ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 1308, 1428 |
| AccII | CGCG | 3 cut(s) | 91, 1331, 1337 |
| AccIII | TCCGGA | 1 cut(s) | 1285 |
| AciI | CCGC | 4 cut(s) | 48, 104, 888, 1329 |
| AclWI | GGATC | 1 cut(s) | 1078 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 4 cut(s) | 216, 763, 1190, 1223 |
| AdeI | CACNNNGTG | 3 cut(s) | 913, 1021, 1043 |
| AfaI | GTAC | 5 cut(s) | 405, 552, 1066, 1145, 1273 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 512, 751, 788, 792 |
| AflII | CTTAAG | 1 cut(s) | 797 |
| AgsI | TTSAA | 7 cut(s) | 221, 247, 496, 731, 831, 935, 1347 |
| AjnI | CCWGG | 2 cut(s) | 325, 1303 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1147, 1179 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 343, 375 |
| AluBI | AGCT | 6 cut(s) | 388, 685, 689, 734, 953, 1293 |
| AluI | AGCT | 6 cut(s) | 388, 685, 689, 734, 953, 1293 |
| Alw21I | GWGCWC | 2 cut(s) | 194, 909 |
| Alw26I | GTCTC | 1 cut(s) | 440 |
| Alw44I | GTGCAC | 1 cut(s) | 905 |
| AlwI | GGATC | 1 cut(s) | 1078 |
| Ama87I | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| Aor13HI | TCCGGA | 1 cut(s) | 1285 |
| AoxI | GGCC | 2 cut(s) | 69, 1124 |
| ApaLI | GTGCAC | 1 cut(s) | 905 |
| ApeKI | GCWGC | 4 cut(s) | 24, 42, 437, 953 |
| ApoI | RAATTY | 4 cut(s) | 216, 763, 1190, 1223 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1190 |
| AspLEI | GCGC | 3 cut(s) | 93, 1115, 1339 |
| AsuC2I | CCSGG | 3 cut(s) | 746, 788, 789 |
| AsuHPI | GGTGA | 1 cut(s) | 1379 |
| AsuNHI | GCTAGC | 1 cut(s) | 685 |
| AvaI | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| BaeGI | GKGCMC | 3 cut(s) | 909, 1311, 1433 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1242, 1275 |
| BalI | TGGCCA | 1 cut(s) | 71 |
| BanI | GGYRCC | 2 cut(s) | 1308, 1428 |
| Bbv12I | GWGCWC | 2 cut(s) | 194, 909 |
| BbvI | GCAGC | 4 cut(s) | 11, 29, 424, 940 |
| BccI | CCATC | 3 cut(s) | 172, 410, 1389 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 939, 973 |
| BciT130I | CCWGG | 2 cut(s) | 327, 1305 |
| BciVI | GTATCC | 1 cut(s) | 1166 |
| BclI | TGATCA | 2 cut(s) | 679, 1236 |
| BcnI | CCSGG | 3 cut(s) | 746, 788, 789 |
| BcoDI | GTCTC | 1 cut(s) | 440 |
| BfaI | CTAG | 2 cut(s) | 686, 1100 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BfrI | CTTAAG | 1 cut(s) | 797 |
| BfuI | GTATCC | 1 cut(s) | 1166 |
| BisI | GCNGC | 4 cut(s) | 25, 43, 438, 954 |
| BlsI | GCNGC | 4 cut(s) | 26, 44, 439, 955 |
| Bme1390I | CCNGG | 5 cut(s) | 327, 746, 788, 789, 1305 |
| BmeT110I | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| BmiI | GGNNCC | 3 cut(s) | 581, 1310, 1430 |
| BmrFI | CCNGG | 5 cut(s) | 327, 746, 788, 789, 1305 |
| BmrI | ACTGGG | 1 cut(s) | 521 |
| BmsI | GCATC | 4 cut(s) | 102, 586, 680, 814 |
| BmtI | GCTAGC | 1 cut(s) | 689 |
| BmuI | ACTGGG | 1 cut(s) | 521 |
