Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 641 |
| AccI | GTMKAC | 1 cut(s) | 406 |
| AciI | CCGC | 1 cut(s) | 627 |
| AclWI | GGATC | 3 cut(s) | 95, 277, 290 |
| AcvI | CACGTG | 1 cut(s) | 135 |
| AfaI | GTAC | 2 cut(s) | 357, 710 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 83, 277, 333, 641 |
| AgsI | TTSAA | 3 cut(s) | 46, 295, 457 |
| AjnI | CCWGG | 1 cut(s) | 666 |
| AluBI | AGCT | 8 cut(s) | 10, 22, 181, 235, 243, 442, 530, 594 |
| AluI | AGCT | 8 cut(s) | 10, 22, 181, 235, 243, 442, 530, 594 |
| AlwI | GGATC | 3 cut(s) | 95, 277, 290 |
| AoxI | GGCC | 3 cut(s) | 305, 560, 713 |
| ApeKI | GCWGC | 5 cut(s) | 94, 265, 442, 549, 594 |
| AspS9I | GGNCC | 1 cut(s) | 560 |
| AsuC2I | CCSGG | 1 cut(s) | 78 |
| AsuHPI | GGTGA | 2 cut(s) | 424, 569 |
| BamHI | GGATCC | 1 cut(s) | 282 |
| BanII | GRGCYC | 1 cut(s) | 667 |
| BauI | CACGAG | 2 cut(s) | 236, 697 |
| BbrPI | CACGTG | 1 cut(s) | 135 |
| BbvI | GCAGC | 5 cut(s) | 81, 252, 429, 536, 581 |
| BccI | CCATC | 2 cut(s) | 344, 378 |
| BciT130I | CCWGG | 1 cut(s) | 668 |
| BcnI | CCSGG | 1 cut(s) | 78 |
| BfaI | CTAG | 4 cut(s) | 23, 380, 527, 673 |
| BfmI | CTRYAG | 1 cut(s) | 443 |
| BisI | GCNGC | 5 cut(s) | 95, 266, 443, 550, 595 |
| BlsI | GCNGC | 5 cut(s) | 96, 267, 444, 551, 596 |
| Bme1390I | CCNGG | 2 cut(s) | 78, 668 |
| BmgT120I | GGNCC | 1 cut(s) | 560 |
| BmiI | GGNNCC | 1 cut(s) | 284 |
| BmrFI | CCNGG | 2 cut(s) | 78, 668 |
| BmrI | ACTGGG | 2 cut(s) | 287, 651 |
| BmsI | GCATC | 2 cut(s) | 489, 688 |
| BmuI | ACTGGG | 2 cut(s) | 287, 651 |
| BpmI | CTGGAG | 1 cut(s) | 574 |
| BpuEI | CTTGAG | 1 cut(s) | 422 |
| BpuMI | CCSGG | 1 cut(s) | 78 |
| BsaAI | YACGTR | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 2 cut(s) | 535, 666 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 83, 277, 333, 641 |
| Bse1I | ACTGG | 2 cut(s) | 282, 657 |
| Bse3DI | GCAATG | 2 cut(s) | 261, 636 |
| BseBI | CCWGG | 1 cut(s) | 668 |
| BseDI | CCNNGG | 2 cut(s) | 535, 666 |
| BseGI | GGATG | 4 cut(s) | 355, 389, 495, 504 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 83, 277, 333, 641 |
| BseMI | GCAATG | 2 cut(s) | 261, 636 |
| BseNI | ACTGG | 2 cut(s) | 282, 657 |
| BseRI | GAGGAG | 1 cut(s) | 494 |
| BseXI | GCAGC | 5 cut(s) | 81, 252, 429, 536, 581 |
| BsgI | GTGCAG | 1 cut(s) | 251 |
| BshFI | GGCC | 3 cut(s) | 307, 562, 715 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 83, 277, 333, 641 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| BsnI | GGCC | 3 cut(s) | 307, 562, 715 |
| Bsp1286I | GDGCHC | 1 cut(s) | 667 |
| Bsp1407I | TGTACA | 1 cut(s) | 708 |
| Bsp143I | GATC | 2 cut(s) | 87, 282 |
| Bsp19I | CCATGG | 1 cut(s) | 535 |
| BspACI | CCGC | 1 cut(s) | 627 |
| BspANI | GGCC | 3 cut(s) | 307, 562, 715 |
| BspLI | GGNNCC | 1 cut(s) | 284 |
| BspMAI | CTGCAG | 1 cut(s) | 447 |
| BspPI | GGATC | 3 cut(s) | 95, 277, 290 |
| BsrDI | GCAATG | 2 cut(s) | 261, 636 |
| BsrGI | TGTACA | 1 cut(s) | 708 |
| BsrI | ACTGG | 2 cut(s) | 282, 657 |
| BssECI | CCNNGG | 2 cut(s) | 535, 666 |
| BssMI | GATC | 2 cut(s) | 87, 282 |
| BssNAI | GTATAC | 1 cut(s) | 407 |
