Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 97 - 189 | 5.4e-08 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 241 |
| Acc16I | TGCGCA | 1 cut(s) | 78 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AcsI | RAATTY | 2 cut(s) | 177, 378 |
| AcyI | GRCGYC | 1 cut(s) | 238 |
| AfaI | GTAC | 3 cut(s) | 355, 501, 547 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 369 |
| AflIII | ACRYGT | 1 cut(s) | 472 |
| AgsI | TTSAA | 3 cut(s) | 272, 521, 573 |
| AleI | CACNNNNGTG | 2 cut(s) | 493, 532 |
| AluBI | AGCT | 5 cut(s) | 212, 286, 302, 389, 401 |
| AluI | AGCT | 5 cut(s) | 212, 286, 302, 389, 401 |
| Alw21I | GWGCWC | 1 cut(s) | 288 |
| Alw26I | GTCTC | 1 cut(s) | 259 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 187 |
| ApeKI | GCWGC | 1 cut(s) | 299 |
| ApoI | RAATTY | 2 cut(s) | 177, 378 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 288 |
| BauI | CACGAG | 2 cut(s) | 54, 555 |
| Bbv12I | GWGCWC | 1 cut(s) | 288 |
| BbvI | GCAGC | 1 cut(s) | 311 |
| BcoDI | GTCTC | 1 cut(s) | 259 |
| BfaI | CTAG | 2 cut(s) | 234, 242 |
| BisI | GCNGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 396 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| BsaHI | GRCGYC | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 369 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 311 |
| BsgI | GTGCAG | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 1 cut(s) | 288 |
| BslFI | GGGAC | 1 cut(s) | 169 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BsmAI | GTCTC | 1 cut(s) | 259 |
| BsmFI | GGGAC | 1 cut(s) | 169 |
| BsmI | GAATGC | 2 cut(s) | 70, 568 |
| Bsp1286I | GDGCHC | 1 cut(s) | 288 |
| BspLI | GGNNCC | 1 cut(s) | 396 |
| BssNI | GRCGYC | 1 cut(s) | 238 |
| BssSI | CACGAG | 2 cut(s) | 54, 555 |
| Bst2BI | CACGAG | 2 cut(s) | 54, 555 |
| Bst4CI | ACNGT | 3 cut(s) | 107, 147, 495 |
| Bst6I | CTCTTC | 1 cut(s) | 368 |
| BstACI | GRCGYC | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 3 cut(s) | 316, 387, 585 |
| BstDEI | CTNAG | 1 cut(s) | 588 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstMAI | GTCTC | 1 cut(s) | 259 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 45, 74 |
| BstNSI | RCATGY | 2 cut(s) | 314, 476 |
| BstV1I | GCAGC | 1 cut(s) | 311 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 3 cut(s) | 316, 387, 585 |
| CaiI | CAGNNNCTG | 1 cut(s) | 187 |
| CfoI | GCGC | 1 cut(s) | 79 |
| CseI | GACGC | 1 cut(s) | 134 |
| Csp6I | GTAC | 3 cut(s) | 354, 500, 546 |
| CviAII | CATG | 4 cut(s) | 248, 261, 311, 473 |
| CviJI | RGCY | 8 cut(s) | 25, 173, 212, 286, 302, 389, 401, 587 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 173, 212, 286, 302, 389, 401, 587 |
| CviQI | GTAC | 3 cut(s) | 354, 500, 546 |
| DdeI | CTNAG | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 1 cut(s) | 368 |
| EarI | CTCTTC | 1 cut(s) | 368 |
| Ecl136II | GAGCTC | 1 cut(s) | 286 |
| Eco24I | GRGCYC | 1 cut(s) | 288 |
| Eco53kI | GAGCTC | 1 cut(s) | 286 |
| EcoICRI | GAGCTC | 1 cut(s) | 286 |
| EcoT38I | GRGCYC | 1 cut(s) | 288 |
| FaeI | CATG | 4 cut(s) | 251, 264, 314, 476 |
| FaiI | YATR | 8 cut(s) | 72, 87, 215, 249, 262, 312, 392, 474 |
| FaqI | GGGAC | 1 cut(s) | 169 |
| FatI | CATG | 4 cut(s) | 247, 260, 310, 472 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 300 |
| FokI | GGATG | 1 cut(s) | 179 |
| FriOI | GRGCYC | 1 cut(s) | 288 |
| Fsp4HI | GCNGC | 1 cut(s) | 300 |
| FspBI | CTAG | 2 cut(s) | 234, 242 |