| BpmI | CTGGAG | 1 cut(s) | 972 |
| BpuMI | CCSGG | 3 cut(s) | 746, 788, 789 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 7 cut(s) | 8, 143, 326, 786, 787, 1304, 1433 |
| BsaWI | WCCGGW | 2 cut(s) | 1106, 1285 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 512, 751, 788, 792 |
| Bse1I | ACTGG | 3 cut(s) | 516, 989, 1427 |
| Bse3DI | GCAATG | 1 cut(s) | 1362 |
| BseAI | TCCGGA | 1 cut(s) | 1285 |
| BseBI | CCWGG | 2 cut(s) | 327, 1305 |
| BseDI | CCNNGG | 7 cut(s) | 8, 143, 326, 786, 787, 1304, 1433 |
| BseGI | GGATG | 4 cut(s) | 421, 601, 671, 1423 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 512, 751, 788, 792 |
| BseMI | GCAATG | 1 cut(s) | 1362 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 3 cut(s) | 516, 989, 1427 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseSI | GKGCMC | 3 cut(s) | 909, 1311, 1433 |
| BseXI | GCAGC | 4 cut(s) | 11, 29, 424, 940 |
| BsgI | GTGCAG | 2 cut(s) | 10, 542 |
| Bsh1236I | CGCG | 3 cut(s) | 91, 1331, 1337 |
| BshFI | GGCC | 2 cut(s) | 71, 1126 |
| BshNI | GGYRCC | 2 cut(s) | 1308, 1428 |
| BsiHKAI | GWGCWC | 2 cut(s) | 194, 909 |
| BsiHKCI | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| BsiSI | CCGG | 4 cut(s) | 745, 788, 1107, 1286 |
| BslFI | GGGAC | 2 cut(s) | 26, 298 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 512, 751, 788, 792 |
| BsmAI | GTCTC | 1 cut(s) | 440 |
| BsmBI | CGTCTC | 1 cut(s) | 440 |
| BsmFI | GGGAC | 2 cut(s) | 26, 298 |
| BsnI | GGCC | 2 cut(s) | 71, 1126 |
| BsoBI | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| Bsp1286I | GDGCHC | 4 cut(s) | 194, 909, 1311, 1433 |
| Bsp13I | TCCGGA | 1 cut(s) | 1285 |
| Bsp143I | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| BspACI | CCGC | 4 cut(s) | 48, 104, 888, 1329 |
| BspANI | GGCC | 2 cut(s) | 71, 1126 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspEI | TCCGGA | 1 cut(s) | 1285 |
| BspFNI | CGCG | 3 cut(s) | 91, 1331, 1337 |
| BspLI | GGNNCC | 3 cut(s) | 581, 1310, 1430 |
| BspMAI | CTGCAG | 1 cut(s) | 442 |
| BspOI | GCTAGC | 1 cut(s) | 689 |
| BspPI | GGATC | 1 cut(s) | 1078 |
| BspQI | GCTCTTC | 1 cut(s) | 1272 |
| BspT107I | GGYRCC | 2 cut(s) | 1308, 1428 |
| BspTI | CTTAAG | 1 cut(s) | 797 |
| BsrDI | GCAATG | 1 cut(s) | 1362 |
| BsrI | ACTGG | 3 cut(s) | 516, 989, 1427 |
| BssECI | CCNNGG | 7 cut(s) | 8, 143, 326, 786, 787, 1304, 1433 |
| BssMI | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| BssT1I | CCWWGG | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 2 cut(s) | 327, 1305 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 771, 931 |
| Bst6I | CTCTTC | 1 cut(s) | 1272 |
| BstAFI | CTTAAG | 1 cut(s) | 797 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 529, 538 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 4 cut(s) | 73, 687, 946, 958 |
| BstDEI | CTNAG | 2 cut(s) | 126, 900 |
