ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1047 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 290 |
| AccII | CGCG | 2 cut(s) | 218, 522 |
| AciI | CCGC | 1 cut(s) | 986 |
| AclWI | GGATC | 2 cut(s) | 600, 1172 |
| AfaI | GTAC | 1 cut(s) | 789 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 106, 287, 290, 615, 996, 1049 |
| AflII | CTTAAG | 3 cut(s) | 83, 409, 971 |
| AgsI | TTSAA | 3 cut(s) | 166, 268, 1060 |
| AhlI | ACTAGT | 1 cut(s) | 515 |
| AjiI | CACGTC | 1 cut(s) | 1159 |
| AjnI | CCWGG | 2 cut(s) | 953, 994 |
| AluBI | AGCT | 7 cut(s) | 20, 436, 859, 865, 950, 967, 1039 |
| AluI | AGCT | 7 cut(s) | 20, 436, 859, 865, 950, 967, 1039 |
| Alw21I | GWGCWC | 1 cut(s) | 867 |
| Alw26I | GTCTC | 4 cut(s) | 145, 414, 1148, 1165 |
| AlwI | GGATC | 2 cut(s) | 600, 1172 |
| Ama87I | CYCGRG | 1 cut(s) | 1047 |
| AoxI | GGCC | 2 cut(s) | 769, 987 |
| ApaI | GGGCCC | 1 cut(s) | 773 |
| ApeKI | GCWGC | 3 cut(s) | 844, 1036, 1039 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 183, 215 |
| AseI | ATTAAT | 1 cut(s) | 47 |
| AspLEI | GCGC | 2 cut(s) | 218, 524 |
| AspS9I | GGNCC | 4 cut(s) | 769, 770, 924, 988 |
| AsuHPI | GGTGA | 2 cut(s) | 146, 993 |
| AvaI | CYCGRG | 1 cut(s) | 1047 |
| AvaII | GGWCC | 1 cut(s) | 924 |
| BaeGI | GKGCMC | 1 cut(s) | 773 |
| BanII | GRGCYC | 3 cut(s) | 773, 867, 1117 |
| BauI | CACGAG | 1 cut(s) | 1145 |
| BbsI | GAAGAC | 3 cut(s) | 243, 321, 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 867 |
| BbvI | GCAGC | 3 cut(s) | 831, 1026, 1048 |
| BccI | CCATC | 3 cut(s) | 999, 1127, 1185 |
| BciT130I | CCWGG | 2 cut(s) | 955, 996 |
| BciVI | GTATCC | 2 cut(s) | 673, 709 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 4 cut(s) | 145, 414, 1148, 1165 |
| BcuI | ACTAGT | 1 cut(s) | 515 |
| BfaI | CTAG | 7 cut(s) | 17, 437, 516, 570, 684, 860, 1175 |
| BfmI | CTRYAG | 2 cut(s) | 466, 475 |
| BfrI | CTTAAG | 3 cut(s) | 83, 409, 971 |
| BfuI | GTATCC | 2 cut(s) | 673, 709 |
| BisI | GCNGC | 4 cut(s) | 845, 987, 1037, 1040 |
| BlsI | GCNGC | 4 cut(s) | 846, 988, 1038, 1041 |
| Bme1390I | CCNGG | 2 cut(s) | 955, 996 |
| Bme18I | GGWCC | 1 cut(s) | 924 |
| BmeT110I | CYCGRG | 1 cut(s) | 1047 |
| BmgBI | CACGTC | 1 cut(s) | 1159 |
| BmgT120I | GGNCC | 4 cut(s) | 769, 770, 924, 988 |
| BmiI | GGNNCC | 3 cut(s) | 770, 771, 925 |
| BmrFI | CCNGG | 2 cut(s) | 955, 996 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BpiI | GAAGAC | 3 cut(s) | 243, 321, 587 |
| BpuEI | CTTGAG | 1 cut(s) | 803 |
| BsaJI | CCNNGG | 3 cut(s) | 242, 954, 995 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 106, 287, 290, 615, 996, 1049 |
