Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 156 - 278 | 5e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 647 |
| AccB1I | GGYRCC | 1 cut(s) | 49 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 318 |
| AciI | CCGC | 2 cut(s) | 441, 731 |
| AcsI | RAATTY | 3 cut(s) | 266, 760, 826 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 45, 46, 318 |
| AflIII | ACRYGT | 1 cut(s) | 589 |
| AgsI | TTSAA | 7 cut(s) | 266, 334, 377, 459, 596, 662, 686 |
| Alw21I | GWGCWC | 2 cut(s) | 168, 756 |
| Alw26I | GTCTC | 1 cut(s) | 519 |
| ApeKI | GCWGC | 6 cut(s) | 548, 614, 634, 637, 640, 697 |
| ApoI | RAATTY | 3 cut(s) | 266, 760, 826 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 1 cut(s) | 438 |
| AsuNHI | GCTAGC | 1 cut(s) | 443 |
| AvaII | GGWCC | 1 cut(s) | 438 |
| BaeGI | GKGCMC | 2 cut(s) | 52, 362 |
| BanI | GGYRCC | 1 cut(s) | 49 |
| BanII | GRGCYC | 1 cut(s) | 756 |
| BauI | CACGAG | 1 cut(s) | 99 |
| Bbv12I | GWGCWC | 2 cut(s) | 168, 756 |
| BbvI | GCAGC | 6 cut(s) | 560, 626, 646, 649, 652, 709 |
| BcoDI | GTCTC | 1 cut(s) | 519 |
| BfaI | CTAG | 8 cut(s) | 125, 212, 233, 426, 444, 521, 702, 737 |
| BfmI | CTRYAG | 1 cut(s) | 553 |
| BisI | GCNGC | 6 cut(s) | 549, 615, 635, 638, 641, 698 |
| BlpI | GCTNAGC | 1 cut(s) | 393 |
| BlsI | GCNGC | 6 cut(s) | 550, 616, 636, 639, 642, 699 |
| Bme18I | GGWCC | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 1 cut(s) | 438 |
| BmiI | GGNNCC | 1 cut(s) | 51 |
| BmrI | ACTGGG | 1 cut(s) | 55 |
| BmsI | GCATC | 3 cut(s) | 219, 871, 880 |
| BmtI | GCTAGC | 1 cut(s) | 447 |
| BmuI | ACTGGG | 1 cut(s) | 55 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 393 |
| BsaBI | GATNNNNATC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 1 cut(s) | 618 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 45, 46, 318 |
| Bse1I | ACTGG | 2 cut(s) | 50, 563 |
| Bse3DI | GCAATG | 1 cut(s) | 538 |
| Bse8I | GATNNNNATC | 1 cut(s) | 281 |
| BseDI | CCNNGG | 1 cut(s) | 618 |
| BseGI | GGATG | 1 cut(s) | 234 |
| BseJI | GATNNNNATC | 1 cut(s) | 281 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 45, 46, 318 |
| BseMI | GCAATG | 1 cut(s) | 538 |
| BseMII | CTCAG | 3 cut(s) | 407, 727, 834 |
| BseNI | ACTGG | 2 cut(s) | 50, 563 |
| BseRI | GAGGAG | 1 cut(s) | 519 |
| BseSI | GKGCMC | 2 cut(s) | 52, 362 |
| BseXI | GCAGC | 6 cut(s) | 560, 626, 646, 649, 652, 709 |
| BshNI | GGYRCC | 1 cut(s) | 49 |
| BsiHKAI | GWGCWC | 2 cut(s) | 168, 756 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 45, 46, 318 |
| BsmAI | GTCTC | 1 cut(s) | 519 |
| Bsp1286I | GDGCHC | 4 cut(s) | 52, 168, 362, 756 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 393 |
| BspACI | CCGC | 2 cut(s) | 441, 731 |
| BspCNI | CTCAG | 3 cut(s) | 406, 726, 835 |
| BspLI | GGNNCC | 1 cut(s) | 51 |
| BspOI | GCTAGC | 1 cut(s) | 447 |
| BspT107I | GGYRCC | 1 cut(s) | 49 |
| BsrDI | GCAATG | 1 cut(s) | 538 |
| BsrI | ACTGG | 2 cut(s) | 50, 563 |
| BssECI | CCNNGG | 1 cut(s) | 618 |
| BssSI | CACGAG | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 1 cut(s) | 618 |
| Bst2BI | CACGAG | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 1 cut(s) | 557 |
| Bst6I | CTCTTC | 2 cut(s) | 136, 372 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 4 cut(s) | 156, 393, 713, 843 |
| BstF5I | GGATG | 1 cut(s) | 234 |
| BstMAI | GTCTC | 1 cut(s) | 519 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 172, 640, 830, 868 |
| BstNSI | RCATGY | 2 cut(s) | 593, 728 |
| BstSFI | CTRYAG | 1 cut(s) | 553 |
| BstSLI | GKGCMC | 2 cut(s) | 52, 362 |
| BstV1I | GCAGC | 6 cut(s) | 560, 626, 646, 649, 652, 709 |
| BtsCI | GGATG | 1 cut(s) | 234 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| Cfr13I | GGNCC | 1 cut(s) | 438 |
| CseI | GACGC | 1 cut(s) | 777 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 887 |
| CviAII | CATG | 6 cut(s) | 23, 112, 313, 590, 721, 725 |
| DdeI | CTNAG | 4 cut(s) | 156, 393, 713, 843 |
| DraI | TTTAAA | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 2 cut(s) | 136, 372 |
| EarI | CTCTTC | 2 cut(s) | 136, 372 |
| Ecl136II | GAGCTC | 1 cut(s) | 754 |
| Eco130I | CCWWGG | 1 cut(s) | 618 |
| Eco24I | GRGCYC | 1 cut(s) | 756 |
| Eco32I | GATATC | 1 cut(s) | 691 |
| Eco47I | GGWCC | 1 cut(s) | 438 |
| Eco53kI | GAGCTC | 1 cut(s) | 754 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| EcoICRI | GAGCTC | 1 cut(s) | 754 |
| EcoRV | GATATC | 1 cut(s) | 691 |
| EcoT14I | CCWWGG | 1 cut(s) | 618 |
| EcoT22I | ATGCAT | 1 cut(s) | 726 |
| EcoT38I | GRGCYC | 1 cut(s) | 756 |
| ErhI | CCWWGG | 1 cut(s) | 618 |
| FaeI | CATG | 6 cut(s) | 26, 115, 316, 593, 724, 728 |
| FatI | CATG | 6 cut(s) | 22, 111, 312, 589, 720, 724 |
| Fnu4HI | GCNGC | 6 cut(s) | 549, 615, 635, 638, 641, 698 |
| FokI | GGATG | 1 cut(s) | 241 |
| FriOI | GRGCYC | 1 cut(s) | 756 |
| Fsp4HI | GCNGC | 6 cut(s) | 549, 615, 635, 638, 641, 698 |
| FspBI | CTAG | 8 cut(s) | 125, 212, 233, 426, 444, 521, 702, 737 |
| GluI | GCNGC | 6 cut(s) | 549, 615, 635, 638, 641, 698 |
| HgaI | GACGC | 1 cut(s) | 777 |
| Hin1II | CATG | 6 cut(s) | 26, 115, 316, 593, 724, 728 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 5 cut(s) | 7, 35, 662, 709, 839 |
| Hpy166II | GTNNAC | 2 cut(s) | 438, 560 |
| Hpy188I | TCNGA | 2 cut(s) | 667, 844 |
| Hpy188III | TCNNGA | 5 cut(s) | 686, 737, 745, 792, 854 |
| Hpy8I | GTNNAC | 2 cut(s) | 438, 560 |
| HpyAV | CCTTC | 1 cut(s) | 498 |
| HpyCH4III | ACNGT | 1 cut(s) | 557 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 31, 104, 531, 548, 724, 766, 893 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 172, 640, 830, 868 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 393, 713, 843 |
| Hsp92II | CATG | 6 cut(s) | 26, 115, 316, 593, 724, 728 |
| LmnI | GCTCC | 2 cut(s) | 180, 759 |
| Lsp1109I | GCAGC | 6 cut(s) | 560, 626, 646, 649, 652, 709 |
| LweI | GCATC | 3 cut(s) | 219, 871, 880 |
| MaeI | CTAG | 8 cut(s) | 125, 212, 233, 426, 444, 521, 702, 737 |
| MboII | GAAGA | 5 cut(s) | 61, 123, 310, 389, 430 |
| MhlI | GDGCHC | 4 cut(s) | 52, 168, 362, 756 |
| MluCI | AATT | 8 cut(s) | 266, 408, 606, 760, 777, 818, 826, 910 |
| MlyI | GAGTC | 1 cut(s) | 848 |
| MmeI | TCCRAC | 2 cut(s) | 490, 899 |
| MnlI | CCTC | 7 cut(s) | 21, 139, 145, 497, 506, 838, 882 |
| Mph1103I | ATGCAT | 1 cut(s) | 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 381 |
| MseI | TTAA | 4 cut(s) | 78, 219, 465, 780 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 172, 640, 830, 868 |
| NheI | GCTAGC | 1 cut(s) | 443 |
| NlaIII | CATG | 6 cut(s) | 26, 115, 316, 593, 724, 728 |
| NlaIV | GGNNCC | 1 cut(s) | 51 |
| NsiI | ATGCAT | 1 cut(s) | 726 |
| NspI | RCATGY | 2 cut(s) | 593, 728 |
| PciI | ACATGT | 1 cut(s) | 589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 381 |
| PfeI | GAWTC | 4 cut(s) | 7, 35, 662, 709 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 318 |
| PkrI | GCNGC | 6 cut(s) | 550, 616, 636, 639, 642, 699 |
| PleI | GAGTC | 1 cut(s) | 847 |
| PpsI | GAGTC | 1 cut(s) | 847 |
| PscI | ACATGT | 1 cut(s) | 589 |
| PsiI | TTATAA | 1 cut(s) | 647 |
| Psp124BI | GAGCTC | 1 cut(s) | 756 |
| PspN4I | GGNNCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 1 cut(s) | 438 |
| SacI | GAGCTC | 1 cut(s) | 756 |
| SaqAI | TTAA | 4 cut(s) | 78, 219, 465, 780 |
| SatI | GCNGC | 6 cut(s) | 549, 615, 635, 638, 641, 698 |
| Sau96I | GGNCC | 1 cut(s) | 438 |
| SchI | GAGTC | 1 cut(s) | 848 |
| SduI | GDGCHC | 4 cut(s) | 52, 168, 362, 756 |
| SfaNI | GCATC | 3 cut(s) | 219, 871, 880 |
| SfcI | CTRYAG | 1 cut(s) | 553 |
| SinI | GGWCC | 1 cut(s) | 438 |
| Sse9I | AATT | 8 cut(s) | 266, 408, 606, 760, 777, 818, 826, 910 |
| SsiI | CCGC | 2 cut(s) | 441, 731 |
| SspI | AATATT | 2 cut(s) | 187, 328 |
| SspMI | CTAG | 8 cut(s) | 125, 212, 233, 426, 444, 521, 702, 737 |
| SstI | GAGCTC | 1 cut(s) | 756 |
| StyI | CCWWGG | 1 cut(s) | 618 |
| TaaI | ACNGT | 1 cut(s) | 557 |
| TasI | AATT | 8 cut(s) | 266, 408, 606, 760, 777, 818, 826, 910 |
| TfiI | GAWTC | 4 cut(s) | 7, 35, 662, 709 |
| Tru1I | TTAA | 4 cut(s) | 78, 219, 465, 780 |
| Tru9I | TTAA | 4 cut(s) | 78, 219, 465, 780 |
| TseI | GCWGC | 6 cut(s) | 548, 614, 634, 637, 640, 697 |
| TspDTI | ATGAA | 2 cut(s) | 374, 557 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 1 cut(s) | 438 |
| XapI | RAATTY | 3 cut(s) | 266, 760, 826 |
| XbaI | TCTAGA | 1 cut(s) | 736 |
| XceI | RCATGY | 2 cut(s) | 593, 728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 381 |
| XspI | CTAG | 8 cut(s) | 125, 212, 233, 426, 444, 521, 702, 737 |
| Zsp2I | ATGCAT | 1 cut(s) | 726 |