| BstDSI | CCRYGG | 1 cut(s) | 1433 |
| BstF5I | GGATG | 4 cut(s) | 421, 601, 671, 1423 |
| BstFNI | CGCG | 3 cut(s) | 91, 1331, 1337 |
| BstHHI | GCGC | 3 cut(s) | 93, 1115, 1339 |
| BstKTI | GATC | 4 cut(s) | 132, 682, 1086, 1239 |
| BstMAI | GTCTC | 1 cut(s) | 440 |
| BstMBI | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 529, 538, 894, 950, 992 |
| BstNI | CCWGG | 2 cut(s) | 327, 1305 |
| BstNSI | RCATGY | 3 cut(s) | 262, 461, 960 |
| BstSCI | CCNGG | 5 cut(s) | 325, 744, 786, 787, 1303 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstSLI | GKGCMC | 3 cut(s) | 909, 1311, 1433 |
| BstUI | CGCG | 3 cut(s) | 91, 1331, 1337 |
| BstV1I | GCAGC | 4 cut(s) | 11, 29, 424, 940 |
| BstX2I | RGATCY | 1 cut(s) | 1083 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 842, 1319 |
| BstYI | RGATCY | 1 cut(s) | 1083 |
| BsuI | GTATCC | 1 cut(s) | 1166 |
| BsuRI | GGCC | 2 cut(s) | 71, 1126 |
| BtgI | CCRYGG | 1 cut(s) | 1433 |
| BtsCI | GGATG | 4 cut(s) | 421, 601, 671, 1423 |
| BtsI | GCAGTG | 1 cut(s) | 907 |
| BtsIMutI | CAGTG | 3 cut(s) | 509, 776, 907 |
| Cac8I | GCNNGC | 4 cut(s) | 73, 687, 946, 958 |
| CfoI | GCGC | 3 cut(s) | 93, 1115, 1339 |
| Cfr9I | CCCGGG | 1 cut(s) | 787 |
| Csp6I | GTAC | 5 cut(s) | 404, 551, 1065, 1144, 1272 |
| CviAII | CATG | 5 cut(s) | 259, 458, 542, 957, 1355 |
| CviQI | GTAC | 5 cut(s) | 404, 551, 1065, 1144, 1272 |
| DdeI | CTNAG | 2 cut(s) | 126, 900 |
| DpnI | GATC | 4 cut(s) | 131, 681, 1085, 1238 |
| DpnII | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| DraIII | CACNNNGTG | 3 cut(s) | 913, 1021, 1043 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 1 cut(s) | 1272 |
| EarI | CTCTTC | 1 cut(s) | 1272 |
| EciI | GGCGGA | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 1 cut(s) | 143 |
| Eco88I | CYCGRG | 3 cut(s) | 7, 787, 1391 |
| EcoRI | GAATTC | 2 cut(s) | 763, 1190 |
| EcoRII | CCWGG | 2 cut(s) | 325, 1303 |
| EcoT14I | CCWWGG | 1 cut(s) | 143 |
| EcoT22I | ATGCAT | 1 cut(s) | 459 |
| ErhI | CCWWGG | 1 cut(s) | 143 |
| Esp3I | CGTCTC | 1 cut(s) | 440 |
| FaeI | CATG | 5 cut(s) | 262, 461, 545, 960, 1358 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 329, 361 |
| FaqI | GGGAC | 2 cut(s) | 26, 298 |
| FatI | CATG | 5 cut(s) | 258, 457, 541, 956, 1354 |
| FauNDI | CATATG | 2 cut(s) | 534, 1318 |
| FbaI | TGATCA | 2 cut(s) | 679, 1236 |
| Fnu4HI | GCNGC | 4 cut(s) | 25, 43, 438, 954 |
| FokI | GGATG | 4 cut(s) | 428, 608, 658, 1430 |
| Fsp4HI | GCNGC | 4 cut(s) | 25, 43, 438, 954 |
| FspBI | CTAG | 2 cut(s) | 686, 1100 |
| GlaI | GCGC | 3 cut(s) | 92, 1114, 1338 |
| GluI | GCNGC | 4 cut(s) | 25, 43, 438, 954 |
| GsuI | CTGGAG | 1 cut(s) | 972 |
| HaeIII | GGCC | 2 cut(s) | 71, 1126 |
| HapII | CCGG | 4 cut(s) | 745, 788, 1107, 1286 |
| HhaI | GCGC | 3 cut(s) | 93, 1115, 1339 |
