Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 102 |
| Acc16I | TGCGCA | 1 cut(s) | 447 |
| AccI | GTMKAC | 1 cut(s) | 822 |
| AclWI | GGATC | 1 cut(s) | 552 |
| AcoI | YGGCCR | 2 cut(s) | 69, 467 |
| AcsI | RAATTY | 3 cut(s) | 161, 504, 892 |
| AcuI | CTGAAG | 2 cut(s) | 594, 870 |
| AfaI | GTAC | 2 cut(s) | 234, 960 |
| AgsI | TTSAA | 4 cut(s) | 85, 166, 485, 712 |
| AjnI | CCWGG | 1 cut(s) | 961 |
| AluBI | AGCT | 7 cut(s) | 111, 242, 384, 443, 481, 854, 873 |
| AluI | AGCT | 7 cut(s) | 111, 242, 384, 443, 481, 854, 873 |
| Alw26I | GTCTC | 1 cut(s) | 988 |
| AlwI | GGATC | 1 cut(s) | 552 |
| AoxI | GGCC | 4 cut(s) | 69, 95, 467, 964 |
| ApeKI | GCWGC | 3 cut(s) | 443, 478, 953 |
| ApoI | RAATTY | 3 cut(s) | 161, 504, 892 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 910, 942 |
| AspLEI | GCGC | 1 cut(s) | 448 |
| AspS9I | GGNCC | 3 cut(s) | 407, 923, 965 |
| AsuC2I | CCSGG | 2 cut(s) | 94, 861 |
| AsuHPI | GGTGA | 2 cut(s) | 605, 757 |
| AsuNHI | GCTAGC | 1 cut(s) | 380 |
| AvaII | GGWCC | 2 cut(s) | 407, 923 |
| BbvI | GCAGC | 3 cut(s) | 430, 490, 940 |
| BccI | CCATC | 2 cut(s) | 656, 758 |
| BceAI | ACGGC | 1 cut(s) | 454 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4, 38 |
| BciT130I | CCWGG | 1 cut(s) | 963 |
| BcnI | CCSGG | 2 cut(s) | 94, 861 |
| BcoDI | GTCTC | 1 cut(s) | 988 |
| BfaI | CTAG | 1 cut(s) | 381 |
| BfmI | CTRYAG | 2 cut(s) | 114, 954 |
| BisI | GCNGC | 3 cut(s) | 444, 479, 954 |
| BlsI | GCNGC | 3 cut(s) | 445, 480, 955 |
| BmcAI | AGTACT | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 3 cut(s) | 94, 861, 963 |
| Bme18I | GGWCC | 2 cut(s) | 407, 923 |
| BmgT120I | GGNCC | 3 cut(s) | 407, 923, 965 |
| BmiI | GGNNCC | 1 cut(s) | 967 |
| BmrFI | CCNGG | 3 cut(s) | 94, 861, 963 |
| BmsI | GCATC | 4 cut(s) | 444, 586, 648, 714 |
| BmtI | GCTAGC | 1 cut(s) | 384 |
| BpmI | CTGGAG | 1 cut(s) | 645 |
| BpuEI | CTTGAG | 2 cut(s) | 270, 569 |
| BpuMI | CCSGG | 2 cut(s) | 94, 861 |
| BsaI | GGTCTC | 1 cut(s) | 988 |
| BsaJI | CCNNGG | 1 cut(s) | 859 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| Bse1I | ACTGG | 1 cut(s) | 925 |
| Bse3DI | GCAATG | 1 cut(s) | 995 |
| BseBI | CCWGG | 1 cut(s) | 963 |
| BseDI | CCNNGG | 1 cut(s) | 859 |
| BseGI | GGATG | 3 cut(s) | 376, 582, 793 |
| BseMI | GCAATG | 1 cut(s) | 995 |
| BseMII | CTCAG | 3 cut(s) | 74, 189, 924 |
| BseNI | ACTGG | 1 cut(s) | 925 |
| BseRI | GAGGAG | 1 cut(s) | 701 |
| BseXI | GCAGC | 3 cut(s) | 430, 490, 940 |
| BshFI | GGCC | 4 cut(s) | 71, 97, 469, 966 |
| BsiSI | CCGG | 4 cut(s) | 68, 94, 830, 861 |
| BslFI | GGGAC | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 988 |
