Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 128 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AccII | CGCG | 1 cut(s) | 162 |
| AccIII | TCCGGA | 1 cut(s) | 48 |
| AcoI | YGGCCR | 2 cut(s) | 357, 400 |
| AcsI | RAATTY | 1 cut(s) | 333 |
| AcvI | CACGTG | 1 cut(s) | 104 |
| AfaI | GTAC | 3 cut(s) | 60, 76, 263 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 409 |
| AflIII | ACRYGT | 3 cut(s) | 42, 101, 103 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| Alw21I | GWGCWC | 1 cut(s) | 353 |
| Alw44I | GTGCAC | 1 cut(s) | 349 |
| Aor13HI | TCCGGA | 1 cut(s) | 48 |
| AoxI | GGCC | 2 cut(s) | 357, 400 |
| ApaLI | GTGCAC | 1 cut(s) | 349 |
| ApeKI | GCWGC | 1 cut(s) | 281 |
| ApoI | RAATTY | 1 cut(s) | 333 |
| AspLEI | GCGC | 1 cut(s) | 129 |
| AsuC2I | CCSGG | 1 cut(s) | 65 |
| AsuHPI | GGTGA | 1 cut(s) | 192 |
| BaeGI | GKGCMC | 2 cut(s) | 118, 353 |
| BalI | TGGCCA | 2 cut(s) | 359, 402 |
| BbrPI | CACGTG | 1 cut(s) | 104 |
| Bbv12I | GWGCWC | 1 cut(s) | 353 |
| BbvI | GCAGC | 1 cut(s) | 293 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcnI | CCSGG | 1 cut(s) | 65 |
| BfaI | CTAG | 2 cut(s) | 111, 240 |
| BisI | GCNGC | 1 cut(s) | 282 |
| BlsI | GCNGC | 1 cut(s) | 283 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 65 |
| BmrFI | CCNGG | 2 cut(s) | 14, 65 |
| BmrI | ACTGGG | 1 cut(s) | 241 |
| BmuI | ACTGGG | 1 cut(s) | 241 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| BpuMI | CCSGG | 1 cut(s) | 65 |
| BsaAI | YACGTR | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 1 cut(s) | 354 |
| BsaWI | WCCGGW | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 409 |
| Bse1I | ACTGG | 3 cut(s) | 56, 236, 269 |
| Bse3DI | GCAATG | 1 cut(s) | 414 |
| BseAI | TCCGGA | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BseMI | GCAATG | 1 cut(s) | 414 |
| BseNI | ACTGG | 3 cut(s) | 56, 236, 269 |
| BseRI | GAGGAG | 2 cut(s) | 187, 206 |
| BseSI | GKGCMC | 2 cut(s) | 118, 353 |
| BseXI | GCAGC | 1 cut(s) | 293 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| Bsh1236I | CGCG | 1 cut(s) | 162 |
| BshFI | GGCC | 2 cut(s) | 359, 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 353 |
| BsiSI | CCGG | 2 cut(s) | 49, 64 |
| BslFI | GGGAC | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BsmFI | GGGAC | 1 cut(s) | 242 |
| BsnI | GGCC | 2 cut(s) | 359, 402 |
| Bsp1286I | GDGCHC | 2 cut(s) | 118, 353 |
| Bsp13I | TCCGGA | 1 cut(s) | 48 |
| Bsp143I | GATC | 1 cut(s) | 192 |
| Bsp68I | TCGCGA | 1 cut(s) | 162 |
| BspANI | GGCC | 2 cut(s) | 359, 402 |
| BspEI | TCCGGA | 1 cut(s) | 48 |
| BspFNI | CGCG | 1 cut(s) | 162 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BsrDI | GCAATG | 1 cut(s) | 414 |
| BsrI | ACTGG | 3 cut(s) | 56, 236, 269 |
| BssECI | CCNNGG | 1 cut(s) | 354 |
