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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 380, 441 |
| AciI | CCGC | 2 cut(s) | 420, 435 |
| AclWI | GGATC | 1 cut(s) | 239 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 270, 336, 389 |
| AgeI | ACCGGT | 1 cut(s) | 263 |
| AgsI | TTSAA | 1 cut(s) | 56 |
| AjiI | CACGTC | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 348 |
| AluBI | AGCT | 3 cut(s) | 37, 167, 368 |
| AluI | AGCT | 3 cut(s) | 37, 167, 368 |
| Alw26I | GTCTC | 2 cut(s) | 207, 369 |
| AlwI | GGATC | 1 cut(s) | 239 |
| Ama87I | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| AoxI | GGCC | 3 cut(s) | 291, 351, 399 |
| ApeKI | GCWGC | 2 cut(s) | 164, 365 |
| AsiGI | ACCGGT | 1 cut(s) | 263 |
| AspLEI | GCGC | 2 cut(s) | 382, 441 |
| AspS9I | GGNCC | 3 cut(s) | 97, 292, 352 |
| AsuC2I | CCSGG | 4 cut(s) | 295, 296, 337, 338 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AsuNHI | GCTAGC | 1 cut(s) | 344 |
| AvaI | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| AvaII | GGWCC | 1 cut(s) | 97 |
| BanII | GRGCYC | 1 cut(s) | 330 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 141, 173 |
| BbsI | GAAGAC | 1 cut(s) | 405 |
| BbvI | GCAGC | 2 cut(s) | 176, 377 |
| BccI | CCATC | 1 cut(s) | 162 |
| BceAI | ACGGC | 1 cut(s) | 367 |
| BciT130I | CCWGG | 1 cut(s) | 350 |
| BcnI | CCSGG | 4 cut(s) | 295, 296, 337, 338 |
| BcoDI | GTCTC | 2 cut(s) | 207, 369 |
| BfaI | CTAG | 6 cut(s) | 38, 129, 161, 188, 345, 417 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 3 cut(s) | 165, 366, 421 |
| BlsI | GCNGC | 3 cut(s) | 166, 367, 422 |
| Bme1390I | CCNGG | 5 cut(s) | 295, 296, 337, 338, 350 |
| Bme18I | GGWCC | 1 cut(s) | 97 |
| BmeT110I | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| BmgBI | CACGTC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 3 cut(s) | 97, 292, 352 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BmrFI | CCNGG | 5 cut(s) | 295, 296, 337, 338, 350 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BmtI | GCTAGC | 1 cut(s) | 348 |
| BpiI | GAAGAC | 1 cut(s) | 405 |
| BpuMI | CCSGG | 4 cut(s) | 295, 296, 337, 338 |
| BsaI | GGTCTC | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 4 cut(s) | 281, 294, 336, 383 |
| BsaWI | WCCGGW | 1 cut(s) | 263 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 270, 336, 389 |
| Bse118I | RCCGGY | 1 cut(s) | 263 |
| Bse1I | ACTGG | 1 cut(s) | 402 |
| BseBI | CCWGG | 1 cut(s) | 350 |
| BseDI | CCNNGG | 4 cut(s) | 281, 294, 336, 383 |
| BseGI | GGATG | 1 cut(s) | 346 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 270, 336, 389 |
| BseNI | ACTGG | 1 cut(s) | 402 |
| BseXI | GCAGC | 2 cut(s) | 176, 377 |
| BsgI | GTGCAG | 1 cut(s) | 162 |
| Bsh1236I | CGCG | 2 cut(s) | 380, 441 |
| Bsh1285I | CGRYCG | 1 cut(s) | 324 |
| BshFI | GGCC | 3 cut(s) | 293, 353, 401 |
| BshTI | ACCGGT | 1 cut(s) | 263 |
| BsiEI | CGRYCG | 1 cut(s) | 324 |
| BsiHKCI | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| BsiSI | CCGG | 3 cut(s) | 264, 295, 337 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 270, 336, 389 |
| BsmAI | GTCTC | 2 cut(s) | 207, 369 |
| BsmBI | CGTCTC | 1 cut(s) | 369 |
| BsnI | GGCC | 3 cut(s) | 293, 353, 401 |
| Bso31I | GGTCTC | 1 cut(s) | 207 |
| BsoBI | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| Bsp1286I | GDGCHC | 1 cut(s) | 330 |
| Bsp143I | GATC | 4 cut(s) | 184, 226, 244, 321 |
| BspACI | CCGC | 2 cut(s) | 420, 435 |
| BspANI | GGCC | 3 cut(s) | 293, 353, 401 |
| BspFNI | CGCG | 2 cut(s) | 380, 441 |
| BspHI | TCATGA | 2 cut(s) | 169, 253 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BspOI | GCTAGC | 1 cut(s) | 348 |
| BspPI | GGATC | 1 cut(s) | 239 |
| BspQI | GCTCTTC | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 1 cut(s) | 207 |
| BsrFI | RCCGGY | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 402 |
| BssAI | RCCGGY | 1 cut(s) | 263 |
| BssECI | CCNNGG | 4 cut(s) | 281, 294, 336, 383 |
| BssMI | GATC | 4 cut(s) | 184, 226, 244, 321 |
| Bst2UI | CCWGG | 1 cut(s) | 350 |
| Bst4CI | ACNGT | 1 cut(s) | 285 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 346, 437 |
| BstDSI | CCRYGG | 2 cut(s) | 281, 383 |
| BstEII | GGTNACC | 1 cut(s) | 232 |
| BstF5I | GGATG | 1 cut(s) | 346 |
| BstFNI | CGCG | 2 cut(s) | 380, 441 |
| BstHHI | GCGC | 2 cut(s) | 382, 441 |
| BstKTI | GATC | 4 cut(s) | 187, 229, 247, 324 |
| BstMAI | GTCTC | 2 cut(s) | 207, 369 |
| BstMBI | GATC | 4 cut(s) | 184, 226, 244, 321 |
| BstMCI | CGRYCG | 1 cut(s) | 324 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 350 |
| BstNI | CCWGG | 1 cut(s) | 350 |
| BstPI | GGTNACC | 1 cut(s) | 232 |
| BstSCI | CCNGG | 5 cut(s) | 293, 294, 335, 336, 348 |
| BstUI | CGCG | 2 cut(s) | 380, 441 |
| BstV1I | GCAGC | 2 cut(s) | 176, 377 |
| BstV2I | GAAGAC | 1 cut(s) | 405 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BsuRI | GGCC | 3 cut(s) | 293, 353, 401 |
| BtgI | CCRYGG | 2 cut(s) | 281, 383 |
| BtrI | CACGTC | 1 cut(s) | 485 |
| BtsCI | GGATG | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 2 cut(s) | 346, 437 |
| CciI | TCATGA | 2 cut(s) | 169, 253 |
| CfoI | GCGC | 2 cut(s) | 382, 441 |
| Cfr10I | RCCGGY | 1 cut(s) | 263 |
| Cfr13I | GGNCC | 3 cut(s) | 97, 292, 352 |
| Cfr9I | CCCGGG | 2 cut(s) | 294, 336 |
| CseI | GACGC | 1 cut(s) | 386 |
| CspAI | ACCGGT | 1 cut(s) | 263 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 250, 285 |
| CviAII | CATG | 5 cut(s) | 125, 170, 182, 206, 254 |
| DpnI | GATC | 4 cut(s) | 186, 228, 246, 323 |
| DpnII | GATC | 4 cut(s) | 184, 226, 244, 321 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco24I | GRGCYC | 1 cut(s) | 330 |
| Eco31I | GGTCTC | 1 cut(s) | 207 |
| Eco32I | GATATC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 1 cut(s) | 97 |
| Eco88I | CYCGRG | 4 cut(s) | 294, 307, 336, 369 |
| Eco91I | GGTNACC | 1 cut(s) | 232 |
| EcoO65I | GGTNACC | 1 cut(s) | 232 |
| EcoRII | CCWGG | 1 cut(s) | 348 |
| EcoRV | GATATC | 1 cut(s) | 82 |
| EcoT38I | GRGCYC | 1 cut(s) | 330 |
| Esp3I | CGTCTC | 1 cut(s) | 369 |
| FaeI | CATG | 5 cut(s) | 128, 173, 185, 209, 257 |
| FaiI | YATR | 8 cut(s) | 75, 126, 171, 183, 207, 221, 255, 474 |
| FatI | CATG | 5 cut(s) | 124, 169, 181, 205, 253 |
| FauI | CCCGC | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 3 cut(s) | 165, 366, 421 |
| FokI | GGATG | 1 cut(s) | 353 |
| FriOI | GRGCYC | 1 cut(s) | 330 |
| Fsp4HI | GCNGC | 3 cut(s) | 165, 366, 421 |
| FspBI | CTAG | 6 cut(s) | 38, 129, 161, 188, 345, 417 |
| GlaI | GCGC | 2 cut(s) | 381, 440 |
| GluI | GCNGC | 3 cut(s) | 165, 366, 421 |
| HaeIII | GGCC | 3 cut(s) | 293, 353, 401 |
| HapII | CCGG | 3 cut(s) | 264, 295, 337 |
| HgaI | GACGC | 1 cut(s) | 386 |
| HhaI | GCGC | 2 cut(s) | 382, 441 |
| Hin1II | CATG | 5 cut(s) | 128, 173, 185, 209, 257 |
| Hin6I | GCGC | 2 cut(s) | 380, 439 |
| HinP1I | GCGC | 2 cut(s) | 380, 439 |
| HinfI | GANTC | 3 cut(s) | 173, 191, 257 |
| HpaII | CCGG | 3 cut(s) | 264, 295, 337 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 188, 254, 301 |
| Hpy99I | CGWCG | 1 cut(s) | 486 |
| HpyAV | CCTTC | 1 cut(s) | 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 285 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyCH4V | TGCA | 1 cut(s) | 179 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 350 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92II | CATG | 5 cut(s) | 128, 173, 185, 209, 257 |
| HspAI | GCGC | 2 cut(s) | 380, 439 |
| Kzo9I | GATC | 4 cut(s) | 184, 226, 244, 321 |
| LguI | GCTCTTC | 1 cut(s) | 11 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LpnPI | CCDG | 7 cut(s) | 215, 277, 308, 335, 350, 362, 415 |
| Lsp1109I | GCAGC | 2 cut(s) | 176, 377 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 6 cut(s) | 38, 129, 161, 188, 345, 417 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 3 cut(s) | 232, 298, 331 |
| MalI | GATC | 4 cut(s) | 186, 228, 246, 323 |
| MboI | GATC | 4 cut(s) | 184, 226, 244, 321 |
| MboII | GAAGA | 4 cut(s) | 28, 101, 149, 405 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MhlI | GDGCHC | 1 cut(s) | 330 |
| MluCI | AATT | 1 cut(s) | 25 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MnlI | CCTC | 3 cut(s) | 283, 309, 471 |
| MspI | CCGG | 3 cut(s) | 264, 295, 337 |
| MspR9I | CCNGG | 5 cut(s) | 295, 296, 337, 338, 350 |
| MunI | CAATTG | 1 cut(s) | 25 |
| MvaI | CCWGG | 1 cut(s) | 350 |
| MvnI | CGCG | 2 cut(s) | 380, 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 350 |
| NciI | CCSGG | 4 cut(s) | 295, 296, 337, 338 |
| NdeII | GATC | 4 cut(s) | 184, 226, 244, 321 |
| NheI | GCTAGC | 1 cut(s) | 344 |
| NlaIII | CATG | 5 cut(s) | 128, 173, 185, 209, 257 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| NmuCI | GTSAC | 3 cut(s) | 232, 298, 331 |
| PaeR7I | CTCGAG | 1 cut(s) | 307 |
| PagI | TCATGA | 2 cut(s) | 169, 253 |
| PciSI | GCTCTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 2 cut(s) | 173, 257 |
| PinAI | ACCGGT | 1 cut(s) | 263 |
| PkrI | GCNGC | 3 cut(s) | 166, 367, 422 |
| Ple19I | CGATCG | 1 cut(s) | 324 |
| PleI | GAGTC | 1 cut(s) | 185 |
| PpsI | GAGTC | 1 cut(s) | 185 |
| Psp6I | CCWGG | 1 cut(s) | 348 |
| PspEI | GGTNACC | 1 cut(s) | 232 |
| PspGI | CCWGG | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 3 cut(s) | 97, 292, 352 |
| PspXI | VCTCGAGB | 1 cut(s) | 307 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| PvuI | CGATCG | 1 cut(s) | 324 |
| SapI | GCTCTTC | 1 cut(s) | 11 |
| SatI | GCNGC | 3 cut(s) | 165, 366, 421 |
| Sau3AI | GATC | 4 cut(s) | 184, 226, 244, 321 |
| Sau96I | GGNCC | 3 cut(s) | 97, 292, 352 |
| SchI | GAGTC | 1 cut(s) | 185 |
| ScrFI | CCNGG | 5 cut(s) | 295, 296, 337, 338, 350 |
| SduI | GDGCHC | 1 cut(s) | 330 |
| SetI | ASST | 7 cut(s) | 39, 70, 119, 169, 320, 370, 487 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| Sfr274I | CTCGAG | 1 cut(s) | 307 |
| SgrAI | CRCCGGYG | 1 cut(s) | 263 |
| SinI | GGWCC | 1 cut(s) | 97 |
| SlaI | CTCGAG | 1 cut(s) | 307 |
| SmaI | CCCGGG | 2 cut(s) | 296, 338 |
| SmlI | CTYRAG | 1 cut(s) | 307 |
| SmoI | CTYRAG | 1 cut(s) | 307 |
| Sse9I | AATT | 1 cut(s) | 25 |
| SsiI | CCGC | 2 cut(s) | 420, 435 |
| SspMI | CTAG | 6 cut(s) | 38, 129, 161, 188, 345, 417 |
| StyD4I | CCNGG | 5 cut(s) | 293, 294, 335, 336, 348 |
| TaaI | ACNGT | 1 cut(s) | 285 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TaqI | TCGA | 3 cut(s) | 308, 320, 324 |
| TasI | AATT | 1 cut(s) | 25 |
| TauI | GCSGC | 1 cut(s) | 423 |
| TfiI | GAWTC | 2 cut(s) | 173, 257 |
| TseFI | GTSAC | 3 cut(s) | 232, 298, 331 |
| TseI | GCWGC | 2 cut(s) | 164, 365 |
| Tsp45I | GTSAC | 3 cut(s) | 232, 298, 331 |
| TspDTI | ATGAA | 2 cut(s) | 113, 242 |
| TspMI | CCCGGG | 2 cut(s) | 294, 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 97 |
| XbaI | TCTAGA | 1 cut(s) | 187 |
| XhoI | CTCGAG | 1 cut(s) | 307 |
| XmaI | CCCGGG | 2 cut(s) | 294, 336 |
| XspI | CTAG | 6 cut(s) | 38, 129, 161, 188, 345, 417 |