| FspI | TGCGCA | 1 cut(s) | 78 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GluI | GCNGC | 1 cut(s) | 300 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HgaI | GACGC | 1 cut(s) | 134 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin1I | GRCGYC | 1 cut(s) | 238 |
| Hin1II | CATG | 4 cut(s) | 251, 264, 314, 476 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 3 cut(s) | 358, 485, 521 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 500 |
| Hpy188I | TCNGA | 2 cut(s) | 93, 322 |
| Hpy188III | TCNNGA | 4 cut(s) | 234, 452, 482, 557 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 500 |
| Hpy99I | CGWCG | 1 cut(s) | 128 |
| HpyAV | CCTTC | 2 cut(s) | 15, 456 |
| HpyCH4III | ACNGT | 3 cut(s) | 107, 147, 495 |
| HpyCH4IV | ACGT | 2 cut(s) | 238, 419 |
| HpyCH4V | TGCA | 4 cut(s) | 247, 260, 507, 537 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 45, 74 |
| HpyF3I | CTNAG | 1 cut(s) | 588 |
| HpySE526I | ACGT | 2 cut(s) | 238, 419 |
| Hsp92I | GRCGYC | 1 cut(s) | 238 |
| Hsp92II | CATG | 4 cut(s) | 251, 264, 314, 476 |
| HspAI | GCGC | 1 cut(s) | 77 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| LpnPI | CCDG | 8 cut(s) | 101, 138, 200, 238, 411, 437, 523, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 311 |
| MaeI | CTAG | 2 cut(s) | 234, 242 |
| MaeII | ACGT | 2 cut(s) | 238, 419 |
| MaeIII | GTNAC | 4 cut(s) | 107, 431, 463, 577 |
| MboII | GAAGA | 4 cut(s) | 73, 385, 434, 436 |
| MhlI | GDGCHC | 1 cut(s) | 288 |
| MluCI | AATT | 3 cut(s) | 177, 365, 378 |
| MlyI | GAGTC | 2 cut(s) | 352, 479 |
| MmeI | TCCRAC | 1 cut(s) | 155 |
| MnlI | CCTC | 5 cut(s) | 149, 163, 196, 237, 507 |
| MseI | TTAA | 1 cut(s) | 192 |
| MslI | CAYNNNNRTG | 3 cut(s) | 493, 532, 573 |
| Mva1269I | GAATGC | 2 cut(s) | 70, 568 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 45, 74 |
| NlaIII | CATG | 4 cut(s) | 251, 264, 314, 476 |
| NlaIV | GGNNCC | 1 cut(s) | 396 |
| NmuCI | GTSAC | 3 cut(s) | 107, 431, 463 |
| NsbI | TGCGCA | 1 cut(s) | 78 |
| NspI | RCATGY | 2 cut(s) | 314, 476 |
| OliI | CACNNNNGTG | 2 cut(s) | 493, 532 |
| PciI | ACATGT | 1 cut(s) | 472 |
| PctI | GAATGC | 2 cut(s) | 70, 568 |
| PfeI | GAWTC | 1 cut(s) | 521 |
| PkrI | GCNGC | 1 cut(s) | 301 |
| PleI | GAGTC | 2 cut(s) | 352, 479 |
| PpsI | GAGTC | 2 cut(s) | 352, 479 |
| PscI | ACATGT | 1 cut(s) | 472 |
| Psp124BI | GAGCTC | 1 cut(s) | 288 |
| PspN4I | GGNNCC | 1 cut(s) | 396 |
| PstNI | CAGNNNCTG | 1 cut(s) | 187 |
| RsaI | GTAC | 3 cut(s) | 355, 501, 547 |
| RsaNI | GTAC | 3 cut(s) | 354, 500, 546 |
| RseI | CAYNNNNRTG | 3 cut(s) | 493, 532, 573 |
| SacI | GAGCTC | 1 cut(s) | 288 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| SatI | GCNGC | 1 cut(s) | 300 |
| SchI | GAGTC | 2 cut(s) | 352, 479 |
| SduI | GDGCHC | 1 cut(s) | 288 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 493, 532, 573 |
| Sse9I | AATT | 3 cut(s) | 177, 365, 378 |
| SspI | AATATT | 1 cut(s) | 439 |
| SspMI | CTAG | 2 cut(s) | 234, 242 |
| SstI | GAGCTC | 1 cut(s) | 288 |
| TaaI | ACNGT | 3 cut(s) | 107, 147, 495 |
| TaiI | ACGT | 2 cut(s) | 241, 422 |
| TaqI | TCGA | 1 cut(s) | 123 |
| TasI | AATT | 3 cut(s) | 177, 365, 378 |
| TatI | WGTACW | 1 cut(s) | 499 |
| TfiI | GAWTC | 1 cut(s) | 521 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TseFI | GTSAC | 3 cut(s) | 107, 431, 463 |
| TseI | GCWGC | 1 cut(s) | 299 |
| Tsp45I | GTSAC | 3 cut(s) | 107, 431, 463 |
| XapI | RAATTY | 2 cut(s) | 177, 378 |
| XbaI | TCTAGA | 1 cut(s) | 233 |
| XceI | RCATGY | 2 cut(s) | 314, 476 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 234, 242 |
| ZraI | GACGTC | 1 cut(s) | 239 |