| BsmFI | GGGAC | 1 cut(s) | 383 |
| BsmI | GAATGC | 1 cut(s) | 556 |
| BsnI | GGCC | 4 cut(s) | 71, 97, 469, 966 |
| Bso31I | GGTCTC | 1 cut(s) | 988 |
| Bsp143I | GATC | 1 cut(s) | 544 |
| BspANI | GGCC | 4 cut(s) | 71, 97, 469, 966 |
| BspCNI | CTCAG | 3 cut(s) | 73, 188, 925 |
| BspLI | GGNNCC | 1 cut(s) | 967 |
| BspMAI | CTGCAG | 1 cut(s) | 958 |
| BspOI | GCTAGC | 1 cut(s) | 384 |
| BspPI | GGATC | 1 cut(s) | 552 |
| BspTNI | GGTCTC | 1 cut(s) | 988 |
| BsrDI | GCAATG | 1 cut(s) | 995 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BsrI | ACTGG | 1 cut(s) | 925 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssECI | CCNNGG | 1 cut(s) | 859 |
| BssMI | GATC | 1 cut(s) | 544 |
| BssNAI | GTATAC | 1 cut(s) | 823 |
| Bst1107I | GTATAC | 1 cut(s) | 823 |
| Bst2UI | CCWGG | 1 cut(s) | 963 |
| Bst4CI | ACNGT | 2 cut(s) | 681, 815 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 6 cut(s) | 23, 69, 382, 386, 637, 888 |
| BstDEI | CTNAG | 3 cut(s) | 60, 175, 933 |
| BstF5I | GGATG | 3 cut(s) | 376, 582, 793 |
| BstHHI | GCGC | 1 cut(s) | 448 |
| BstKTI | GATC | 1 cut(s) | 547 |
| BstMAI | GTCTC | 1 cut(s) | 988 |
| BstMBI | GATC | 1 cut(s) | 544 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 142, 454, 475, 765, 839 |
| BstNI | CCWGG | 1 cut(s) | 963 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSCI | CCNGG | 3 cut(s) | 92, 859, 961 |
| BstSFI | CTRYAG | 2 cut(s) | 114, 954 |
| BstV1I | GCAGC | 3 cut(s) | 430, 490, 940 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BstZ17I | GTATAC | 1 cut(s) | 823 |
| BsuRI | GGCC | 4 cut(s) | 71, 97, 469, 966 |
| BtsCI | GGATG | 3 cut(s) | 376, 582, 793 |
| BtsI | GCAGTG | 1 cut(s) | 279 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 768 |
| Cac8I | GCNNGC | 6 cut(s) | 23, 69, 382, 386, 637, 888 |
| CfoI | GCGC | 1 cut(s) | 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 3 cut(s) | 407, 923, 965 |
| Csp6I | GTAC | 2 cut(s) | 233, 959 |
| CviAII | CATG | 2 cut(s) | 563, 999 |
| CviQI | GTAC | 2 cut(s) | 233, 959 |
| DdeI | CTNAG | 3 cut(s) | 60, 175, 933 |
| DpnI | GATC | 1 cut(s) | 546 |
| DpnII | GATC | 1 cut(s) | 544 |
| EaeI | YGGCCR | 2 cut(s) | 69, 467 |
| Eco31I | GGTCTC | 1 cut(s) | 988 |
| Eco47I | GGWCC | 2 cut(s) | 407, 923 |
| Eco57I | CTGAAG | 2 cut(s) | 594, 870 |
| EcoO109I | RGGNCCY | 2 cut(s) | 407, 965 |
| EcoRII | CCWGG | 1 cut(s) | 961 |
| EcoT22I | ATGCAT | 1 cut(s) | 601 |
| FaeI | CATG | 2 cut(s) | 566, 1002 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 723, 755 |
| FaqI | GGGAC | 1 cut(s) | 383 |
| FatI | CATG | 2 cut(s) | 562, 998 |
| FblI | GTMKAC | 1 cut(s) | 822 |
