Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 112, 509 |
| AclI | AACGTT | 1 cut(s) | 77 |
| AclWI | GGATC | 2 cut(s) | 213, 746 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AcyI | GRCGYC | 1 cut(s) | 303 |
| AfaI | GTAC | 1 cut(s) | 702 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 118, 194, 634 |
| AflIII | ACRYGT | 2 cut(s) | 271, 518 |
| AgsI | TTSAA | 4 cut(s) | 131, 144, 541, 799 |
| AjnI | CCWGG | 2 cut(s) | 556, 673 |
| AluBI | AGCT | 4 cut(s) | 219, 353, 469, 651 |
| AluI | AGCT | 4 cut(s) | 219, 353, 469, 651 |
| Alw21I | GWGCWC | 1 cut(s) | 56 |
| Alw26I | GTCTC | 1 cut(s) | 780 |
| AlwI | GGATC | 2 cut(s) | 213, 746 |
| Ama87I | CYCGRG | 2 cut(s) | 91, 226 |
| AoxI | GGCC | 2 cut(s) | 240, 319 |
| ApeKI | GCWGC | 2 cut(s) | 101, 631 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 504 |
| AspA2I | CCTAGG | 1 cut(s) | 544 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuC2I | CCSGG | 1 cut(s) | 636 |
| AvaI | CYCGRG | 2 cut(s) | 91, 226 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| AvrII | CCTAGG | 1 cut(s) | 544 |
| BaeGI | GKGCMC | 1 cut(s) | 177 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 507, 540 |
| BalI | TGGCCA | 1 cut(s) | 321 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 390, 422 |
| Bbv12I | GWGCWC | 1 cut(s) | 56 |
| BbvI | GCAGC | 2 cut(s) | 88, 618 |
| BccI | CCATC | 3 cut(s) | 340, 675, 691 |
| BciT130I | CCWGG | 2 cut(s) | 558, 675 |
| BciVI | GTATCC | 1 cut(s) | 508 |
| BcnI | CCSGG | 1 cut(s) | 636 |
| BcoDI | GTCTC | 1 cut(s) | 780 |
| BfaI | CTAG | 1 cut(s) | 545 |
| BfmI | CTRYAG | 1 cut(s) | 692 |
| BfuI | GTATCC | 1 cut(s) | 508 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 640 |
| BisI | GCNGC | 2 cut(s) | 102, 632 |
| BlnI | CCTAGG | 1 cut(s) | 544 |
| BlpI | GCTNAGC | 1 cut(s) | 50 |
| BlsI | GCNGC | 2 cut(s) | 103, 633 |
| Bme1390I | CCNGG | 3 cut(s) | 558, 636, 675 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmeT110I | CYCGRG | 2 cut(s) | 91, 226 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 3 cut(s) | 558, 636, 675 |
| BmsI | GCATC | 2 cut(s) | 679, 794 |
| Bpu10I | CCTNAGC | 1 cut(s) | 331 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BpuMI | CCSGG | 1 cut(s) | 636 |
| BsaHI | GRCGYC | 1 cut(s) | 303 |
| BsaI | GGTCTC | 1 cut(s) | 780 |
| BsaJI | CCNNGG | 2 cut(s) | 17, 544 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 279, 309 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 118, 194, 634 |
| Bse1I | ACTGG | 1 cut(s) | 612 |
| Bse3DI | GCAATG | 2 cut(s) | 322, 342 |
| BseBI | CCWGG | 2 cut(s) | 558, 675 |
| BseDI | CCNNGG | 2 cut(s) | 17, 544 |
| BseGI | GGATG | 2 cut(s) | 670, 686 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 118, 194, 634 |