| Bse1I | ACTGG | 2 cut(s) | 428, 1099 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 393 |
| BseBI | CCWGG | 2 cut(s) | 955, 996 |
| BseDI | CCNNGG | 3 cut(s) | 242, 954, 995 |
| BseGI | GGATG | 1 cut(s) | 991 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 106, 287, 290, 615, 996, 1049 |
| BseMI | GCAATG | 2 cut(s) | 69, 393 |
| BseNI | ACTGG | 2 cut(s) | 428, 1099 |
| BseRI | GAGGAG | 2 cut(s) | 377, 767 |
| BseSI | GKGCMC | 1 cut(s) | 773 |
| BseXI | GCAGC | 3 cut(s) | 831, 1026, 1048 |
| BsgI | GTGCAG | 1 cut(s) | 692 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 522 |
| BshFI | GGCC | 2 cut(s) | 771, 989 |
| BsiHKAI | GWGCWC | 1 cut(s) | 867 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1047 |
| BslFI | GGGAC | 3 cut(s) | 204, 921, 937 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 106, 287, 290, 615, 996, 1049 |
| BsmAI | GTCTC | 4 cut(s) | 145, 414, 1148, 1165 |
| BsmBI | CGTCTC | 1 cut(s) | 1165 |
| BsmFI | GGGAC | 3 cut(s) | 204, 921, 937 |
| BsmI | GAATGC | 1 cut(s) | 402 |
| BsnI | GGCC | 2 cut(s) | 771, 989 |
| BsoBI | CYCGRG | 1 cut(s) | 1047 |
| Bsp120I | GGGCCC | 1 cut(s) | 769 |
| Bsp1286I | GDGCHC | 3 cut(s) | 773, 867, 1117 |
| Bsp143I | GATC | 3 cut(s) | 325, 605, 1177 |
| Bsp19I | CCATGG | 1 cut(s) | 242 |
| BspACI | CCGC | 1 cut(s) | 986 |
| BspANI | GGCC | 2 cut(s) | 771, 989 |
| BspFNI | CGCG | 2 cut(s) | 218, 522 |
| BspLI | GGNNCC | 3 cut(s) | 770, 771, 925 |
| BspMAI | CTGCAG | 1 cut(s) | 479 |
| BspPI | GGATC | 2 cut(s) | 600, 1172 |
| BspQI | GCTCTTC | 2 cut(s) | 27, 872 |
| BspTI | CTTAAG | 3 cut(s) | 83, 409, 971 |
| BsrDI | GCAATG | 2 cut(s) | 69, 393 |
| BsrI | ACTGG | 2 cut(s) | 428, 1099 |
| BssECI | CCNNGG | 3 cut(s) | 242, 954, 995 |
| BssMI | GATC | 3 cut(s) | 325, 605, 1177 |
| BssSI | CACGAG | 1 cut(s) | 1145 |
| BssT1I | CCWWGG | 1 cut(s) | 242 |
| Bst2BI | CACGAG | 1 cut(s) | 1145 |
| Bst2UI | CCWGG | 2 cut(s) | 955, 996 |
| Bst4CI | ACNGT | 1 cut(s) | 1088 |
| Bst6I | CTCTTC | 3 cut(s) | 27, 532, 872 |
| BstAFI | CTTAAG | 3 cut(s) | 83, 409, 971 |
| BstC8I | GCNNGC | 2 cut(s) | 120, 400 |
| BstDEI | CTNAG | 3 cut(s) | 182, 545, 1029 |
| BstDSI | CCRYGG | 1 cut(s) | 242 |
| BstEII | GGTNACC | 1 cut(s) | 999 |
| BstF5I | GGATG | 1 cut(s) | 991 |
| BstFNI | CGCG | 2 cut(s) | 218, 522 |
| BstHHI | GCGC | 2 cut(s) | 218, 524 |
| BstKTI | GATC | 3 cut(s) | 328, 608, 1180 |
| BstMAI | GTCTC | 4 cut(s) | 145, 414, 1148, 1165 |
| BstMBI | GATC | 3 cut(s) | 325, 605, 1177 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 253, 442, 956 |
| BstNI | CCWGG | 2 cut(s) | 955, 996 |
| BstNSI | RCATGY | 3 cut(s) | 122, 728, 833 |
