Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 910 |
| AccBSI | CCGCTC | 1 cut(s) | 467 |
| AciI | CCGC | 3 cut(s) | 393, 465, 718 |
| AclWI | GGATC | 5 cut(s) | 174, 321, 387, 481, 486 |
| AcoI | YGGCCR | 1 cut(s) | 783 |
| AcsI | RAATTY | 1 cut(s) | 684 |
| AcuI | CTGAAG | 1 cut(s) | 956 |
| AdeI | CACNNNGTG | 1 cut(s) | 910 |
| AfaI | GTAC | 1 cut(s) | 438 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 870, 910 |
| AflII | CTTAAG | 1 cut(s) | 653 |
| AgsI | TTSAA | 7 cut(s) | 14, 211, 575, 692, 775, 820, 979 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 755, 787 |
| AluBI | AGCT | 4 cut(s) | 19, 72, 106, 834 |
| AluI | AGCT | 4 cut(s) | 19, 72, 106, 834 |
| Alw26I | GTCTC | 1 cut(s) | 403 |
| AlwI | GGATC | 5 cut(s) | 174, 321, 387, 481, 486 |
| AoxI | GGCC | 2 cut(s) | 649, 783 |
| ApeKI | GCWGC | 3 cut(s) | 113, 229, 298 |
| ApoI | RAATTY | 1 cut(s) | 684 |
| AseI | ATTAAT | 1 cut(s) | 291 |
| AspLEI | GCGC | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 649 |
| AsuC2I | CCSGG | 2 cut(s) | 401, 865 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 841 |
| BalI | TGGCCA | 1 cut(s) | 785 |
| BbvI | GCAGC | 3 cut(s) | 100, 216, 285 |
| BccI | CCATC | 4 cut(s) | 550, 623, 723, 938 |
| BcnI | CCSGG | 2 cut(s) | 401, 865 |
| BcoDI | GTCTC | 1 cut(s) | 403 |
| BfaI | CTAG | 3 cut(s) | 128, 308, 930 |
| BfmI | CTRYAG | 1 cut(s) | 612 |
| BfrI | CTTAAG | 1 cut(s) | 653 |
| BisI | GCNGC | 4 cut(s) | 114, 230, 299, 719 |
| BlpI | GCTNAGC | 1 cut(s) | 735 |
| BlsI | GCNGC | 4 cut(s) | 115, 231, 300, 720 |
| Bme1390I | CCNGG | 2 cut(s) | 401, 865 |
| BmgT120I | GGNCC | 1 cut(s) | 649 |
| BmiI | GGNNCC | 1 cut(s) | 584 |
| BmrFI | CCNGG | 2 cut(s) | 401, 865 |
| BmrI | ACTGGG | 1 cut(s) | 916 |
| BmsI | GCATC | 2 cut(s) | 538, 680 |
| BmuI | ACTGGG | 1 cut(s) | 916 |
| BpmI | CTGGAG | 1 cut(s) | 1027 |
| Bpu10I | CCTNAGC | 1 cut(s) | 468 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 735 |
| BpuMI | CCSGG | 2 cut(s) | 401, 865 |
| BsaJI | CCNNGG | 2 cut(s) | 586, 786 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 92, 122, 755, 785 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 870, 910 |
| Bse118I | RCCGGY | 1 cut(s) | 579 |
| Bse1I | ACTGG | 1 cut(s) | 911 |
| Bse3DI | GCAATG | 1 cut(s) | 798 |
| BseDI | CCNNGG | 2 cut(s) | 586, 786 |
| BseGI | GGATG | 5 cut(s) | 553, 634, 664, 734, 949 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 870, 910 |
| BseMI | GCAATG | 1 cut(s) | 798 |
| BseMII | CTCAG | 3 cut(s) | 168, 482, 726 |
| BseNI | ACTGG | 1 cut(s) | 911 |
| BseXI | GCAGC | 3 cut(s) | 100, 216, 285 |
| BseYI | CCCAGC | 1 cut(s) | 952 |
| BsgI | GTGCAG | 1 cut(s) | 906 |
| BshFI | GGCC | 2 cut(s) | 651, 785 |
| BsiSI | CCGG | 3 cut(s) | 401, 580, 865 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 870, 910 |
| BsmAI | GTCTC | 1 cut(s) | 403 |
| BsnI | GGCC | 2 cut(s) | 651, 785 |
| Bsp143I | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 735 |
| Bsp19I | CCATGG | 1 cut(s) | 786 |
| BspACI | CCGC | 3 cut(s) | 393, 465, 718 |
| BspANI | GGCC | 2 cut(s) | 651, 785 |
| BspCNI | CTCAG | 4 cut(s) | 169, 481, 727, 1080 |
| BspLI | GGNNCC | 1 cut(s) | 584 |