| BseMI | GCAATG | 2 cut(s) | 322, 342 |
| BseMII | CTCAG | 1 cut(s) | 41 |
| BseNI | ACTGG | 1 cut(s) | 612 |
| BseRI | GAGGAG | 1 cut(s) | 177 |
| BseSI | GKGCMC | 1 cut(s) | 177 |
| BseXI | GCAGC | 2 cut(s) | 88, 618 |
| BshFI | GGCC | 2 cut(s) | 242, 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 2 cut(s) | 91, 226 |
| BsiSI | CCGG | 2 cut(s) | 105, 635 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 118, 194, 634 |
| BsmAI | GTCTC | 1 cut(s) | 780 |
| BsnI | GGCC | 2 cut(s) | 242, 321 |
| Bso31I | GGTCTC | 1 cut(s) | 780 |
| BsoBI | CYCGRG | 2 cut(s) | 91, 226 |
| Bsp1286I | GDGCHC | 3 cut(s) | 39, 56, 177 |
| Bsp143I | GATC | 3 cut(s) | 205, 738, 767 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 50 |
| BspACI | CCGC | 2 cut(s) | 112, 509 |
| BspANI | GGCC | 2 cut(s) | 242, 321 |
| BspCNI | CTCAG | 1 cut(s) | 42 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspMAI | CTGCAG | 1 cut(s) | 696 |
| BspPI | GGATC | 2 cut(s) | 213, 746 |
| BspQI | GCTCTTC | 1 cut(s) | 476 |
| BspTNI | GGTCTC | 1 cut(s) | 780 |
| BsrDI | GCAATG | 2 cut(s) | 322, 342 |
| BsrI | ACTGG | 1 cut(s) | 612 |
| BssECI | CCNNGG | 2 cut(s) | 17, 544 |
| BssMI | GATC | 3 cut(s) | 205, 738, 767 |
| BssNI | GRCGYC | 1 cut(s) | 303 |
| BssT1I | CCWWGG | 1 cut(s) | 544 |
| Bst2UI | CCWGG | 2 cut(s) | 558, 675 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 488 |
| Bst6I | CTCTTC | 2 cut(s) | 426, 476 |
| BstACI | GRCGYC | 1 cut(s) | 303 |
| BstDEI | CTNAG | 3 cut(s) | 50, 331, 652 |
| BstDSI | CCRYGG | 1 cut(s) | 17 |
| BstF5I | GGATG | 2 cut(s) | 670, 686 |
| BstKTI | GATC | 3 cut(s) | 208, 741, 770 |
| BstMAI | GTCTC | 1 cut(s) | 780 |
| BstMBI | GATC | 3 cut(s) | 205, 738, 767 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 120, 640 |
| BstNI | CCWGG | 2 cut(s) | 558, 675 |
| BstNSI | RCATGY | 1 cut(s) | 522 |
| BstSCI | CCNGG | 3 cut(s) | 556, 634, 673 |
| BstSFI | CTRYAG | 1 cut(s) | 692 |
| BstSLI | GKGCMC | 1 cut(s) | 177 |
| BstV1I | GCAGC | 2 cut(s) | 88, 618 |
| BstX2I | RGATCY | 2 cut(s) | 205, 738 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 157 |
| BstYI | RGATCY | 2 cut(s) | 205, 738 |
| BsuI | GTATCC | 1 cut(s) | 508 |
| BsuRI | GGCC | 2 cut(s) | 242, 321 |
| BtgI | CCRYGG | 1 cut(s) | 17 |
| BtsCI | GGATG | 2 cut(s) | 670, 686 |
| BtsIMutI | CAGTG | 3 cut(s) | 579, 596, 605 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| CseI | GACGC | 1 cut(s) | 311 |
| Csp6I | GTAC | 1 cut(s) | 701 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 232, 267 |
| CviAII | CATG | 4 cut(s) | 30, 323, 519, 771 |
| CviQI | GTAC | 1 cut(s) | 701 |
| DdeI | CTNAG | 3 cut(s) | 50, 331, 652 |