| BstPI | GGTNACC | 1 cut(s) | 999 |
| BstSCI | CCNGG | 2 cut(s) | 953, 994 |
| BstSFI | CTRYAG | 2 cut(s) | 466, 475 |
| BstSLI | GKGCMC | 1 cut(s) | 773 |
| BstUI | CGCG | 2 cut(s) | 218, 522 |
| BstV1I | GCAGC | 3 cut(s) | 831, 1026, 1048 |
| BstV2I | GAAGAC | 3 cut(s) | 243, 321, 587 |
| BstX2I | RGATCY | 1 cut(s) | 1177 |
| BstYI | RGATCY | 1 cut(s) | 1177 |
| BsuI | GTATCC | 2 cut(s) | 673, 709 |
| BsuRI | GGCC | 2 cut(s) | 771, 989 |
| BtgI | CCRYGG | 1 cut(s) | 242 |
| BtrI | CACGTC | 1 cut(s) | 1159 |
| BtsCI | GGATG | 1 cut(s) | 991 |
| BtsI | GCAGTG | 1 cut(s) | 484 |
| BtsIMutI | CAGTG | 3 cut(s) | 484, 501, 1093 |
| Cac8I | GCNNGC | 2 cut(s) | 120, 400 |
| CfoI | GCGC | 2 cut(s) | 218, 524 |
| Cfr13I | GGNCC | 4 cut(s) | 769, 770, 924, 988 |
| CseI | GACGC | 1 cut(s) | 1085 |
| Csp6I | GTAC | 1 cut(s) | 788 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 876, 911 |
| CviQI | GTAC | 1 cut(s) | 788 |
| DdeI | CTNAG | 3 cut(s) | 182, 545, 1029 |
| DpnI | GATC | 3 cut(s) | 327, 607, 1179 |
| DpnII | GATC | 3 cut(s) | 325, 605, 1177 |
| Eam1104I | CTCTTC | 3 cut(s) | 27, 532, 872 |
| EarI | CTCTTC | 3 cut(s) | 27, 532, 872 |
| Ecl136II | GAGCTC | 1 cut(s) | 865 |
| Eco130I | CCWWGG | 1 cut(s) | 242 |
| Eco24I | GRGCYC | 3 cut(s) | 773, 867, 1117 |
| Eco47I | GGWCC | 1 cut(s) | 924 |
| Eco53kI | GAGCTC | 1 cut(s) | 865 |
| Eco88I | CYCGRG | 1 cut(s) | 1047 |
| Eco91I | GGTNACC | 1 cut(s) | 999 |
| EcoICRI | GAGCTC | 1 cut(s) | 865 |
| EcoO109I | RGGNCCY | 2 cut(s) | 769, 924 |
| EcoO65I | GGTNACC | 1 cut(s) | 999 |
| EcoRII | CCWGG | 2 cut(s) | 953, 994 |
| EcoT14I | CCWWGG | 1 cut(s) | 242 |
| EcoT22I | ATGCAT | 2 cut(s) | 120, 820 |
| EcoT38I | GRGCYC | 3 cut(s) | 773, 867, 1117 |
| ErhI | CCWWGG | 1 cut(s) | 242 |
| Esp3I | CGTCTC | 1 cut(s) | 1165 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 165, 197, 911, 943 |
| FaqI | GGGAC | 3 cut(s) | 204, 921, 937 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 4 cut(s) | 845, 987, 1037, 1040 |
| FokI | GGATG | 1 cut(s) | 978 |
| FriOI | GRGCYC | 3 cut(s) | 773, 867, 1117 |
| Fsp4HI | GCNGC | 4 cut(s) | 845, 987, 1037, 1040 |
| FspBI | CTAG | 7 cut(s) | 17, 437, 516, 570, 684, 860, 1175 |
| GlaI | GCGC | 2 cut(s) | 217, 523 |
| GluI | GCNGC | 4 cut(s) | 845, 987, 1037, 1040 |
| HaeIII | GGCC | 2 cut(s) | 771, 989 |
| HgaI | GACGC | 1 cut(s) | 1085 |
| HhaI | GCGC | 2 cut(s) | 218, 524 |
| Hin6I | GCGC | 2 cut(s) | 216, 522 |
| HinP1I | GCGC | 2 cut(s) | 216, 522 |
| HincII | GTYRAC | 1 cut(s) | 388 |
| HindII | GTYRAC | 1 cut(s) | 388 |
| HinfI | GANTC | 4 cut(s) | 462, 557, 583, 648 |
