ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 720 |
| AciI | CCGC | 2 cut(s) | 98, 610 |
| AclI | AACGTT | 1 cut(s) | 663 |
| AclWI | GGATC | 1 cut(s) | 79 |
| AcoI | YGGCCR | 1 cut(s) | 1392 |
| AcsI | RAATTY | 2 cut(s) | 766, 1291 |
| AcuI | CTGAAG | 2 cut(s) | 240, 1146 |
| AdeI | CACNNNGTG | 1 cut(s) | 607 |
| AfaI | GTAC | 3 cut(s) | 409, 616, 717 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 162, 229, 296, 404, 1114, 1140, 1318 |
| AgsI | TTSAA | 3 cut(s) | 850, 1052, 1150 |
| AjnI | CCWGG | 1 cut(s) | 331 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 443, 475 |
| Alw21I | GWGCWC | 2 cut(s) | 887, 1064 |
| Alw26I | GTCTC | 2 cut(s) | 1357, 1445 |
| AlwI | GGATC | 1 cut(s) | 79 |
| AoxI | GGCC | 4 cut(s) | 169, 383, 1142, 1392 |
| ApeKI | GCWGC | 6 cut(s) | 594, 917, 1076, 1130, 1265, 1268 |
| ApoI | RAATTY | 2 cut(s) | 766, 1291 |
| AspLEI | GCGC | 2 cut(s) | 722, 1408 |
| AspS9I | GGNCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| AsuC2I | CCSGG | 4 cut(s) | 132, 177, 199, 266 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 436, 646, 751, 1208 |
| AvaII | GGWCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| BalI | TGGCCA | 1 cut(s) | 1394 |
| BanII | GRGCYC | 3 cut(s) | 241, 887, 1064 |
| BauI | CACGAG | 1 cut(s) | 489 |
| BbsI | GAAGAC | 2 cut(s) | 21, 91 |
| Bbv12I | GWGCWC | 2 cut(s) | 887, 1064 |
| BbvI | GCAGC | 6 cut(s) | 581, 929, 1063, 1142, 1277, 1280 |
| BccI | CCATC | 3 cut(s) | 41, 946, 1218 |
| BceAI | ACGGC | 2 cut(s) | 111, 398 |
| BciT130I | CCWGG | 1 cut(s) | 333 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcnI | CCSGG | 4 cut(s) | 132, 177, 199, 266 |
| BcoDI | GTCTC | 2 cut(s) | 1357, 1445 |
| BfaI | CTAG | 5 cut(s) | 242, 302, 1136, 1416, 1513 |
| BisI | GCNGC | 6 cut(s) | 595, 918, 1077, 1131, 1266, 1269 |
| BlpI | GCTNAGC | 1 cut(s) | 1126 |
| BlsI | GCNGC | 6 cut(s) | 596, 919, 1078, 1132, 1267, 1270 |
| BmcAI | AGTACT | 1 cut(s) | 616 |
| Bme1390I | CCNGG | 5 cut(s) | 132, 177, 199, 266, 333 |
| Bme18I | GGWCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| BmgT120I | GGNCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| BmiI | GGNNCC | 2 cut(s) | 705, 870 |
| BmrFI | CCNGG | 5 cut(s) | 132, 177, 199, 266, 333 |
| BmrI | ACTGGG | 1 cut(s) | 66 |
| BmsI | GCATC | 2 cut(s) | 653, 904 |
| BmuI | ACTGGG | 1 cut(s) | 66 |
| BpiI | GAAGAC | 2 cut(s) | 21, 91 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1126 |
| BpuMI | CCSGG | 4 cut(s) | 132, 177, 199, 266 |
| BsaJI | CCNNGG | 3 cut(s) | 175, 711, 1219 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 821, 851 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 162, 229, 296, 404, 1114, 1140, 1318 |