| Fnu4HI | GCNGC | 3 cut(s) | 444, 479, 954 |
| FokI | GGATG | 3 cut(s) | 383, 569, 780 |
| Fsp4HI | GCNGC | 3 cut(s) | 444, 479, 954 |
| FspBI | CTAG | 1 cut(s) | 381 |
| FspI | TGCGCA | 1 cut(s) | 447 |
| GlaI | GCGC | 1 cut(s) | 447 |
| GluI | GCNGC | 3 cut(s) | 444, 479, 954 |
| GsuI | CTGGAG | 1 cut(s) | 645 |
| HaeIII | GGCC | 4 cut(s) | 71, 97, 469, 966 |
| HapII | CCGG | 4 cut(s) | 68, 94, 830, 861 |
| HhaI | GCGC | 1 cut(s) | 448 |
| Hin1II | CATG | 2 cut(s) | 566, 1002 |
| Hin6I | GCGC | 1 cut(s) | 446 |
| HinP1I | GCGC | 1 cut(s) | 446 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HindIII | AAGCTT | 1 cut(s) | 852 |
| HinfI | GANTC | 5 cut(s) | 122, 154, 308, 511, 715 |
| HpaII | CCGG | 4 cut(s) | 68, 94, 830, 861 |
| HphI | GGTGA | 2 cut(s) | 605, 757 |
| Hpy166II | GTNNAC | 5 cut(s) | 208, 277, 649, 823, 939 |
| Hpy188I | TCNGA | 3 cut(s) | 544, 661, 850 |
| Hpy188III | TCNNGA | 4 cut(s) | 166, 305, 548, 624 |
| Hpy8I | GTNNAC | 5 cut(s) | 208, 277, 649, 823, 939 |
| HpyAV | CCTTC | 3 cut(s) | 398, 479, 618 |
| HpyCH4III | ACNGT | 2 cut(s) | 681, 815 |
| HpyCH4V | TGCA | 7 cut(s) | 145, 185, 325, 478, 599, 902, 956 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 142, 454, 475, 765, 839 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 175, 933 |
| Hsp92II | CATG | 2 cut(s) | 566, 1002 |
| HspAI | GCGC | 1 cut(s) | 446 |
| KroI | GCCGGC | 1 cut(s) | 67 |
| KroNI | GCCGGC | 1 cut(s) | 69 |
| Kzo9I | GATC | 1 cut(s) | 544 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| Lsp1109I | GCAGC | 3 cut(s) | 430, 490, 940 |
| LweI | GCATC | 4 cut(s) | 444, 586, 648, 714 |
| MaeI | CTAG | 1 cut(s) | 381 |
| MaeIII | GTNAC | 2 cut(s) | 254, 691 |
| MalI | GATC | 1 cut(s) | 546 |
| MboI | GATC | 1 cut(s) | 544 |
| MboII | GAAGA | 5 cut(s) | 227, 230, 233, 724, 889 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MluCI | AATT | 9 cut(s) | 16, 161, 264, 358, 504, 707, 748, 892, 904 |
| MlyI | GAGTC | 2 cut(s) | 131, 302 |
| MmeI | TCCRAC | 4 cut(s) | 74, 522, 663, 684 |
| MnlI | CCTC | 6 cut(s) | 136, 399, 428, 620, 679, 682 |
| Mph1103I | ATGCAT | 1 cut(s) | 601 |
| MroNI | GCCGGC | 1 cut(s) | 67 |
| MseI | TTAA | 1 cut(s) | 579 |
| MslI | CAYNNNNRTG | 3 cut(s) | 561, 567, 591 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MspI | CCGG | 4 cut(s) | 68, 94, 830, 861 |
| MspR9I | CCNGG | 3 cut(s) | 94, 861, 963 |
| Mva1269I | GAATGC | 1 cut(s) | 556 |
| MvaI | CCWGG | 1 cut(s) | 963 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 142, 454, 475, 765, 839 |
| NaeI | GCCGGC | 1 cut(s) | 69 |
| NciI | CCSGG | 2 cut(s) | 94, 861 |
| NdeII | GATC | 1 cut(s) | 544 |