| HphI | GGTGA | 2 cut(s) | 146, 993 |
| Hpy166II | GTNNAC | 3 cut(s) | 388, 501, 542 |
| Hpy188I | TCNGA | 3 cut(s) | 109, 605, 1190 |
| Hpy188III | TCNNGA | 2 cut(s) | 173, 1123 |
| Hpy8I | GTNNAC | 3 cut(s) | 388, 501, 542 |
| HpyAV | CCTTC | 3 cut(s) | 180, 810, 913 |
| HpyCH4III | ACNGT | 1 cut(s) | 1088 |
| HpyCH4IV | ACGT | 2 cut(s) | 790, 1158 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 253, 442, 956 |
| HpyF3I | CTNAG | 3 cut(s) | 182, 545, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 790, 1158 |
| HspAI | GCGC | 2 cut(s) | 216, 522 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| Kzo9I | GATC | 3 cut(s) | 325, 605, 1177 |
| LguI | GCTCTTC | 2 cut(s) | 27, 872 |
| LmnI | GCTCC | 1 cut(s) | 972 |
| Lsp1109I | GCAGC | 3 cut(s) | 831, 1026, 1048 |
| MaeI | CTAG | 7 cut(s) | 17, 437, 516, 570, 684, 860, 1175 |
| MaeII | ACGT | 2 cut(s) | 790, 1158 |
| MaeIII | GTNAC | 3 cut(s) | 791, 910, 999 |
| MalI | GATC | 3 cut(s) | 327, 607, 1179 |
| MboI | GATC | 3 cut(s) | 325, 605, 1177 |
| MboII | GAAGA | 9 cut(s) | 14, 248, 326, 519, 592, 859, 862, 1021, 1142 |
| MfeI | CAATTG | 1 cut(s) | 1151 |
| MflI | RGATCY | 1 cut(s) | 1177 |
| MhlI | GDGCHC | 3 cut(s) | 773, 867, 1117 |
| MluCI | AATT | 5 cut(s) | 652, 703, 736, 747, 1151 |
| MlyI | GAGTC | 3 cut(s) | 471, 577, 657 |
| MmeI | TCCRAC | 4 cut(s) | 20, 276, 657, 1178 |
| Mph1103I | ATGCAT | 2 cut(s) | 120, 820 |
| MseI | TTAA | 7 cut(s) | 12, 47, 84, 221, 410, 972, 1065 |
| MslI | CAYNNNNRTG | 1 cut(s) | 834 |
| MspA1I | CMGCKG | 1 cut(s) | 1039 |
| MspCI | CTTAAG | 3 cut(s) | 83, 409, 971 |
| MspR9I | CCNGG | 2 cut(s) | 955, 996 |
| MunI | CAATTG | 1 cut(s) | 1151 |
| Mva1269I | GAATGC | 1 cut(s) | 402 |
| MvaI | CCWGG | 2 cut(s) | 955, 996 |
| MvnI | CGCG | 2 cut(s) | 218, 522 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 253, 442, 956 |
| NcoI | CCATGG | 1 cut(s) | 242 |
| NdeII | GATC | 3 cut(s) | 325, 605, 1177 |
| NlaIV | GGNNCC | 3 cut(s) | 770, 771, 925 |
| NmuCI | GTSAC | 1 cut(s) | 999 |
| NsiI | ATGCAT | 2 cut(s) | 120, 820 |
| NspI | RCATGY | 3 cut(s) | 122, 728, 833 |
| PaeI | GCATGC | 1 cut(s) | 122 |
| PaeR7I | CTCGAG | 1 cut(s) | 1047 |
| PciSI | GCTCTTC | 2 cut(s) | 27, 872 |
| PctI | GAATGC | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 557 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 290 |
| PkrI | GCNGC | 4 cut(s) | 846, 988, 1038, 1041 |
| PleI | GAGTC | 3 cut(s) | 470, 577, 656 |
| PpsI | GAGTC | 3 cut(s) | 470, 577, 656 |
| PpuMI | RGGWCCY | 1 cut(s) | 924 |
| PshBI | ATTAAT | 1 cut(s) | 47 |
| Psp124BI | GAGCTC | 1 cut(s) | 867 |
| Psp5II | RGGWCCY | 1 cut(s) | 924 |
