp143I | GATC | 3 cut(s) | 111, 178, 210 |
| BspACI | CCGC | 1 cut(s) | 281 |
| BspLI | GGNNCC | 3 cut(s) | 50, 51, 80 |
| BspPI | GGATC | 1 cut(s) | 106 |
| BssMI | GATC | 3 cut(s) | 111, 178, 210 |
| Bst2UI | CCWGG | 1 cut(s) | 76 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstKTI | GATC | 3 cut(s) | 114, 181, 213 |
| BstMBI | GATC | 3 cut(s) | 111, 178, 210 |
| BstNI | CCWGG | 1 cut(s) | 76 |
| BstSCI | CCNGG | 1 cut(s) | 74 |
| BstV1I | GCAGC | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| Cfr13I | GGNCC | 1 cut(s) | 49 |
| CsiI | ACCWGGT | 1 cut(s) | 74 |
| CviAII | CATG | 3 cut(s) | 83, 107, 158 |
| CviJI | RGCY | 2 cut(s) | 153, 207 |
| CviKI_1 | RGCY | 2 cut(s) | 153, 207 |
| DpnI | GATC | 3 cut(s) | 113, 180, 212 |
| DpnII | GATC | 3 cut(s) | 111, 178, 210 |
| EciI | GGCGGA | 1 cut(s) | 270 |
| Eco47I | GGWCC | 1 cut(s) | 49 |
| Eco57I | CTGAAG | 1 cut(s) | 23 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| EcoRII | CCWGG | 1 cut(s) | 74 |
| FaeI | CATG | 3 cut(s) | 86, 110, 161 |
| FaiI | YATR | 5 cut(s) | 84, 108, 129, 159, 291 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FatI | CATG | 3 cut(s) | 82, 106, 157 |
| FbaI | TGATCA | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| FokI | GGATG | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| GluI | GCNGC | 1 cut(s) | 154 |
| GsaI | CCCAGC | 1 cut(s) | 207 |
| Hin1II | CATG | 3 cut(s) | 86, 110, 161 |
| HinfI | GANTC | 1 cut(s) | 261 |
| Hpy188I | TCNGA | 1 cut(s) | 42 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4V | TGCA | 2 cut(s) | 72, 302 |
| Hsp92II | CATG | 3 cut(s) | 86, 110, 161 |
| KflI | GGGWCCC | 1 cut(s) | 49 |
| Ksp22I | TGATCA | 1 cut(s) | 210 |
| Kzo9I | GATC | 3 cut(s) | 111, 178, 210 |
| LpnPI | CCDG | 6 cut(s) | 44, 61, 82, 88, 103, 217 |
| Lsp1109I | GCAGC | 1 cut(s) | 140 |
| LweI | GCATC | 2 cut(s) | 13, 85 |
| MabI | ACCWGGT | 1 cut(s) | 74 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 3 cut(s) | 113, 180, 212 |
| MboI | GATC | 3 cut(s) | 111, 178, 210 |
| MboII | GAAGA | 3 cut(s) | 29, 237, 256 |
| MnlI | CCTC | 2 cut(s) | 157, 222 |
| MseI | TTAA | 1 cut(s) | 119 |
| MspR9I | CCNGG | 1 cut(s) | 76 |
| MvaI | CCWGG | 1 cut(s) | 76 |
| NdeII | GATC | 3 cut(s) | 111, 178, 210 |
| NlaIII | CATG | 3 cut(s) | 86, 110, 161 |
| NlaIV | GGNNCC | 3 cut(s) | 50, 51, 80 |
| PfeI | GAWTC | 1 cut(s) | 261 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| PpuMI | RGGWCCY | 1 cut(s) | 49 |
| Psp5II | RGGWCCY | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 74 |
| PspFI | CCCAGC | 1 cut(s) | 203 |
| PspGI | CCWGG | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 3 cut(s) | 50, 51, 80 |
| PspPI | GGNCC | 1 cut(s) | 49 |
| PspPPI | RGGWCCY | 1 cut(s) | 49 |
| SaqAI | TTAA | 1 cut(s) | 119 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 3 cut(s) | 111, 178, 210 |
| Sau96I | GGNCC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 1 cut(s) | 76 |
| SetI | ASST | 4 cut(s) | 77, 92, 155, 209 |
| SexAI | ACCWGGT | 1 cut(s) | 74 |
| SfaNI | GCATC | 2 cut(s) | 13, 85 |
| SinI | GGWCC | 1 cut(s) | 49 |
| SsiI | CCGC | 1 cut(s) | 281 |
| SspI | AATATT | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 74 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TfiI | GAWTC | 1 cut(s) | 261 |
| Tru1I | TTAA | 1 cut(s) | 119 |
| Tru9I | TTAA | 1 cut(s) | 119 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TseI | GCWGC | 1 cut(s) | 153 |
| TspDTI | ATGAA | 1 cut(s) | 241 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 1 cut(s) | 129 |
| VpaK11BI | GGWCC | 1 cut(s) | 49 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |