Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 98, 782 |
| AccB1I | GGYRCC | 2 cut(s) | 98, 782 |
| AccI | GTMKAC | 1 cut(s) | 181 |
| AclWI | GGATC | 5 cut(s) | 507, 808, 821, 1097, 1110 |
| AcsI | RAATTY | 3 cut(s) | 563, 612, 676 |
| AcuI | CTGAAG | 2 cut(s) | 320, 960 |
| AdeI | CACNNNGTG | 1 cut(s) | 440 |
| AfaI | GTAC | 2 cut(s) | 100, 784 |
| AgsI | TTSAA | 2 cut(s) | 1012, 1149 |
| AjnI | CCWGG | 2 cut(s) | 515, 737 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 490, 522 |
| AlwI | GGATC | 5 cut(s) | 507, 808, 821, 1097, 1110 |
| AoxI | GGCC | 3 cut(s) | 14, 735, 740 |
| ApeKI | GCWGC | 3 cut(s) | 451, 454, 1205 |
| ApoI | RAATTY | 3 cut(s) | 563, 612, 676 |
| AseI | ATTAAT | 1 cut(s) | 891 |
| Asp718I | GGTACC | 2 cut(s) | 98, 782 |
| AspLEI | GCGC | 1 cut(s) | 958 |
| AspS9I | GGNCC | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 774, 807 |
| BamHI | GGATCC | 2 cut(s) | 813, 1102 |
| BanI | GGYRCC | 2 cut(s) | 98, 782 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| BbvI | GCAGC | 3 cut(s) | 463, 466, 1192 |
| BccI | CCATC | 1 cut(s) | 715 |
| BciT130I | CCWGG | 2 cut(s) | 517, 739 |
| BfaI | CTAG | 4 cut(s) | 153, 315, 1056, 1200 |
| BisI | GCNGC | 3 cut(s) | 452, 455, 1206 |
| BlsI | GCNGC | 3 cut(s) | 453, 456, 1207 |
| Bme1390I | CCNGG | 2 cut(s) | 517, 739 |
| BmgT120I | GGNCC | 1 cut(s) | 14 |
| BmiI | GGNNCC | 4 cut(s) | 100, 784, 815, 1104 |
| BmrFI | CCNGG | 2 cut(s) | 517, 739 |
| BmsI | GCATC | 1 cut(s) | 898 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 1 cut(s) | 628 |
| BpuEI | CTTGAG | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 5 cut(s) | 428, 516, 537, 633, 670 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 760, 790 |
| Bse1I | ACTGG | 1 cut(s) | 815 |
| BseBI | CCWGG | 2 cut(s) | 517, 739 |
| BseDI | CCNNGG | 5 cut(s) | 428, 516, 537, 633, 670 |
| BseGI | GGATG | 2 cut(s) | 811, 913 |
| BseMII | CTCAG | 1 cut(s) | 401 |
| BseNI | ACTGG | 1 cut(s) | 815 |
| BseRI | GAGGAG | 1 cut(s) | 1181 |
| BseXI | GCAGC | 3 cut(s) | 463, 466, 1192 |
| BsgI | GTGCAG | 1 cut(s) | 372 |
| BshFI | GGCC | 3 cut(s) | 16, 737, 742 |
| BshNI | GGYRCC | 2 cut(s) | 98, 782 |
| BslFI | GGGAC | 1 cut(s) | 809 |
| BsmFI | GGGAC | 1 cut(s) | 809 |
| BsmI | GAATGC | 1 cut(s) | 531 |
| BsnI | GGCC | 3 cut(s) | 16, 737, 742 |
| Bsp143I | GATC | 3 cut(s) | 512, 813, 1102 |
| Bsp19I | CCATGG | 1 cut(s) | 670 |
| BspANI | GGCC | 3 cut(s) | 16, 737, 742 |
| BspCNI | CTCAG | 1 cut(s) | 400 |
| BspLI | GGNNCC | 4 cut(s) | 100, 784, 815, 1104 |
| BspPI | GGATC | 5 cut(s) | 507, 808, 821, 1097, 1110 |
| BspT107I | GGYRCC | 2 cut(s) | 98, 782 |
| BsrI | ACTGG | 1 cut(s) | 815 |
| BssECI | CCNNGG | 5 cut(s) | 428, 516, 537, 633, 670 |
| BssMI | GATC | 3 cut(s) | 512, 813, 1102 |
| BssT1I | CCWWGG | 3 cut(s) | 537, 633, 670 |
| Bst2UI | CCWGG | 2 cut(s) | 517, 739 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 347, 387 |
| BstDSI | CCRYGG | 1 cut(s) | 670 |
| BstF5I | GGATG | 2 cut(s) | 811, 913 |
| BstHHI | GCGC | 1 cut(s) | 958 |
| BstKTI | GATC | 3 cut(s) | 515, 816, 1105 |
| BstMBI | GATC | 3 cut(s) | 512, 813, 1102 |
| BstNI | CCWGG | 2 cut(s) | 517, 739 |
| BstSCI | CCNGG | 2 cut(s) | 515, 737 |
| BstV1I | GCAGC | 3 cut(s) | 463, 466, 1192 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 3 cut(s) | 512, 813, 1102 |
| BstYI | RGATCY | 3 cut(s) | 512, 813, 1102 |
| BsuRI | GGCC | 3 cut(s) | 16, 737, 742 |
| BtgI | CCRYGG | 1 cut(s) | 670 |
| BtsCI | GGATG | 2 cut(s) | 811, 913 |
| BtsIMutI | CAGTG | 1 cut(s) | 227 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 958 |
| Cfr13I | GGNCC | 1 cut(s) | 14 |
| CseI | GACGC | 1 cut(s) | 518 |
| Csp6I | GTAC | 2 cut(s) | 99, 783 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1137, 1172 |
| CviAII | CATG | 7 cut(s) | 236, 263, 671, 694, 717, 953, 1002 |
| CviQI | GTAC | 2 cut(s) | 99, 783 |
| DdeI | CTNAG | 2 cut(s) | 347, 387 |
| DpnI | GATC | 3 cut(s) | 514, 815, 1104 |
| DpnII | GATC | 3 cut(s) | 512, 813, 1102 |
| DraI | TTTAAA | 2 cut(s) | 562, 652 |
| DraIII | CACNNNGTG | 1 cut(s) | 440 |
| Eco130I | CCWWGG | 3 cut(s) | 537, 633, 670 |
| Eco147I | AGGCCT | 1 cut(s) | 737 |
| Eco57I | CTGAAG | 2 cut(s) | 320, 960 |
| EcoRI | GAATTC | 1 cut(s) | 612 |
| EcoRII | CCWGG | 2 cut(s) | 515, 737 |
| EcoT14I | CCWWGG | 3 cut(s) | 537, 633, 670 |
| ErhI | CCWWGG | 3 cut(s) | 537, 633, 670 |
| FaeI | CATG | 7 cut(s) | 239, 266, 674, 697, 720, 956, 1005 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 86, 118, 354, 386, 744, 776 |
| FaqI | GGGAC | 1 cut(s) | 809 |
| FatI | CATG | 7 cut(s) | 235, 262, 670, 693, 716, 952, 1001 |
| FauNDI | CATATG | 1 cut(s) | 132 |
| FblI | GTMKAC | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 3 cut(s) | 452, 455, 1206 |
| FokI | GGATG | 2 cut(s) | 818, 920 |
| Fsp4HI | GCNGC | 3 cut(s) | 452, 455, 1206 |
| FspBI | CTAG | 4 cut(s) | 153, 315, 1056, 1200 |
| GlaI | GCGC | 1 cut(s) | 957 |
| GluI | GCNGC | 3 cut(s) | 452, 455, 1206 |
| GsuI | CTGGAG | 1 cut(s) | 628 |
| HaeIII | GGCC | 3 cut(s) | 16, 737, 742 |
| HgaI | GACGC | 1 cut(s) | 518 |
| HhaI | GCGC | 1 cut(s) | 958 |
| Hin1II | CATG | 7 cut(s) | 239, 266, 674, 697, 720, 956, 1005 |
| Hin6I | GCGC | 1 cut(s) | 956 |
| HinP1I | GCGC | 1 cut(s) | 956 |
| HincII | GTYRAC | 1 cut(s) | 977 |
| HindII | GTYRAC | 1 cut(s) | 977 |
| HindIII | AAGCTT | 3 cut(s) | 66, 87, 120 |
| HinfI | GANTC | 4 cut(s) | 309, 629, 854, 973 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy166II | GTNNAC | 3 cut(s) | 39, 182, 977 |
| Hpy188I | TCNGA | 5 cut(s) | 73, 300, 390, 628, 877 |
| Hpy188III | TCNNGA | 1 cut(s) | 817 |
| Hpy8I | GTNNAC | 3 cut(s) | 39, 182, 977 |
| HpyAV | CCTTC | 2 cut(s) | 295, 1117 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 6 cut(s) | 145, 353, 451, 575, 1001, 1208 |
| HpyF3I | CTNAG | 2 cut(s) | 347, 387 |
| Hsp92II | CATG | 7 cut(s) | 239, 266, 674, 697, 720, 956, 1005 |
| HspAI | GCGC | 1 cut(s) | 956 |
| KpnI | GGTACC | 2 cut(s) | 102, 786 |
| Kzo9I | GATC | 3 cut(s) | 512, 813, 1102 |
| Lsp1109I | GCAGC | 3 cut(s) | 463, 466, 1192 |
| LweI | GCATC | 1 cut(s) | 898 |
| MaeI | CTAG | 4 cut(s) | 153, 315, 1056, 1200 |
| MaeIII | GTNAC | 2 cut(s) | 423, 432 |
| MalI | GATC | 3 cut(s) | 514, 815, 1104 |
| MboI | GATC | 3 cut(s) | 512, 813, 1102 |
| MboII | GAAGA | 1 cut(s) | 524 |
| MflI | RGATCY | 3 cut(s) | 512, 813, 1102 |
| MluCI | AATT | 8 cut(s) | 400, 467, 563, 612, 622, 676, 771, 892 |
| MlyI | GAGTC | 3 cut(s) | 303, 623, 982 |
| MmeI | TCCRAC | 1 cut(s) | 311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 715 |
| MspR9I | CCNGG | 2 cut(s) | 517, 739 |
| Mva1269I | GAATGC | 1 cut(s) | 531 |
| MvaI | CCWGG | 2 cut(s) | 517, 739 |
| NcoI | CCATGG | 1 cut(s) | 670 |
| NdeI | CATATG | 1 cut(s) | 132 |
| NdeII | GATC | 3 cut(s) | 512, 813, 1102 |
| NlaIII | CATG | 7 cut(s) | 239, 266, 674, 697, 720, 956, 1005 |
| NlaIV | GGNNCC | 4 cut(s) | 100, 784, 815, 1104 |
| NmuCI | GTSAC | 1 cut(s) | 432 |
| PceI | AGGCCT | 1 cut(s) | 737 |
| PctI | GAATGC | 1 cut(s) | 531 |
| PfeI | GAWTC | 1 cut(s) | 854 |
| PkrI | GCNGC | 3 cut(s) | 453, 456, 1207 |
| PleI | GAGTC | 3 cut(s) | 303, 623, 981 |
| PpsI | GAGTC | 3 cut(s) | 303, 623, 981 |
| PshBI | ATTAAT | 1 cut(s) | 891 |
| Psp6I | CCWGG | 2 cut(s) | 515, 737 |
| PspGI | CCWGG | 2 cut(s) | 515, 737 |
| PspN4I | GGNNCC | 4 cut(s) | 100, 784, 815, 1104 |
| PspPI | GGNCC | 1 cut(s) | 14 |
| PsuI | RGATCY | 3 cut(s) | 512, 813, 1102 |
| RsaI | GTAC | 2 cut(s) | 100, 784 |
| RsaNI | GTAC | 2 cut(s) | 99, 783 |
| RseI | CAYNNNNRTG | 1 cut(s) | 715 |
| SatI | GCNGC | 3 cut(s) | 452, 455, 1206 |
| Sau3AI | GATC | 3 cut(s) | 512, 813, 1102 |
| Sau96I | GGNCC | 1 cut(s) | 14 |
| SchI | GAGTC | 3 cut(s) | 303, 623, 982 |
| ScrFI | CCNGG | 2 cut(s) | 517, 739 |
| SfaNI | GCATC | 1 cut(s) | 898 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 715 |
| SmlI | CTYRAG | 1 cut(s) | 642 |
| SmoI | CTYRAG | 1 cut(s) | 642 |
| Sse9I | AATT | 8 cut(s) | 400, 467, 563, 612, 622, 676, 771, 892 |
| SseBI | AGGCCT | 1 cut(s) | 737 |
| SspI | AATATT | 2 cut(s) | 796, 1078 |
| SspMI | CTAG | 4 cut(s) | 153, 315, 1056, 1200 |
| StuI | AGGCCT | 1 cut(s) | 737 |
| StyD4I | CCNGG | 2 cut(s) | 515, 737 |
| StyI | CCWWGG | 3 cut(s) | 537, 633, 670 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 857 |
| TaqII | GACCGA | 1 cut(s) | 420 |
| TasI | AATT | 8 cut(s) | 400, 467, 563, 612, 622, 676, 771, 892 |
| TfiI | GAWTC | 1 cut(s) | 854 |
| TscAI | CASTG | 1 cut(s) | 227 |
| TseFI | GTSAC | 1 cut(s) | 432 |
| TseI | GCWGC | 3 cut(s) | 451, 454, 1205 |
| Tsp45I | GTSAC | 1 cut(s) | 432 |
| TspDTI | ATGAA | 6 cut(s) | 14, 251, 425, 504, 705, 1077 |
| TspRI | CASTG | 1 cut(s) | 227 |
| VspI | ATTAAT | 1 cut(s) | 891 |
| XapI | RAATTY | 3 cut(s) | 563, 612, 676 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 714 |
| XmiI | GTMKAC | 1 cut(s) | 181 |
| XspI | CTAG | 4 cut(s) | 153, 315, 1056, 1200 |