| Psp6I | CCWGG | 2 cut(s) | 953, 994 |
| PspEI | GGTNACC | 1 cut(s) | 999 |
| PspGI | CCWGG | 2 cut(s) | 953, 994 |
| PspN4I | GGNNCC | 3 cut(s) | 770, 771, 925 |
| PspOMI | GGGCCC | 1 cut(s) | 769 |
| PspPI | GGNCC | 4 cut(s) | 769, 770, 924, 988 |
| PspPPI | RGGWCCY | 1 cut(s) | 924 |
| PspXI | VCTCGAGB | 1 cut(s) | 1047 |
| PstI | CTGCAG | 1 cut(s) | 479 |
| PsuI | RGATCY | 1 cut(s) | 1177 |
| PvuII | CAGCTG | 1 cut(s) | 1039 |
| RsaI | GTAC | 1 cut(s) | 789 |
| RsaNI | GTAC | 1 cut(s) | 788 |
| RseI | CAYNNNNRTG | 1 cut(s) | 834 |
| SacI | GAGCTC | 1 cut(s) | 867 |
| SapI | GCTCTTC | 2 cut(s) | 27, 872 |
| SaqAI | TTAA | 7 cut(s) | 12, 47, 84, 221, 410, 972, 1065 |
| SatI | GCNGC | 4 cut(s) | 845, 987, 1037, 1040 |
| Sau3AI | GATC | 3 cut(s) | 325, 605, 1177 |
| Sau96I | GGNCC | 4 cut(s) | 769, 770, 924, 988 |
| SchI | GAGTC | 3 cut(s) | 471, 577, 657 |
| ScrFI | CCNGG | 2 cut(s) | 955, 996 |
| SduI | GDGCHC | 3 cut(s) | 773, 867, 1117 |
| SfcI | CTRYAG | 2 cut(s) | 466, 475 |
| Sfr274I | CTCGAG | 1 cut(s) | 1047 |
| SinI | GGWCC | 1 cut(s) | 924 |
| SlaI | CTCGAG | 1 cut(s) | 1047 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 834 |
| SmlI | CTYRAG | 5 cut(s) | 83, 409, 782, 971, 1047 |
| SmoI | CTYRAG | 5 cut(s) | 83, 409, 782, 971, 1047 |
| SpeI | ACTAGT | 1 cut(s) | 515 |
| SphI | GCATGC | 1 cut(s) | 122 |
| Sse9I | AATT | 5 cut(s) | 652, 703, 736, 747, 1151 |
| SsiI | CCGC | 1 cut(s) | 986 |
| SspI | AATATT | 1 cut(s) | 1069 |
| SspMI | CTAG | 7 cut(s) | 17, 437, 516, 570, 684, 860, 1175 |
| SstI | GAGCTC | 1 cut(s) | 867 |
| StyD4I | CCNGG | 2 cut(s) | 953, 994 |
| StyI | CCWWGG | 1 cut(s) | 242 |
| TaaI | ACNGT | 1 cut(s) | 1088 |
| TaiI | ACGT | 2 cut(s) | 793, 1161 |
| TaqI | TCGA | 2 cut(s) | 661, 1048 |
| TasI | AATT | 5 cut(s) | 652, 703, 736, 747, 1151 |
| TauI | GCSGC | 1 cut(s) | 989 |
| TfiI | GAWTC | 1 cut(s) | 557 |
| Tru1I | TTAA | 7 cut(s) | 12, 47, 84, 221, 410, 972, 1065 |
| Tru9I | TTAA | 7 cut(s) | 12, 47, 84, 221, 410, 972, 1065 |
| TscAI | CASTG | 3 cut(s) | 484, 508, 1093 |
| TseFI | GTSAC | 1 cut(s) | 999 |
| TseI | GCWGC | 3 cut(s) | 844, 1036, 1039 |
| Tsp45I | GTSAC | 1 cut(s) | 999 |
| TspDTI | ATGAA | 6 cut(s) | 346, 519, 792, 803, 862, 1143 |
| TspRI | CASTG | 3 cut(s) | 484, 508, 1093 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 290 |
| Vha464I | CTTAAG | 3 cut(s) | 83, 409, 971 |
| VpaK11BI | GGWCC | 1 cut(s) | 924 |
| VspI | ATTAAT | 1 cut(s) | 47 |
| XceI | RCATGY | 3 cut(s) | 122, 728, 833 |
| XhoI | CTCGAG | 1 cut(s) | 1047 |
| XspI | CTAG | 7 cut(s) | 17, 437, 516, 570, 684, 860, 1175 |
| Zsp2I | ATGCAT | 2 cut(s) | 120, 820 |