| DpnI | GATC | 3 cut(s) | 207, 740, 769 |
| DpnII | GATC | 3 cut(s) | 205, 738, 767 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 2 cut(s) | 426, 476 |
| EarI | CTCTTC | 2 cut(s) | 426, 476 |
| Eco130I | CCWWGG | 1 cut(s) | 544 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco31I | GGTCTC | 1 cut(s) | 780 |
| Eco32I | GATATC | 1 cut(s) | 625 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco88I | CYCGRG | 2 cut(s) | 91, 226 |
| EcoRII | CCWGG | 2 cut(s) | 556, 673 |
| EcoRV | GATATC | 1 cut(s) | 625 |
| EcoT14I | CCWWGG | 1 cut(s) | 544 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 544 |
| FaeI | CATG | 4 cut(s) | 33, 326, 522, 774 |
| FaiI | YATR | 6 cut(s) | 31, 324, 381, 520, 663, 772 |
| FatI | CATG | 4 cut(s) | 29, 322, 518, 770 |
| Fnu4HI | GCNGC | 2 cut(s) | 102, 632 |
| FokI | GGATG | 2 cut(s) | 657, 693 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| Fsp4HI | GCNGC | 2 cut(s) | 102, 632 |
| FspBI | CTAG | 1 cut(s) | 545 |
| GluI | GCNGC | 2 cut(s) | 102, 632 |
| HaeIII | GGCC | 2 cut(s) | 242, 321 |
| HapII | CCGG | 2 cut(s) | 105, 635 |
| HgaI | GACGC | 1 cut(s) | 311 |
| Hin1I | GRCGYC | 1 cut(s) | 303 |
| Hin1II | CATG | 4 cut(s) | 33, 326, 522, 774 |
| HinfI | GANTC | 3 cut(s) | 359, 434, 584 |
| HpaII | CCGG | 2 cut(s) | 105, 635 |
| Hpy188I | TCNGA | 1 cut(s) | 83 |
| Hpy188III | TCNNGA | 4 cut(s) | 195, 343, 395, 588 |
| HpyAV | CCTTC | 2 cut(s) | 150, 232 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 488 |
| HpyCH4IV | ACGT | 2 cut(s) | 77, 271 |
| HpyCH4V | TGCA | 2 cut(s) | 617, 694 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 120, 640 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 331, 652 |
| HpySE526I | ACGT | 2 cut(s) | 77, 271 |
| Hsp92I | GRCGYC | 1 cut(s) | 303 |
| Hsp92II | CATG | 4 cut(s) | 33, 326, 522, 774 |
| Kzo9I | GATC | 3 cut(s) | 205, 738, 767 |
| LguI | GCTCTTC | 1 cut(s) | 476 |
| LmnI | GCTCC | 1 cut(s) | 42 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 618 |
| LweI | GCATC | 2 cut(s) | 679, 794 |
| MaeI | CTAG | 1 cut(s) | 545 |
| MaeII | ACGT | 2 cut(s) | 77, 271 |
| MaeIII | GTNAC | 1 cut(s) | 482 |
| MalI | GATC | 3 cut(s) | 207, 740, 769 |
| MboI | GATC | 3 cut(s) | 205, 738, 767 |
| MboII | GAAGA | 7 cut(s) | 247, 411, 443, 463, 497, 545, 698 |
| MflI | RGATCY | 2 cut(s) | 205, 738 |
| MhlI | GDGCHC | 3 cut(s) | 39, 56, 177 |
| MlsI | TGGCCA | 1 cut(s) | 321 |
| MluCI | AATT | 1 cut(s) | 297 |
| MluNI | TGGCCA | 1 cut(s) | 321 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MmeI | TCCRAC | 2 cut(s) | 98, 174 |
| MnlI | CCTC | 6 cut(s) | 15, 51, 81, 196, 198, 632 |
| Mox20I | TGGCCA | 1 cut(s) | 321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 504 |