| Hin1II | CATG | 5 cut(s) | 262, 461, 545, 960, 1358 |
| Hin6I | GCGC | 3 cut(s) | 91, 1113, 1337 |
| HinP1I | GCGC | 3 cut(s) | 91, 1113, 1337 |
| HinfI | GANTC | 4 cut(s) | 775, 1001, 1070, 1394 |
| HpaII | CCGG | 4 cut(s) | 745, 788, 1107, 1286 |
| HphI | GGTGA | 1 cut(s) | 1379 |
| Hpy166II | GTNNAC | 3 cut(s) | 343, 774, 907 |
| Hpy188I | TCNGA | 3 cut(s) | 127, 268, 1006 |
| Hpy188III | TCNNGA | 5 cut(s) | 247, 610, 1087, 1100, 1286 |
| Hpy8I | GTNNAC | 3 cut(s) | 343, 774, 907 |
| Hpy99I | CGWCG | 1 cut(s) | 402 |
| HpyAV | CCTTC | 7 cut(s) | 325, 478, 516, 628, 747, 792, 1180 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 771, 931 |
| HpyCH4IV | ACGT | 4 cut(s) | 15, 65, 553, 1017 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 529, 538, 894, 950, 992 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 900 |
| HpySE526I | ACGT | 4 cut(s) | 15, 65, 553, 1017 |
| Hsp92II | CATG | 5 cut(s) | 262, 461, 545, 960, 1358 |
| HspAI | GCGC | 3 cut(s) | 91, 1113, 1337 |
| Kpn2I | TCCGGA | 1 cut(s) | 1285 |
| Ksp22I | TGATCA | 2 cut(s) | 679, 1236 |
| Kzo9I | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| LguI | GCTCTTC | 1 cut(s) | 1272 |
| LmnI | GCTCC | 3 cut(s) | 50, 739, 991 |
| Lsp1109I | GCAGC | 4 cut(s) | 11, 29, 424, 940 |
| LweI | GCATC | 4 cut(s) | 102, 586, 680, 814 |
| MaeI | CTAG | 2 cut(s) | 686, 1100 |
| MaeII | ACGT | 4 cut(s) | 15, 65, 553, 1017 |
| MaeIII | GTNAC | 3 cut(s) | 697, 1021, 1322 |
| MalI | GATC | 4 cut(s) | 131, 681, 1085, 1238 |
| MboI | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| MboII | GAAGA | 4 cut(s) | 354, 707, 1259, 1376 |
| MflI | RGATCY | 1 cut(s) | 1083 |
| MhlI | GDGCHC | 4 cut(s) | 194, 909, 1311, 1433 |
| MlsI | TGGCCA | 1 cut(s) | 71 |
| MluNI | TGGCCA | 1 cut(s) | 71 |
| MlyI | GAGTC | 3 cut(s) | 769, 1010, 1403 |
| Mox20I | TGGCCA | 1 cut(s) | 71 |
| Mph1103I | ATGCAT | 1 cut(s) | 459 |
| MroI | TCCGGA | 1 cut(s) | 1285 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1190 |
| MscI | TGGCCA | 1 cut(s) | 71 |
| MseI | TTAA | 5 cut(s) | 206, 336, 798, 861, 1032 |
| MslI | CAYNNNNRTG | 1 cut(s) | 840 |
| Msp20I | TGGCCA | 1 cut(s) | 71 |
| MspCI | CTTAAG | 1 cut(s) | 797 |
| MspI | CCGG | 4 cut(s) | 745, 788, 1107, 1286 |
| MspR9I | CCNGG | 5 cut(s) | 327, 746, 788, 789, 1305 |
| MvaI | CCWGG | 2 cut(s) | 327, 1305 |
| MvnI | CGCG | 3 cut(s) | 91, 1331, 1337 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 529, 538, 894, 950, 992 |
| NciI | CCSGG | 3 cut(s) | 746, 788, 789 |
| NdeI | CATATG | 2 cut(s) | 534, 1318 |
| NdeII | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| NheI | GCTAGC | 1 cut(s) | 685 |
| NlaIII | CATG | 5 cut(s) | 262, 461, 545, 960, 1358 |
| NlaIV | GGNNCC | 3 cut(s) | 581, 1310, 1430 |
| NmeAIII | GCCGAG | 1 cut(s) | 974 |
| NmuCI | GTSAC | 1 cut(s) | 1021 |