| BspPI | GGATC | 5 cut(s) | 174, 321, 387, 481, 486 |
| BspTI | CTTAAG | 1 cut(s) | 653 |
| BsrBI | CCGCTC | 1 cut(s) | 467 |
| BsrDI | GCAATG | 1 cut(s) | 798 |
| BsrFI | RCCGGY | 1 cut(s) | 579 |
| BsrI | ACTGG | 1 cut(s) | 911 |
| BssAI | RCCGGY | 1 cut(s) | 579 |
| BssECI | CCNNGG | 2 cut(s) | 586, 786 |
| BssMI | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| BssT1I | CCWWGG | 1 cut(s) | 786 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| BstAFI | CTTAAG | 1 cut(s) | 653 |
| BstDEI | CTNAG | 4 cut(s) | 177, 468, 735, 1067 |
| BstDSI | CCRYGG | 1 cut(s) | 786 |
| BstF5I | GGATG | 5 cut(s) | 553, 634, 664, 734, 949 |
| BstHHI | GCGC | 1 cut(s) | 113 |
| BstKTI | GATC | 7 cut(s) | 150, 169, 316, 382, 476, 481, 892 |
| BstMAI | GTCTC | 1 cut(s) | 403 |
| BstMBI | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 304, 992 |
| BstSCI | CCNGG | 2 cut(s) | 399, 863 |
| BstSFI | CTRYAG | 1 cut(s) | 612 |
| BstV1I | GCAGC | 3 cut(s) | 100, 216, 285 |
| BstX2I | RGATCY | 2 cut(s) | 166, 379 |
| BstYI | RGATCY | 2 cut(s) | 166, 379 |
| BsuRI | GGCC | 2 cut(s) | 651, 785 |
| BtgI | CCRYGG | 1 cut(s) | 786 |
| BtsCI | GGATG | 5 cut(s) | 553, 634, 664, 734, 949 |
| BtsIMutI | CAGTG | 1 cut(s) | 904 |
| CfoI | GCGC | 1 cut(s) | 113 |
| Cfr10I | RCCGGY | 1 cut(s) | 579 |
| Cfr13I | GGNCC | 1 cut(s) | 649 |
| Csp6I | GTAC | 1 cut(s) | 437 |
| CviAII | CATG | 9 cut(s) | 302, 388, 440, 490, 553, 621, 787, 803, 808 |
| CviQI | GTAC | 1 cut(s) | 437 |
| DdeI | CTNAG | 4 cut(s) | 177, 468, 735, 1067 |
| DpnI | GATC | 7 cut(s) | 149, 168, 315, 381, 475, 480, 891 |
| DpnII | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| DraIII | CACNNNGTG | 1 cut(s) | 910 |
| EaeI | YGGCCR | 1 cut(s) | 783 |
| Eco130I | CCWWGG | 1 cut(s) | 786 |
| Eco57I | CTGAAG | 1 cut(s) | 956 |
| EcoT14I | CCWWGG | 1 cut(s) | 786 |
| ErhI | CCWWGG | 1 cut(s) | 786 |
| FaeI | CATG | 9 cut(s) | 305, 391, 443, 493, 556, 624, 790, 806, 811 |
| FatI | CATG | 9 cut(s) | 301, 387, 439, 489, 552, 620, 786, 802, 807 |
| FauNDI | CATATG | 2 cut(s) | 343, 520 |
| Fnu4HI | GCNGC | 4 cut(s) | 114, 230, 299, 719 |
| FokI | GGATG | 5 cut(s) | 560, 641, 671, 741, 956 |
| Fsp4HI | GCNGC | 4 cut(s) | 114, 230, 299, 719 |
| FspBI | CTAG | 3 cut(s) | 128, 308, 930 |
| GlaI | GCGC | 1 cut(s) | 112 |
| GluI | GCNGC | 4 cut(s) | 114, 230, 299, 719 |
| GsaI | CCCAGC | 1 cut(s) | 956 |
| GsuI | CTGGAG | 1 cut(s) | 1027 |
| HaeIII | GGCC | 2 cut(s) | 651, 785 |
| HapII | CCGG | 3 cut(s) | 401, 580, 865 |
| HhaI | GCGC | 1 cut(s) | 113 |
| Hin1II | CATG | 9 cut(s) | 305, 391, 443, 493, 556, 624, 790, 806, 811 |
| Hin6I | GCGC | 1 cut(s) | 111 |
| HinP1I | GCGC | 1 cut(s) | 111 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 1 cut(s) | 692 |
| HpaII | CCGG | 3 cut(s) | 401, 580, 865 |
| HphI | GGTGA | 2 cut(s) | 251, 841 |
| Hpy166II | GTNNAC | 2 cut(s) | 82, 896 |
| Hpy188I | TCNGA | 3 cut(s) | 478, 587, 705 |
| Hpy188III | TCNNGA | 4 cut(s) | 216, 377, 775, 962 |
| Hpy8I | GTNNAC | 2 cut(s) | 82, 896 |
| HpyAV | CCTTC | 4 cut(s) | 28, 230, 754, 934 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 232, 301, 671, 840, 887 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 304, 992 |