| BssSI | CACGAG | 2 cut(s) | 236, 697 |
| BssT1I | CCWWGG | 1 cut(s) | 535 |
| Bst1107I | GTATAC | 1 cut(s) | 407 |
| Bst2BI | CACGAG | 2 cut(s) | 236, 697 |
| Bst2UI | CCWGG | 1 cut(s) | 668 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 651 |
| BstAUI | TGTACA | 1 cut(s) | 708 |
| BstBAI | YACGTR | 1 cut(s) | 135 |
| BstC8I | GCNNGC | 1 cut(s) | 305 |
| BstDEI | CTNAG | 2 cut(s) | 151, 332 |
| BstDSI | CCRYGG | 1 cut(s) | 535 |
| BstF5I | GGATG | 4 cut(s) | 355, 389, 495, 504 |
| BstKTI | GATC | 2 cut(s) | 90, 285 |
| BstMBI | GATC | 2 cut(s) | 87, 282 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 651 |
| BstNI | CCWGG | 1 cut(s) | 668 |
| BstNSI | RCATGY | 1 cut(s) | 110 |
| BstSCI | CCNGG | 2 cut(s) | 76, 666 |
| BstSFI | CTRYAG | 1 cut(s) | 443 |
| BstV1I | GCAGC | 5 cut(s) | 81, 252, 429, 536, 581 |
| BstX2I | RGATCY | 1 cut(s) | 282 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 384 |
| BstYI | RGATCY | 1 cut(s) | 282 |
| BstZ17I | GTATAC | 1 cut(s) | 407 |
| BsuRI | GGCC | 3 cut(s) | 307, 562, 715 |
| BtgI | CCRYGG | 1 cut(s) | 535 |
| BtsCI | GGATG | 4 cut(s) | 355, 389, 495, 504 |
| BtsIMutI | CAGTG | 1 cut(s) | 275 |
| Cac8I | GCNNGC | 1 cut(s) | 305 |
| Cfr13I | GGNCC | 1 cut(s) | 560 |
| Csp6I | GTAC | 2 cut(s) | 356, 709 |
| CviAII | CATG | 7 cut(s) | 107, 129, 174, 228, 536, 545, 692 |
| CviQI | GTAC | 2 cut(s) | 356, 709 |
| DdeI | CTNAG | 2 cut(s) | 151, 332 |
| DpnI | GATC | 2 cut(s) | 89, 284 |
| DpnII | GATC | 2 cut(s) | 87, 282 |
| Eco130I | CCWWGG | 1 cut(s) | 535 |
| Eco147I | AGGCCT | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 667 |
| Eco72I | CACGTG | 1 cut(s) | 135 |
| EcoRII | CCWGG | 1 cut(s) | 666 |
| EcoT14I | CCWWGG | 1 cut(s) | 535 |
| EcoT38I | GRGCYC | 1 cut(s) | 667 |
| ErhI | CCWWGG | 1 cut(s) | 535 |
| FaeI | CATG | 7 cut(s) | 110, 132, 177, 231, 539, 548, 695 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 7 cut(s) | 106, 128, 173, 227, 535, 544, 691 |
| FblI | GTMKAC | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 5 cut(s) | 95, 266, 443, 550, 595 |
| FokI | GGATG | 4 cut(s) | 362, 396, 502, 511 |
| FriOI | GRGCYC | 1 cut(s) | 667 |
| Fsp4HI | GCNGC | 5 cut(s) | 95, 266, 443, 550, 595 |
| FspBI | CTAG | 4 cut(s) | 23, 380, 527, 673 |
| GluI | GCNGC | 5 cut(s) | 95, 266, 443, 550, 595 |
| GsuI | CTGGAG | 1 cut(s) | 574 |
| HaeIII | GGCC | 3 cut(s) | 307, 562, 715 |
| HapII | CCGG | 1 cut(s) | 77 |
| Hin1II | CATG | 7 cut(s) | 110, 132, 177, 231, 539, 548, 695 |
| HinfI | GANTC | 1 cut(s) | 161 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 2 cut(s) | 424, 569 |
| Hpy166II | GTNNAC | 3 cut(s) | 275, 356, 407 |
| Hpy188I | TCNGA | 1 cut(s) | 57 |
| Hpy188III | TCNNGA | 1 cut(s) | 238 |
| Hpy8I | GTNNAC | 3 cut(s) | 275, 356, 407 |
| HpyAV | CCTTC | 7 cut(s) | 192, 379, 393, 519, 533, 534, 584 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 2 cut(s) | 116, 134 |
| HpyCH4V | TGCA | 4 cut(s) | 102, 132, 268, 445 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 651 |
| HpyF3I | CTNAG | 2 cut(s) | 151, 332 |
| HpySE526I | ACGT | 2 cut(s) | 116, 134 |
