Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 71 | 4.3e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 192 |
| AciI | CCGC | 2 cut(s) | 310, 458 |
| AcoI | YGGCCR | 1 cut(s) | 445 |
| AfaI | GTAC | 1 cut(s) | 6 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 159, 454 |
| AgsI | TTSAA | 3 cut(s) | 52, 87, 266 |
| AjnI | CCWGG | 1 cut(s) | 145 |
| AluBI | AGCT | 4 cut(s) | 59, 78, 203, 232 |
| AluI | AGCT | 4 cut(s) | 59, 78, 203, 232 |
| Alw26I | GTCTC | 1 cut(s) | 297 |
| AoxI | GGCC | 2 cut(s) | 407, 445 |
| ApeKI | GCWGC | 1 cut(s) | 343 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 31, 63 |
| AspLEI | GCGC | 1 cut(s) | 193 |
| AspS9I | GGNCC | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 319 |
| BalI | TGGCCA | 1 cut(s) | 447 |
| BanII | GRGCYC | 1 cut(s) | 328 |
| BbsI | GAAGAC | 1 cut(s) | 112 |
| BbvI | GCAGC | 1 cut(s) | 330 |
| BccI | CCATC | 1 cut(s) | 170 |
| BceAI | ACGGC | 1 cut(s) | 394 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 1 cut(s) | 147 |
| BciVI | GTATCC | 1 cut(s) | 235 |
| BcoDI | GTCTC | 1 cut(s) | 297 |
| BfaI | CTAG | 4 cut(s) | 20, 171, 275, 466 |
| BfuI | GTATCC | 1 cut(s) | 235 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 2 cut(s) | 311, 344 |
| BlsI | GCNGC | 2 cut(s) | 312, 345 |
| Bme1390I | CCNGG | 1 cut(s) | 147 |
| BmgT120I | GGNCC | 1 cut(s) | 407 |
| BmiI | GGNNCC | 1 cut(s) | 151 |
| BmrFI | CCNGG | 1 cut(s) | 147 |
| BmsI | GCATC | 1 cut(s) | 259 |
| BpiI | GAAGAC | 1 cut(s) | 112 |
| Bpu10I | CCTNAGC | 1 cut(s) | 79 |
| BsaJI | CCNNGG | 1 cut(s) | 319 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 235, 265, 363, 393 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 159, 454 |
| BseBI | CCWGG | 1 cut(s) | 147 |
| BseDI | CCNNGG | 1 cut(s) | 319 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 159, 454 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseRI | GAGGAG | 2 cut(s) | 447, 450 |
| BseSI | GKGCMC | 1 cut(s) | 319 |
| BseXI | GCAGC | 1 cut(s) | 330 |
| BshFI | GGCC | 2 cut(s) | 409, 447 |
| BsiSI | CCGG | 1 cut(s) | 307 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 159, 454 |
| BsmAI | GTCTC | 1 cut(s) | 297 |
| BsmI | GAATGC | 3 cut(s) | 187, 193, 217 |
| BsnI | GGCC | 2 cut(s) | 409, 447 |
| Bsp1286I | GDGCHC | 2 cut(s) | 319, 328 |
| Bsp143I | GATC | 1 cut(s) | 439 |
| BspACI | CCGC | 2 cut(s) | 310, 458 |
| BspANI | GGCC | 2 cut(s) | 409, 447 |
| BspCNI | CTCAG | 1 cut(s) | 92 |
| BspLI | GGNNCC | 1 cut(s) | 151 |
| BssECI | CCNNGG | 1 cut(s) | 319 |
| BssMI | GATC | 1 cut(s) | 439 |
| BssT1I | CCWWGG | 1 cut(s) | 319 |