| HpyF3I | CTNAG | 4 cut(s) | 177, 468, 735, 1067 |
| Hsp92II | CATG | 9 cut(s) | 305, 391, 443, 493, 556, 624, 790, 806, 811 |
| HspAI | GCGC | 1 cut(s) | 111 |
| Kzo9I | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| Lsp1109I | GCAGC | 3 cut(s) | 100, 216, 285 |
| LweI | GCATC | 2 cut(s) | 538, 680 |
| MaeI | CTAG | 3 cut(s) | 128, 308, 930 |
| MaeIII | GTNAC | 2 cut(s) | 180, 607 |
| MalI | GATC | 7 cut(s) | 149, 168, 315, 381, 475, 480, 891 |
| MbiI | CCGCTC | 1 cut(s) | 467 |
| MboI | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| MboII | GAAGA | 5 cut(s) | 297, 889, 931, 949, 1068 |
| MflI | RGATCY | 2 cut(s) | 166, 379 |
| MlsI | TGGCCA | 1 cut(s) | 785 |
| MluNI | TGGCCA | 1 cut(s) | 785 |
| MmeI | TCCRAC | 1 cut(s) | 572 |
| Mox20I | TGGCCA | 1 cut(s) | 785 |
| MscI | TGGCCA | 1 cut(s) | 785 |
| MseI | TTAA | 5 cut(s) | 21, 291, 351, 654, 1052 |
| MslI | CAYNNNNRTG | 2 cut(s) | 494, 791 |
| Msp20I | TGGCCA | 1 cut(s) | 785 |
| MspCI | CTTAAG | 1 cut(s) | 653 |
| MspI | CCGG | 3 cut(s) | 401, 580, 865 |
| MspR9I | CCNGG | 2 cut(s) | 401, 865 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 304, 992 |
| NciI | CCSGG | 2 cut(s) | 401, 865 |
| NcoI | CCATGG | 1 cut(s) | 786 |
| NdeI | CATATG | 2 cut(s) | 343, 520 |
| NdeII | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| NlaIII | CATG | 9 cut(s) | 305, 391, 443, 493, 556, 624, 790, 806, 811 |
| NlaIV | GGNNCC | 1 cut(s) | 584 |
| PfeI | GAWTC | 1 cut(s) | 692 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 910 |
| PkrI | GCNGC | 4 cut(s) | 115, 231, 300, 720 |
| PshBI | ATTAAT | 1 cut(s) | 291 |
| PspFI | CCCAGC | 1 cut(s) | 952 |
| PspN4I | GGNNCC | 1 cut(s) | 584 |
| PspPI | GGNCC | 1 cut(s) | 649 |
| PsuI | RGATCY | 2 cut(s) | 166, 379 |
| RsaI | GTAC | 1 cut(s) | 438 |
| RsaNI | GTAC | 1 cut(s) | 437 |
| RseI | CAYNNNNRTG | 2 cut(s) | 494, 791 |
| SaqAI | TTAA | 5 cut(s) | 21, 291, 351, 654, 1052 |
| SatI | GCNGC | 4 cut(s) | 114, 230, 299, 719 |
| Sau3AI | GATC | 7 cut(s) | 147, 166, 313, 379, 473, 478, 889 |
| Sau96I | GGNCC | 1 cut(s) | 649 |
| ScrFI | CCNGG | 2 cut(s) | 401, 865 |
| SfaNI | GCATC | 2 cut(s) | 538, 680 |
| SfcI | CTRYAG | 1 cut(s) | 612 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 494, 791 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| SsiI | CCGC | 3 cut(s) | 393, 465, 718 |
| SspI | AATATT | 3 cut(s) | 200, 427, 644 |
| SspMI | CTAG | 3 cut(s) | 128, 308, 930 |
| StyD4I | CCNGG | 2 cut(s) | 399, 863 |
| StyI | CCWWGG | 1 cut(s) | 786 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaqI | TCGA | 2 cut(s) | 121, 159 |
| TauI | GCSGC | 1 cut(s) | 721 |
| TfiI | GAWTC | 1 cut(s) | 692 |
| Tru1I | TTAA | 5 cut(s) | 21, 291, 351, 654, 1052 |
| Tru9I | TTAA | 5 cut(s) | 21, 291, 351, 654, 1052 |
| TscAI | CASTG | 1 cut(s) | 911 |
| TseI | GCWGC | 3 cut(s) | 113, 229, 298 |
| TspDTI | ATGAA | 4 cut(s) | 251, 376, 512, 609 |
| TspGWI | ACGGA | 1 cut(s) | 741 |
| TspRI | CASTG | 1 cut(s) | 911 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 910 |
| Vha464I | CTTAAG | 1 cut(s) | 653 |
| VspI | ATTAAT | 1 cut(s) | 291 |
| XapI | RAATTY | 1 cut(s) | 684 |
| XspI | CTAG | 3 cut(s) | 128, 308, 930 |