| MscI | TGGCCA | 1 cut(s) | 321 |
| MseI | TTAA | 1 cut(s) | 465 |
| MslI | CAYNNNNRTG | 1 cut(s) | 675 |
| Msp20I | TGGCCA | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 1 cut(s) | 114 |
| MspI | CCGG | 2 cut(s) | 105, 635 |
| MspR9I | CCNGG | 3 cut(s) | 558, 636, 675 |
| MvaI | CCWGG | 2 cut(s) | 558, 675 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 120, 640 |
| NciI | CCSGG | 1 cut(s) | 636 |
| NdeII | GATC | 3 cut(s) | 205, 738, 767 |
| NlaIII | CATG | 4 cut(s) | 33, 326, 522, 774 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| NmuCI | GTSAC | 1 cut(s) | 482 |
| NspI | RCATGY | 1 cut(s) | 522 |
| PciI | ACATGT | 1 cut(s) | 518 |
| PciSI | GCTCTTC | 1 cut(s) | 476 |
| PdmI | GAANNNNTTC | 1 cut(s) | 504 |
| PfeI | GAWTC | 2 cut(s) | 359, 584 |
| PkrI | GCNGC | 2 cut(s) | 103, 633 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| PscI | ACATGT | 1 cut(s) | 518 |
| Psp1406I | AACGTT | 1 cut(s) | 77 |
| Psp6I | CCWGG | 2 cut(s) | 556, 673 |
| PspGI | CCWGG | 2 cut(s) | 556, 673 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PstI | CTGCAG | 1 cut(s) | 696 |
| PsuI | RGATCY | 2 cut(s) | 205, 738 |
| RsaI | GTAC | 1 cut(s) | 702 |
| RsaNI | GTAC | 1 cut(s) | 701 |
| RseI | CAYNNNNRTG | 1 cut(s) | 675 |
| SapI | GCTCTTC | 1 cut(s) | 476 |
| SaqAI | TTAA | 1 cut(s) | 465 |
| SatI | GCNGC | 2 cut(s) | 102, 632 |
| Sau3AI | GATC | 3 cut(s) | 205, 738, 767 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| SchI | GAGTC | 1 cut(s) | 443 |
| ScrFI | CCNGG | 3 cut(s) | 558, 636, 675 |
| SduI | GDGCHC | 3 cut(s) | 39, 56, 177 |
| SfaNI | GCATC | 2 cut(s) | 679, 794 |
| SfcI | CTRYAG | 1 cut(s) | 692 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 675 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| Sse9I | AATT | 1 cut(s) | 297 |
| SsiI | CCGC | 2 cut(s) | 112, 509 |
| SspMI | CTAG | 1 cut(s) | 545 |
| StyD4I | CCNGG | 3 cut(s) | 556, 634, 673 |
| StyI | CCWWGG | 1 cut(s) | 544 |
| TaaI | ACNGT | 2 cut(s) | 295, 488 |
| TaiI | ACGT | 2 cut(s) | 80, 274 |
| TaqII | GACCGA | 1 cut(s) | 427 |
| TasI | AATT | 1 cut(s) | 297 |
| TfiI | GAWTC | 2 cut(s) | 359, 584 |
| Tru1I | TTAA | 1 cut(s) | 465 |
| Tru9I | TTAA | 1 cut(s) | 465 |
| TscAI | CASTG | 3 cut(s) | 586, 603, 612 |
| TseFI | GTSAC | 1 cut(s) | 482 |
| TseI | GCWGC | 2 cut(s) | 101, 631 |
| Tsp45I | GTSAC | 1 cut(s) | 482 |
| TspDTI | ATGAA | 1 cut(s) | 372 |
| TspGWI | ACGGA | 3 cut(s) | 34, 73, 715 |
| TspRI | CASTG | 3 cut(s) | 586, 603, 612 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XceI | RCATGY | 1 cut(s) | 522 |
| XmaJI | CCTAGG | 1 cut(s) | 544 |
| XmnI | GAANNNNTTC | 1 cut(s) | 504 |
| XspI | CTAG | 1 cut(s) | 545 |