| Bst2UI | CCWGG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 1 cut(s) | 452 |
| BstC8I | GCNNGC | 1 cut(s) | 315 |
| BstDEI | CTNAG | 3 cut(s) | 55, 79, 204 |
| BstHHI | GCGC | 1 cut(s) | 193 |
| BstKTI | GATC | 1 cut(s) | 442 |
| BstMAI | GTCTC | 1 cut(s) | 297 |
| BstMBI | GATC | 1 cut(s) | 439 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 209, 223, 323 |
| BstNI | CCWGG | 1 cut(s) | 147 |
| BstSCI | CCNGG | 1 cut(s) | 145 |
| BstSLI | GKGCMC | 1 cut(s) | 319 |
| BstV1I | GCAGC | 1 cut(s) | 330 |
| BstV2I | GAAGAC | 1 cut(s) | 112 |
| BsuI | GTATCC | 1 cut(s) | 235 |
| BsuRI | GGCC | 2 cut(s) | 409, 447 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 1 cut(s) | 315 |
| CfoI | GCGC | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 1 cut(s) | 407 |
| Csp6I | GTAC | 1 cut(s) | 5 |
| CviAII | CATG | 1 cut(s) | 154 |
| CviQI | GTAC | 1 cut(s) | 5 |
| DdeI | CTNAG | 3 cut(s) | 55, 79, 204 |
| DpnI | GATC | 1 cut(s) | 441 |
| DpnII | GATC | 1 cut(s) | 439 |
| EaeI | YGGCCR | 1 cut(s) | 445 |
| Eco130I | CCWWGG | 1 cut(s) | 319 |
| Eco24I | GRGCYC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 319 |
| EcoT38I | GRGCYC | 1 cut(s) | 328 |
| ErhI | CCWWGG | 1 cut(s) | 319 |
| FaeI | CATG | 1 cut(s) | 157 |
| FaiI | YATR | 7 cut(s) | 29, 102, 114, 143, 155, 165, 361 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 197, 229, 281, 313 |
| FatI | CATG | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 2 cut(s) | 311, 344 |
| FriOI | GRGCYC | 1 cut(s) | 328 |
| Fsp4HI | GCNGC | 2 cut(s) | 311, 344 |
| FspBI | CTAG | 4 cut(s) | 20, 171, 275, 466 |
| FspI | TGCGCA | 1 cut(s) | 192 |
| GlaI | GCGC | 1 cut(s) | 192 |
| GluI | GCNGC | 2 cut(s) | 311, 344 |
| HaeIII | GGCC | 2 cut(s) | 409, 447 |
| HapII | CCGG | 1 cut(s) | 307 |
| HhaI | GCGC | 1 cut(s) | 193 |
| Hin1II | CATG | 1 cut(s) | 157 |
| Hin6I | GCGC | 1 cut(s) | 191 |
| HinP1I | GCGC | 1 cut(s) | 191 |
| HinfI | GANTC | 2 cut(s) | 44, 108 |
| HpaII | CCGG | 1 cut(s) | 307 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188III | TCNNGA | 2 cut(s) | 171, 266 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| Hpy99I | CGWCG | 3 cut(s) | 337, 368, 415 |
| HpyAV | CCTTC | 3 cut(s) | 122, 307, 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 452 |
| HpyCH4IV | ACGT | 1 cut(s) | 363 |
| HpyCH4V | TGCA | 2 cut(s) | 217, 393 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 209, 223, 323 |
| HpyF3I | CTNAG | 3 cut(s) | 55, 79, 204 |
| HpySE526I | ACGT | 1 cut(s) | 363 |
| Hsp92II | CATG | 1 cut(s) | 157 |
| HspAI | GCGC | 1 cut(s) | 191 |