| BssMI | GATC | 1 cut(s) | 192 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| BstBAI | YACGTR | 1 cut(s) | 104 |
| BstFNI | CGCG | 1 cut(s) | 162 |
| BstHHI | GCGC | 1 cut(s) | 129 |
| BstKTI | GATC | 1 cut(s) | 195 |
| BstMBI | GATC | 1 cut(s) | 192 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstNSI | RCATGY | 2 cut(s) | 46, 445 |
| BstSCI | CCNGG | 2 cut(s) | 12, 63 |
| BstSLI | GKGCMC | 2 cut(s) | 118, 353 |
| BstUI | CGCG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 1 cut(s) | 293 |
| BsuRI | GGCC | 2 cut(s) | 359, 402 |
| BtuMI | TCGCGA | 1 cut(s) | 162 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 129 |
| Csp6I | GTAC | 3 cut(s) | 59, 75, 262 |
| CviAII | CATG | 6 cut(s) | 43, 140, 387, 404, 425, 442 |
| CviJI | RGCY | 4 cut(s) | 68, 208, 359, 402 |
| CviKI_1 | RGCY | 4 cut(s) | 68, 208, 359, 402 |
| CviQI | GTAC | 3 cut(s) | 59, 75, 262 |
| DpnI | GATC | 1 cut(s) | 194 |
| DpnII | GATC | 1 cut(s) | 192 |
| EaeI | YGGCCR | 2 cut(s) | 357, 400 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco72I | CACGTG | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 333 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| FaeI | CATG | 6 cut(s) | 46, 143, 390, 407, 428, 445 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 338, 370 |
| FaqI | GGGAC | 1 cut(s) | 242 |
| FatI | CATG | 6 cut(s) | 42, 139, 386, 403, 424, 441 |
| FauNDI | CATATG | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 1 cut(s) | 282 |
| FspBI | CTAG | 2 cut(s) | 111, 240 |
| FspI | TGCGCA | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 128 |
| GluI | GCNGC | 1 cut(s) | 282 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| HaeIII | GGCC | 2 cut(s) | 359, 402 |
| HapII | CCGG | 2 cut(s) | 49, 64 |
| HhaI | GCGC | 1 cut(s) | 129 |
| Hin1II | CATG | 6 cut(s) | 46, 143, 390, 407, 428, 445 |
| Hin6I | GCGC | 1 cut(s) | 127 |
| HinP1I | GCGC | 1 cut(s) | 127 |
| HinfI | GANTC | 5 cut(s) | 17, 52, 136, 157, 213 |
| HpaII | CCGG | 2 cut(s) | 49, 64 |
| HphI | GGTGA | 1 cut(s) | 192 |
| Hpy166II | GTNNAC | 4 cut(s) | 61, 77, 262, 351 |
| Hpy188III | TCNNGA | 3 cut(s) | 49, 140, 161 |
| Hpy8I | GTNNAC | 4 cut(s) | 61, 77, 262, 351 |
| Hpy99I | CGWCG | 2 cut(s) | 9, 12 |
| HpyAV | CCTTC | 2 cut(s) | 358, 410 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 4 cut(s) | 351, 407, 424, 441 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 6 cut(s) | 46, 143, 390, 407, 428, 445 |
| HspAI | GCGC | 1 cut(s) | 127 |
| Kpn2I | TCCGGA | 1 cut(s) | 48 |
| Kzo9I | GATC | 1 cut(s) | 192 |
| LpnPI | CCDG | 9 cut(s) | 26, 62, 69, 77, 165, 217, 218, 250, 289 |
| Lsp1109I | GCAGC | 1 cut(s) | 293 |
| MaeI | CTAG | 2 cut(s) | 111, 240 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 1 cut(s) | 194 |
| MboI | GATC | 1 cut(s) | 192 |
| MboII | GAAGA | 1 cut(s) | 425 |
| MfeI | CAATTG | 1 cut(s) | 180 |