| NsiI | ATGCAT | 1 cut(s) | 459 |
| NspI | RCATGY | 3 cut(s) | 262, 461, 960 |
| PaeI | GCATGC | 1 cut(s) | 960 |
| PaeR7I | CTCGAG | 1 cut(s) | 1391 |
| PciSI | GCTCTTC | 1 cut(s) | 1272 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1190 |
| PfeI | GAWTC | 1 cut(s) | 1070 |
| PkrI | GCNGC | 4 cut(s) | 26, 44, 439, 955 |
| PleI | GAGTC | 3 cut(s) | 769, 1009, 1402 |
| PpsI | GAGTC | 3 cut(s) | 769, 1009, 1402 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| Psp6I | CCWGG | 2 cut(s) | 325, 1303 |
| PspGI | CCWGG | 2 cut(s) | 325, 1303 |
| PspN4I | GGNNCC | 3 cut(s) | 581, 1310, 1430 |
| PspXI | VCTCGAGB | 1 cut(s) | 1391 |
| PstI | CTGCAG | 1 cut(s) | 442 |
| PsuI | RGATCY | 1 cut(s) | 1083 |
| RsaI | GTAC | 5 cut(s) | 405, 552, 1066, 1145, 1273 |
| RsaNI | GTAC | 5 cut(s) | 404, 551, 1065, 1144, 1272 |
| RseI | CAYNNNNRTG | 1 cut(s) | 840 |
| SapI | GCTCTTC | 1 cut(s) | 1272 |
| SaqAI | TTAA | 5 cut(s) | 206, 336, 798, 861, 1032 |
| SatI | GCNGC | 4 cut(s) | 25, 43, 438, 954 |
| Sau3AI | GATC | 4 cut(s) | 129, 679, 1083, 1236 |
| SchI | GAGTC | 3 cut(s) | 769, 1010, 1403 |
| ScrFI | CCNGG | 5 cut(s) | 327, 746, 788, 789, 1305 |
| SduI | GDGCHC | 4 cut(s) | 194, 909, 1311, 1433 |
| SfaNI | GCATC | 4 cut(s) | 102, 586, 680, 814 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| Sfr274I | CTCGAG | 1 cut(s) | 1391 |
| SlaI | CTCGAG | 1 cut(s) | 1391 |
| SmaI | CCCGGG | 1 cut(s) | 789 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 840 |
| SmlI | CTYRAG | 2 cut(s) | 797, 1391 |
| SmoI | CTYRAG | 2 cut(s) | 797, 1391 |
| SphI | GCATGC | 1 cut(s) | 960 |
| SsiI | CCGC | 4 cut(s) | 48, 104, 888, 1329 |
| SspMI | CTAG | 2 cut(s) | 686, 1100 |
| StyD4I | CCNGG | 5 cut(s) | 325, 744, 786, 787, 1303 |
| StyI | CCWWGG | 1 cut(s) | 143 |
| TaaI | ACNGT | 3 cut(s) | 278, 771, 931 |
| TaiI | ACGT | 4 cut(s) | 18, 68, 556, 1020 |
| TaqI | TCGA | 4 cut(s) | 400, 1137, 1227, 1392 |
| TatI | WGTACW | 1 cut(s) | 1143 |
| TfiI | GAWTC | 1 cut(s) | 1070 |
| Tru1I | TTAA | 5 cut(s) | 206, 336, 798, 861, 1032 |
| Tru9I | TTAA | 5 cut(s) | 206, 336, 798, 861, 1032 |
| TscAI | CASTG | 3 cut(s) | 516, 776, 914 |
| TseFI | GTSAC | 1 cut(s) | 1021 |
| TseI | GCWGC | 4 cut(s) | 24, 42, 437, 953 |
| Tsp45I | GTSAC | 1 cut(s) | 1021 |
| TspDTI | ATGAA | 3 cut(s) | 132, 153, 707 |
| TspGWI | ACGGA | 1 cut(s) | 608 |
| TspMI | CCCGGG | 1 cut(s) | 787 |
| TspRI | CASTG | 3 cut(s) | 516, 776, 914 |
| Vha464I | CTTAAG | 1 cut(s) | 797 |
| VneI | GTGCAC | 1 cut(s) | 905 |
| XapI | RAATTY | 4 cut(s) | 216, 763, 1190, 1223 |
| XbaI | TCTAGA | 1 cut(s) | 1099 |
| XceI | RCATGY | 3 cut(s) | 262, 461, 960 |
| XhoI | CTCGAG | 1 cut(s) | 1391 |
| XmaI | CCCGGG | 1 cut(s) | 787 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1190 |
| XspI | CTAG | 2 cut(s) | 686, 1100 |
| Zsp2I | ATGCAT | 1 cut(s) | 459 |