| Hsp92II | CATG | 7 cut(s) | 110, 132, 177, 231, 539, 548, 695 |
| Kzo9I | GATC | 2 cut(s) | 87, 282 |
| LmnI | GCTCC | 1 cut(s) | 507 |
| Lsp1109I | GCAGC | 5 cut(s) | 81, 252, 429, 536, 581 |
| LweI | GCATC | 2 cut(s) | 489, 688 |
| MaeI | CTAG | 4 cut(s) | 23, 380, 527, 673 |
| MaeII | ACGT | 2 cut(s) | 116, 134 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 2 cut(s) | 89, 284 |
| MboI | GATC | 2 cut(s) | 87, 282 |
| MboII | GAAGA | 2 cut(s) | 170, 364 |
| MflI | RGATCY | 1 cut(s) | 282 |
| MhlI | GDGCHC | 1 cut(s) | 667 |
| MluCI | AATT | 1 cut(s) | 143 |
| MnlI | CCTC | 5 cut(s) | 158, 515, 551, 590, 693 |
| MseI | TTAA | 2 cut(s) | 215, 478 |
| MslI | CAYNNNNRTG | 2 cut(s) | 133, 382 |
| MspI | CCGG | 1 cut(s) | 77 |
| MspR9I | CCNGG | 2 cut(s) | 78, 668 |
| MvaI | CCWGG | 1 cut(s) | 668 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 651 |
| NciI | CCSGG | 1 cut(s) | 78 |
| NcoI | CCATGG | 1 cut(s) | 535 |
| NdeII | GATC | 2 cut(s) | 87, 282 |
| NlaIII | CATG | 7 cut(s) | 110, 132, 177, 231, 539, 548, 695 |
| NlaIV | GGNNCC | 1 cut(s) | 284 |
| NspI | RCATGY | 1 cut(s) | 110 |
| PceI | AGGCCT | 1 cut(s) | 307 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 641 |
| PkrI | GCNGC | 5 cut(s) | 96, 267, 444, 551, 596 |
| PmaCI | CACGTG | 1 cut(s) | 135 |
| PmlI | CACGTG | 1 cut(s) | 135 |
| Ppu21I | YACGTR | 1 cut(s) | 135 |
| Psp6I | CCWGG | 1 cut(s) | 666 |
| PspCI | CACGTG | 1 cut(s) | 135 |
| PspGI | CCWGG | 1 cut(s) | 666 |
| PspN4I | GGNNCC | 1 cut(s) | 284 |
| PspPI | GGNCC | 1 cut(s) | 560 |
| PstI | CTGCAG | 1 cut(s) | 447 |
| PsuI | RGATCY | 1 cut(s) | 282 |
| RsaI | GTAC | 2 cut(s) | 357, 710 |
| RsaNI | GTAC | 2 cut(s) | 356, 709 |
| RseI | CAYNNNNRTG | 2 cut(s) | 133, 382 |
| SaqAI | TTAA | 2 cut(s) | 215, 478 |
| SatI | GCNGC | 5 cut(s) | 95, 266, 443, 550, 595 |
| Sau3AI | GATC | 2 cut(s) | 87, 282 |
| Sau96I | GGNCC | 1 cut(s) | 560 |
| ScrFI | CCNGG | 2 cut(s) | 78, 668 |
| SduI | GDGCHC | 1 cut(s) | 667 |
| SfaNI | GCATC | 2 cut(s) | 489, 688 |
| SfcI | CTRYAG | 1 cut(s) | 443 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 133, 382 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 1 cut(s) | 143 |
| SseBI | AGGCCT | 1 cut(s) | 307 |
| SsiI | CCGC | 1 cut(s) | 627 |
| SspMI | CTAG | 4 cut(s) | 23, 380, 527, 673 |
| StuI | AGGCCT | 1 cut(s) | 307 |
| StyD4I | CCNGG | 2 cut(s) | 76, 666 |
| StyI | CCWWGG | 1 cut(s) | 535 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaiI | ACGT | 2 cut(s) | 119, 137 |
| TaqI | TCGA | 1 cut(s) | 661 |
| TasI | AATT | 1 cut(s) | 143 |
| TatI | WGTACW | 2 cut(s) | 355, 708 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 2 cut(s) | 215, 478 |
| Tru9I | TTAA | 2 cut(s) | 215, 478 |
| TscAI | CASTG | 1 cut(s) | 282 |
| TseI | GCWGC | 5 cut(s) | 94, 265, 442, 549, 594 |
| TspDTI | ATGAA | 1 cut(s) | 412 |
| TspGWI | ACGGA | 1 cut(s) | 6 |
| TspRI | CASTG | 1 cut(s) | 282 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 641 |
| XceI | RCATGY | 1 cut(s) | 110 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 542 |
| XmiI | GTMKAC | 1 cut(s) | 406 |
| XspI | CTAG | 4 cut(s) | 23, 380, 527, 673 |