| MhlI | GDGCHC | 2 cut(s) | 118, 353 |
| MlsI | TGGCCA | 2 cut(s) | 359, 402 |
| MluCI | AATT | 4 cut(s) | 180, 333, 382, 436 |
| MluNI | TGGCCA | 2 cut(s) | 359, 402 |
| MlyI | GAGTC | 3 cut(s) | 11, 46, 207 |
| MnlI | CCTC | 2 cut(s) | 208, 227 |
| Mox20I | TGGCCA | 2 cut(s) | 359, 402 |
| MroI | TCCGGA | 1 cut(s) | 48 |
| MscI | TGGCCA | 2 cut(s) | 359, 402 |
| MseI | TTAA | 1 cut(s) | 326 |
| MslI | CAYNNNNRTG | 1 cut(s) | 313 |
| Msp20I | TGGCCA | 2 cut(s) | 359, 402 |
| MspI | CCGG | 2 cut(s) | 49, 64 |
| MspR9I | CCNGG | 2 cut(s) | 14, 65 |
| MunI | CAATTG | 1 cut(s) | 180 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MvnI | CGCG | 1 cut(s) | 162 |
| NciI | CCSGG | 1 cut(s) | 65 |
| NdeI | CATATG | 1 cut(s) | 123 |
| NdeII | GATC | 1 cut(s) | 192 |
| NlaIII | CATG | 6 cut(s) | 46, 143, 390, 407, 428, 445 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| NruI | TCGCGA | 1 cut(s) | 162 |
| NsbI | TGCGCA | 1 cut(s) | 128 |
| NspI | RCATGY | 2 cut(s) | 46, 445 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PciI | ACATGT | 1 cut(s) | 42 |
| PfeI | GAWTC | 2 cut(s) | 136, 157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PkrI | GCNGC | 1 cut(s) | 283 |
| PleI | GAGTC | 3 cut(s) | 11, 46, 207 |
| PmaCI | CACGTG | 1 cut(s) | 104 |
| PmlI | CACGTG | 1 cut(s) | 104 |
| PpsI | GAGTC | 3 cut(s) | 11, 46, 207 |
| Ppu21I | YACGTR | 1 cut(s) | 104 |
| PscI | ACATGT | 1 cut(s) | 42 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspCI | CACGTG | 1 cut(s) | 104 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| RruI | TCGCGA | 1 cut(s) | 162 |
| RsaI | GTAC | 3 cut(s) | 60, 76, 263 |
| RsaNI | GTAC | 3 cut(s) | 59, 75, 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 313 |
| SaqAI | TTAA | 1 cut(s) | 326 |
| SatI | GCNGC | 1 cut(s) | 282 |
| Sau3AI | GATC | 1 cut(s) | 192 |
| SchI | GAGTC | 3 cut(s) | 11, 46, 207 |
| ScrFI | CCNGG | 2 cut(s) | 14, 65 |
| SduI | GDGCHC | 2 cut(s) | 118, 353 |
| SetI | ASST | 3 cut(s) | 106, 356, 369 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 313 |
| Sse9I | AATT | 4 cut(s) | 180, 333, 382, 436 |
| SspMI | CTAG | 2 cut(s) | 111, 240 |
| StyD4I | CCNGG | 2 cut(s) | 12, 63 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TasI | AATT | 4 cut(s) | 180, 333, 382, 436 |
| TatI | WGTACW | 2 cut(s) | 58, 261 |
| TfiI | GAWTC | 2 cut(s) | 136, 157 |
| Tru1I | TTAA | 1 cut(s) | 326 |
| Tru9I | TTAA | 1 cut(s) | 326 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 1 cut(s) | 281 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspDTI | ATGAA | 3 cut(s) | 101, 156, 375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| VneI | GTGCAC | 1 cut(s) | 349 |
| XapI | RAATTY | 1 cut(s) | 333 |
| XceI | RCATGY | 2 cut(s) | 46, 445 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 352 |
| XspI | CTAG | 2 cut(s) | 111, 240 |