| NgoMIV | GCCGGC | 1 cut(s) | 67 |
| NheI | GCTAGC | 1 cut(s) | 380 |
| NlaIII | CATG | 2 cut(s) | 566, 1002 |
| NlaIV | GGNNCC | 1 cut(s) | 967 |
| NmuCI | GTSAC | 1 cut(s) | 691 |
| NsbI | TGCGCA | 1 cut(s) | 447 |
| NsiI | ATGCAT | 1 cut(s) | 601 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PctI | GAATGC | 1 cut(s) | 556 |
| PdiI | GCCGGC | 1 cut(s) | 69 |
| PfeI | GAWTC | 3 cut(s) | 154, 511, 715 |
| PkrI | GCNGC | 3 cut(s) | 445, 480, 955 |
| PleI | GAGTC | 2 cut(s) | 130, 302 |
| PpsI | GAGTC | 2 cut(s) | 130, 302 |
| PpuMI | RGGWCCY | 1 cut(s) | 407 |
| PsiI | TTATAA | 1 cut(s) | 102 |
| Psp5II | RGGWCCY | 1 cut(s) | 407 |
| Psp6I | CCWGG | 1 cut(s) | 961 |
| PspGI | CCWGG | 1 cut(s) | 961 |
| PspN4I | GGNNCC | 1 cut(s) | 967 |
| PspPI | GGNCC | 3 cut(s) | 407, 923, 965 |
| PspPPI | RGGWCCY | 1 cut(s) | 407 |
| PstI | CTGCAG | 1 cut(s) | 958 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| PvuII | CAGCTG | 1 cut(s) | 443 |
| RsaI | GTAC | 2 cut(s) | 234, 960 |
| RsaNI | GTAC | 2 cut(s) | 233, 959 |
| RseI | CAYNNNNRTG | 3 cut(s) | 561, 567, 591 |
| SaqAI | TTAA | 1 cut(s) | 579 |
| SatI | GCNGC | 3 cut(s) | 444, 479, 954 |
| Sau3AI | GATC | 1 cut(s) | 544 |
| Sau96I | GGNCC | 3 cut(s) | 407, 923, 965 |
| ScaI | AGTACT | 1 cut(s) | 234 |
| SchI | GAGTC | 2 cut(s) | 131, 302 |
| ScrFI | CCNGG | 3 cut(s) | 94, 861, 963 |
| SfaNI | GCATC | 4 cut(s) | 444, 586, 648, 714 |
| SfcI | CTRYAG | 2 cut(s) | 114, 954 |
| SinI | GGWCC | 2 cut(s) | 407, 923 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 561, 567, 591 |
| SmlI | CTYRAG | 2 cut(s) | 285, 548 |
| SmoI | CTYRAG | 2 cut(s) | 285, 548 |
| Sse9I | AATT | 9 cut(s) | 16, 161, 264, 358, 504, 707, 748, 892, 904 |
| SspI | AATATT | 1 cut(s) | 530 |
| SspMI | CTAG | 1 cut(s) | 381 |
| StyD4I | CCNGG | 3 cut(s) | 92, 859, 961 |
| TaaI | ACNGT | 2 cut(s) | 681, 815 |
| TaqI | TCGA | 1 cut(s) | 459 |
| TasI | AATT | 9 cut(s) | 16, 161, 264, 358, 504, 707, 748, 892, 904 |
| TatI | WGTACW | 1 cut(s) | 232 |
| TfiI | GAWTC | 3 cut(s) | 154, 511, 715 |
| Tru1I | TTAA | 1 cut(s) | 579 |
| Tru9I | TTAA | 1 cut(s) | 579 |
| TscAI | CASTG | 2 cut(s) | 286, 775 |
| TseFI | GTSAC | 1 cut(s) | 691 |
| TseI | GCWGC | 3 cut(s) | 443, 478, 953 |
| Tsp45I | GTSAC | 1 cut(s) | 691 |
| TspDTI | ATGAA | 4 cut(s) | 68, 276, 516, 782 |
| TspRI | CASTG | 2 cut(s) | 286, 775 |
| VpaK11BI | GGWCC | 2 cut(s) | 407, 923 |
| XapI | RAATTY | 3 cut(s) | 161, 504, 892 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 424 |
| XmiI | GTMKAC | 1 cut(s) | 822 |
| XspI | CTAG | 1 cut(s) | 381 |
| ZrmI | AGTACT | 1 cut(s) | 234 |
| Zsp2I | ATGCAT | 1 cut(s) | 601 |