| Bse118I | RCCGGY | 2 cut(s) | 109, 311 |
| Bse1I | ACTGG | 2 cut(s) | 61, 1395 |
| Bse3DI | GCAATG | 1 cut(s) | 1206 |
| BseBI | CCWGG | 1 cut(s) | 333 |
| BseDI | CCNNGG | 3 cut(s) | 175, 711, 1219 |
| BseGI | GGATG | 2 cut(s) | 838, 1229 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 162, 229, 296, 404, 1114, 1140, 1318 |
| BseMI | GCAATG | 1 cut(s) | 1206 |
| BseMII | CTCAG | 2 cut(s) | 402, 1278 |
| BseNI | ACTGG | 2 cut(s) | 61, 1395 |
| BseRI | GAGGAG | 1 cut(s) | 509 |
| BseXI | GCAGC | 6 cut(s) | 581, 929, 1063, 1142, 1277, 1280 |
| BseYI | CCCAGC | 1 cut(s) | 1196 |
| BsgI | GTGCAG | 2 cut(s) | 100, 1275 |
| Bsh1236I | CGCG | 1 cut(s) | 720 |
| BshFI | GGCC | 4 cut(s) | 171, 385, 1144, 1394 |
| BsiHKAI | GWGCWC | 2 cut(s) | 887, 1064 |
| BsiSI | CCGG | 6 cut(s) | 110, 131, 177, 198, 265, 312 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 162, 229, 296, 404, 1114, 1140, 1318 |
| BsmAI | GTCTC | 2 cut(s) | 1357, 1445 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 4 cut(s) | 171, 385, 1144, 1394 |
| Bsp1286I | GDGCHC | 3 cut(s) | 241, 887, 1064 |
| Bsp143I | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1126 |
| BspACI | CCGC | 2 cut(s) | 98, 610 |
| BspANI | GGCC | 4 cut(s) | 171, 385, 1144, 1394 |
| BspCNI | CTCAG | 2 cut(s) | 403, 1279 |
| BspFNI | CGCG | 1 cut(s) | 720 |
| BspLI | GGNNCC | 2 cut(s) | 705, 870 |
| BspPI | GGATC | 1 cut(s) | 79 |
| BspQI | GCTCTTC | 1 cut(s) | 584 |
| BsrDI | GCAATG | 1 cut(s) | 1206 |
| BsrFI | RCCGGY | 2 cut(s) | 109, 311 |
| BsrI | ACTGG | 2 cut(s) | 61, 1395 |
| BssAI | RCCGGY | 2 cut(s) | 109, 311 |
| BssECI | CCNNGG | 3 cut(s) | 175, 711, 1219 |
| BssMI | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| BssSI | CACGAG | 1 cut(s) | 489 |
| BssT1I | CCWWGG | 2 cut(s) | 711, 1219 |
| Bst2BI | CACGAG | 1 cut(s) | 489 |
| Bst2UI | CCWGG | 1 cut(s) | 333 |
| Bst4CI | ACNGT | 3 cut(s) | 78, 586, 1253 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1262, 1274 |
| BstC8I | GCNNGC | 3 cut(s) | 378, 530, 658 |
| BstDEI | CTNAG | 4 cut(s) | 411, 759, 1126, 1287 |
| BstEII | GGTNACC | 2 cut(s) | 4, 634 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1316 |
| BstF5I | GGATG | 2 cut(s) | 838, 1229 |
| BstFNI | CGCG | 1 cut(s) | 720 |
| BstHHI | GCGC | 2 cut(s) | 722, 1408 |
| BstKTI | GATC | 5 cut(s) | 45, 74, 442, 505, 568 |
| BstMAI | GTCTC | 2 cut(s) | 1357, 1445 |
| BstMBI | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 377, 382, 778, 1136, 1193, 1262, 1274, 1283, 1412 |
| BstNI | CCWGG | 1 cut(s) | 333 |
| BstNSI | RCATGY | 3 cut(s) | 845, 1343, 1412 |