| Kzo9I | GATC | 1 cut(s) | 439 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LpnPI | CCDG | 7 cut(s) | 66, 132, 159, 207, 320, 379, 390 |
| Lsp1109I | GCAGC | 1 cut(s) | 330 |
| LweI | GCATC | 1 cut(s) | 259 |
| MaeI | CTAG | 4 cut(s) | 20, 171, 275, 466 |
| MaeII | ACGT | 1 cut(s) | 363 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 1 cut(s) | 441 |
| MboI | GATC | 1 cut(s) | 439 |
| MboII | GAAGA | 1 cut(s) | 117 |
| MfeI | CAATTG | 1 cut(s) | 388 |
| MhlI | GDGCHC | 2 cut(s) | 319, 328 |
| MlsI | TGGCCA | 1 cut(s) | 447 |
| MluCI | AATT | 2 cut(s) | 87, 388 |
| MluNI | TGGCCA | 1 cut(s) | 447 |
| MlyI | GAGTC | 1 cut(s) | 102 |
| MnlI | CCTC | 8 cut(s) | 109, 261, 365, 390, 395, 415, 425, 428 |
| Mox20I | TGGCCA | 1 cut(s) | 447 |
| MscI | TGGCCA | 1 cut(s) | 447 |
| Msp20I | TGGCCA | 1 cut(s) | 447 |
| MspA1I | CMGCKG | 1 cut(s) | 232 |
| MspI | CCGG | 1 cut(s) | 307 |
| MspR9I | CCNGG | 1 cut(s) | 147 |
| MunI | CAATTG | 1 cut(s) | 388 |
| Mva1269I | GAATGC | 3 cut(s) | 187, 193, 217 |
| MvaI | CCWGG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 209, 223, 323 |
| NdeII | GATC | 1 cut(s) | 439 |
| NlaIII | CATG | 1 cut(s) | 157 |
| NlaIV | GGNNCC | 1 cut(s) | 151 |
| NmuCI | GTSAC | 1 cut(s) | 37 |
| NsbI | TGCGCA | 1 cut(s) | 192 |
| PctI | GAATGC | 3 cut(s) | 187, 193, 217 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PkrI | GCNGC | 2 cut(s) | 312, 345 |
| PleI | GAGTC | 1 cut(s) | 102 |
| PpsI | GAGTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 145 |
| PspGI | CCWGG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 1 cut(s) | 151 |
| PspPI | GGNCC | 1 cut(s) | 407 |
| PvuII | CAGCTG | 1 cut(s) | 232 |
| RsaI | GTAC | 1 cut(s) | 6 |
| RsaNI | GTAC | 1 cut(s) | 5 |
| SatI | GCNGC | 2 cut(s) | 311, 344 |
| Sau3AI | GATC | 1 cut(s) | 439 |
| Sau96I | GGNCC | 1 cut(s) | 407 |
| SchI | GAGTC | 1 cut(s) | 102 |
| ScrFI | CCNGG | 1 cut(s) | 147 |
| SduI | GDGCHC | 2 cut(s) | 319, 328 |
| SfaNI | GCATC | 1 cut(s) | 259 |
| Sse9I | AATT | 2 cut(s) | 87, 388 |
| SsiI | CCGC | 2 cut(s) | 310, 458 |
| SspMI | CTAG | 4 cut(s) | 20, 171, 275, 466 |
| StyD4I | CCNGG | 1 cut(s) | 145 |
| StyI | CCWWGG | 1 cut(s) | 319 |
| TaaI | ACNGT | 1 cut(s) | 452 |
| TaiI | ACGT | 1 cut(s) | 366 |
| TaqI | TCGA | 2 cut(s) | 282, 335 |
| TasI | AATT | 2 cut(s) | 87, 388 |
| TauI | GCSGC | 1 cut(s) | 313 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 455 |
| TseFI | GTSAC | 1 cut(s) | 37 |
| TseI | GCWGC | 1 cut(s) | 343 |
| Tsp45I | GTSAC | 1 cut(s) | 37 |
| TspRI | CASTG | 1 cut(s) | 455 |
| XbaI | TCTAGA | 1 cut(s) | 170 |
| XspI | CTAG | 4 cut(s) | 20, 171, 275, 466 |