| BstPI | GGTNACC | 2 cut(s) | 4, 634 |
| BstSCI | CCNGG | 5 cut(s) | 130, 175, 197, 264, 331 |
| BstUI | CGCG | 1 cut(s) | 720 |
| BstV1I | GCAGC | 6 cut(s) | 581, 929, 1063, 1142, 1277, 1280 |
| BstV2I | GAAGAC | 2 cut(s) | 21, 91 |
| BsuRI | GGCC | 4 cut(s) | 171, 385, 1144, 1394 |
| BtsCI | GGATG | 2 cut(s) | 838, 1229 |
| BtsIMutI | CAGTG | 1 cut(s) | 83 |
| Cac8I | GCNNGC | 3 cut(s) | 378, 530, 658 |
| CfoI | GCGC | 2 cut(s) | 722, 1408 |
| Cfr10I | RCCGGY | 2 cut(s) | 109, 311 |
| Cfr13I | GGNCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| Csp6I | GTAC | 3 cut(s) | 408, 615, 716 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1371, 1406 |
| CviAII | CATG | 5 cut(s) | 842, 1154, 1174, 1340, 1409 |
| CviQI | GTAC | 3 cut(s) | 408, 615, 716 |
| DdeI | CTNAG | 4 cut(s) | 411, 759, 1126, 1287 |
| DpnI | GATC | 5 cut(s) | 44, 73, 441, 504, 567 |
| DpnII | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| DraIII | CACNNNGTG | 1 cut(s) | 607 |
| EaeI | YGGCCR | 1 cut(s) | 1392 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| EciI | GGCGGA | 1 cut(s) | 113 |
| Ecl136II | GAGCTC | 2 cut(s) | 885, 1062 |
| Eco130I | CCWWGG | 2 cut(s) | 711, 1219 |
| Eco147I | AGGCCT | 1 cut(s) | 1144 |
| Eco24I | GRGCYC | 3 cut(s) | 241, 887, 1064 |
| Eco47I | GGWCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| Eco53kI | GAGCTC | 2 cut(s) | 885, 1062 |
| Eco57I | CTGAAG | 2 cut(s) | 240, 1146 |
| Eco91I | GGTNACC | 2 cut(s) | 4, 634 |
| EcoICRI | GAGCTC | 2 cut(s) | 885, 1062 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1316 |
| EcoO65I | GGTNACC | 2 cut(s) | 4, 634 |
| EcoRII | CCWGG | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 2 cut(s) | 711, 1219 |
| EcoT38I | GRGCYC | 3 cut(s) | 241, 887, 1064 |
| ErhI | CCWWGG | 2 cut(s) | 711, 1219 |
| FaeI | CATG | 5 cut(s) | 845, 1157, 1177, 1343, 1412 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 5 cut(s) | 841, 1153, 1173, 1339, 1408 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| Fnu4HI | GCNGC | 6 cut(s) | 595, 918, 1077, 1131, 1266, 1269 |
| FokI | GGATG | 2 cut(s) | 845, 1236 |
| FriOI | GRGCYC | 3 cut(s) | 241, 887, 1064 |
| Fsp4HI | GCNGC | 6 cut(s) | 595, 918, 1077, 1131, 1266, 1269 |
| FspBI | CTAG | 5 cut(s) | 242, 302, 1136, 1416, 1513 |
| GlaI | GCGC | 2 cut(s) | 721, 1407 |
| GluI | GCNGC | 6 cut(s) | 595, 918, 1077, 1131, 1266, 1269 |
| GsaI | CCCAGC | 1 cut(s) | 1200 |
| HaeIII | GGCC | 4 cut(s) | 171, 385, 1144, 1394 |
| HapII | CCGG | 6 cut(s) | 110, 131, 177, 198, 265, 312 |
| HhaI | GCGC | 2 cut(s) | 722, 1408 |
| Hin1II | CATG | 5 cut(s) | 845, 1157, 1177, 1343, 1412 |
| Hin6I | GCGC | 2 cut(s) | 720, 1406 |
| HinP1I | GCGC | 2 cut(s) | 720, 1406 |
| HindIII | AAGCTT | 2 cut(s) | 526, 1497 |
| HinfI | GANTC | 2 cut(s) | 26, 1453 |
| HpaII | CCGG | 6 cut(s) | 110, 131, 177, 198, 265, 312 |
| HphI | GGTGA | 5 cut(s) | 16, 436, 646, 751, 1208 |
| Hpy166II | GTNNAC | 1 cut(s) | 536 |
| Hpy188I | TCNGA | 9 cut(s) | 142, 192, 209, 259, 276, 326, 343, 570, 1300 |
| Hpy188III | TCNNGA | 6 cut(s) | 443, 491, 850, 1033, 1469, 1478 |
| Hpy8I | GTNNAC | 1 cut(s) | 536 |
| Hpy99I | CGWCG | 1 cut(s) | 26 |
| HpyAV | CCTTC | 5 cut(s) | 445, 622, 676, 1006, 1030 |
| HpyCH4III | ACNGT | 3 cut(s) | 78, 586, 1253 |
| HpyCH4IV | ACGT | 4 cut(s) | 88, 603, 663, 1473 |
| HpyCH4V | TGCA | 7 cut(s) | 81, 841, 917, 1211, 1256, 1265, 1277 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 377, 382, 778, 1136, 1193, 1262, 1274, 1283, 1412 |
| HpyF3I | CTNAG | 4 cut(s) | 411, 759, 1126, 1287 |
| HpySE526I | ACGT | 4 cut(s) | 88, 603, 663, 1473 |
| Hsp92II | CATG | 5 cut(s) | 845, 1157, 1177, 1343, 1412 |
| HspAI | GCGC | 2 cut(s) | 720, 1406 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| Kzo9I | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| LguI | GCTCTTC | 1 cut(s) | 584 |
| Lsp1109I | GCAGC | 6 cut(s) | 581, 929, 1063, 1142, 1277, 1280 |
| LweI | GCATC | 2 cut(s) | 653, 904 |
| MaeI | CTAG | 5 cut(s) | 242, 302, 1136, 1416, 1513 |
| MaeII | ACGT | 4 cut(s) | 88, 603, 663, 1473 |
| MaeIII | GTNAC | 5 cut(s) | 4, 634, 1247, 1418, 1507 |
| MalI | GATC | 5 cut(s) | 44, 73, 441, 504, 567 |
| MboI | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| MboII | GAAGA | 6 cut(s) | 21, 96, 246, 601, 642, 897 |
| MhlI | GDGCHC | 3 cut(s) | 241, 887, 1064 |
| MlsI | TGGCCA | 1 cut(s) | 1394 |
| MluCI | AATT | 4 cut(s) | 766, 853, 1212, 1291 |
| MluNI | TGGCCA | 1 cut(s) | 1394 |
| MlyI | GAGTC | 2 cut(s) | 35, 1447 |
| MmeI | TCCRAC | 4 cut(s) | 441, 779, 1037, 1068 |
| Mox20I | TGGCCA | 1 cut(s) | 1394 |
| MscI | TGGCCA | 1 cut(s) | 1394 |
| MseI | TTAA | 1 cut(s) | 1494 |
| Msp20I | TGGCCA | 1 cut(s) | 1394 |
| MspA1I | CMGCKG | 2 cut(s) | 1102, 1286 |
| MspI | CCGG | 6 cut(s) | 110, 131, 177, 198, 265, 312 |
| MspR9I | CCNGG | 5 cut(s) | 132, 177, 199, 266, 333 |
| MvaI | CCWGG | 1 cut(s) | 333 |
| MvnI | CGCG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 377, 382, 778, 1136, 1193, 1262, 1274, 1283, 1412 |
| NciI | CCSGG | 4 cut(s) | 132, 177, 199, 266 |
| NdeII | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| NlaIII | CATG | 5 cut(s) | 845, 1157, 1177, 1343, 1412 |
| NlaIV | GGNNCC | 2 cut(s) | 705, 870 |
| NmuCI | GTSAC | 3 cut(s) | 4, 634, 1247 |
| NspI | RCATGY | 3 cut(s) | 845, 1343, 1412 |
| PceI | AGGCCT | 1 cut(s) | 1144 |
| PciSI | GCTCTTC | 1 cut(s) | 584 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 358 |
| PfoI | TCCNGGA | 4 cut(s) | 130, 197, 264, 331 |
| PkrI | GCNGC | 6 cut(s) | 596, 919, 1078, 1132, 1267, 1270 |
| PleI | GAGTC | 2 cut(s) | 34, 1447 |
| PpsI | GAGTC | 2 cut(s) | 34, 1447 |
| Psp124BI | GAGCTC | 2 cut(s) | 887, 1064 |
| Psp1406I | AACGTT | 1 cut(s) | 663 |
| Psp6I | CCWGG | 1 cut(s) | 331 |
| PspEI | GGTNACC | 2 cut(s) | 4, 634 |
| PspFI | CCCAGC | 1 cut(s) | 1196 |
| PspGI | CCWGG | 1 cut(s) | 331 |
| PspN4I | GGNNCC | 2 cut(s) | 705, 870 |
| PspPI | GGNCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| PvuII | CAGCTG | 2 cut(s) | 1102, 1286 |
| RsaI | GTAC | 3 cut(s) | 409, 616, 717 |
| RsaNI | GTAC | 3 cut(s) | 408, 615, 716 |
| SacI | GAGCTC | 2 cut(s) | 887, 1064 |
| SapI | GCTCTTC | 1 cut(s) | 584 |
| SaqAI | TTAA | 1 cut(s) | 1494 |
| SatI | GCNGC | 6 cut(s) | 595, 918, 1077, 1131, 1266, 1269 |
| Sau3AI | GATC | 5 cut(s) | 42, 71, 439, 502, 565 |
| Sau96I | GGNCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| ScaI | AGTACT | 1 cut(s) | 616 |
| SchI | GAGTC | 2 cut(s) | 35, 1447 |
| ScrFI | CCNGG | 5 cut(s) | 132, 177, 199, 266, 333 |
| SduI | GDGCHC | 3 cut(s) | 241, 887, 1064 |
| SfaNI | GCATC | 2 cut(s) | 653, 904 |
| SinI | GGWCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| Sse9I | AATT | 4 cut(s) | 766, 853, 1212, 1291 |
| SseBI | AGGCCT | 1 cut(s) | 1144 |
| SsiI | CCGC | 2 cut(s) | 98, 610 |
| SspMI | CTAG | 5 cut(s) | 242, 302, 1136, 1416, 1513 |
| SstI | GAGCTC | 2 cut(s) | 887, 1064 |
| StuI | AGGCCT | 1 cut(s) | 1144 |
| StyD4I | CCNGG | 5 cut(s) | 130, 175, 197, 264, 331 |
| StyI | CCWWGG | 2 cut(s) | 711, 1219 |
| TaaI | ACNGT | 3 cut(s) | 78, 586, 1253 |
| TaiI | ACGT | 4 cut(s) | 91, 606, 666, 1476 |
| TaqI | TCGA | 4 cut(s) | 45, 361, 477, 1479 |
| TasI | AATT | 4 cut(s) | 766, 853, 1212, 1291 |
| TatI | WGTACW | 1 cut(s) | 614 |
| Tru1I | TTAA | 1 cut(s) | 1494 |
| Tru9I | TTAA | 1 cut(s) | 1494 |
| TscAI | CASTG | 1 cut(s) | 83 |
| TseFI | GTSAC | 3 cut(s) | 4, 634, 1247 |
| TseI | GCWGC | 6 cut(s) | 594, 917, 1076, 1130, 1265, 1268 |
| Tsp45I | GTSAC | 3 cut(s) | 4, 634, 1247 |
| TspDTI | ATGAA | 3 cut(s) | 109, 176, 715 |
| TspRI | CASTG | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 5 cut(s) | 128, 195, 262, 329, 1105 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1316 |
| XapI | RAATTY | 2 cut(s) | 766, 1291 |
| XceI | RCATGY | 3 cut(s) | 845, 1343, 1412 |
| XspI | CTAG | 5 cut(s) | 242, 302, 1136, 1416, 1513 |
| ZrmI | AGTACT | 1 cut(s) | 616 |