ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AciI | CCGC | 2 cut(s) | 149, 222 |
| AclWI | GGATC | 1 cut(s) | 377 |
| AfaI | GTAC | 2 cut(s) | 355, 384 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 199, 256, 311 |
| AflII | CTTAAG | 2 cut(s) | 31, 320 |
| AgsI | TTSAA | 3 cut(s) | 72, 395, 502 |
| AjnI | CCWGG | 1 cut(s) | 25 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| AluBI | AGCT | 2 cut(s) | 68, 290 |
| AluI | AGCT | 2 cut(s) | 68, 290 |
| Alw21I | GWGCWC | 1 cut(s) | 445 |
| AlwI | GGATC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 1 cut(s) | 476 |
| AsuC2I | CCSGG | 1 cut(s) | 258 |
| AsuHPI | GGTGA | 1 cut(s) | 52 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| Bbv12I | GWGCWC | 1 cut(s) | 445 |
| BbvI | GCAGC | 1 cut(s) | 463 |
| BccI | CCATC | 1 cut(s) | 329 |
| BciT130I | CCWGG | 1 cut(s) | 27 |
| BcnI | CCSGG | 1 cut(s) | 258 |
| BfaI | CTAG | 2 cut(s) | 228, 505 |
| BfmI | CTRYAG | 1 cut(s) | 309 |
| BfrI | CTTAAG | 2 cut(s) | 31, 320 |
| BisI | GCNGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 1 cut(s) | 478 |
| BmcAI | AGTACT | 1 cut(s) | 355 |
| Bme1390I | CCNGG | 2 cut(s) | 27, 258 |
| BmiI | GGNNCC | 2 cut(s) | 24, 300 |
| BmrFI | CCNGG | 2 cut(s) | 27, 258 |
| BpuMI | CCSGG | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 199, 256, 311 |
| Bse1I | ACTGG | 2 cut(s) | 51, 217 |
| BseBI | CCWGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 1 cut(s) | 293 |
| BseGI | GGATG | 2 cut(s) | 47, 340 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 199, 256, 311 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseNI | ACTGG | 2 cut(s) | 51, 217 |
| BseRI | GAGGAG | 2 cut(s) | 294, 435 |
| BseXI | GCAGC | 1 cut(s) | 463 |
| BseYI | CCCAGC | 1 cut(s) | 467 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 1 cut(s) | 445 |
| BsiSI | CCGG | 1 cut(s) | 257 |
| BslFI | GGGAC | 1 cut(s) | 252 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 199, 256, 311 |
| BsmFI | GGGAC | 1 cut(s) | 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 445 |
| Bsp143I | GATC | 2 cut(s) | 42, 369 |
| BspACI | CCGC | 2 cut(s) | 149, 222 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 24, 300 |
| BspPI | GGATC | 1 cut(s) | 377 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BspTI | CTTAAG | 2 cut(s) | 31, 320 |
| BsrI | ACTGG | 2 cut(s) | 51, 217 |
| BssECI | CCNNGG | 1 cut(s) | 293 |
| BssMI | GATC | 2 cut(s) | 42, 369 |
| BssT1I | CCWWGG | 1 cut(s) | 293 |
| Bst2UI | CCWGG | 1 cut(s) | 27 |
| Bst4CI | ACNGT | 2 cut(s) | 95, 353 |
| BstAFI | CTTAAG | 2 cut(s) | 31, 320 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 309 |
| BstF5I | GGATG | 2 cut(s) | 47, 340 |
| BstKTI | GATC | 2 cut(s) | 45, 372 |
| BstMBI | GATC | 2 cut(s) | 42, 369 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 420, 473, 482 |
| BstNI | CCWGG | 1 cut(s) | 27 |
| BstNSI | RCATGY | 2 cut(s) | 8, 483 |
| BstSCI | CCNGG | 2 cut(s) | 25, 256 |
| BstSFI | CTRYAG | 1 cut(s) | 309 |
| BstV1I | GCAGC | 1 cut(s) | 463 |
| BtsCI | GGATG | 2 cut(s) | 47, 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 91 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Csp6I | GTAC | 2 cut(s) | 354, 383 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 158, 193 |
| CviAII | CATG | 4 cut(s) | 5, 361, 386, 480 |
| CviJI | RGCY | 9 cut(s) | 30, 68, 290, 319, 400, 414, 461, 476, 491 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 68, 290, 319, 400, 414, 461, 476, 491 |
| CviQI | GTAC | 2 cut(s) | 354, 383 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 2 cut(s) | 44, 371 |
| DpnII | GATC | 2 cut(s) | 42, 369 |
| EciI | GGCGGA | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 309 |
| EcoRII | CCWGG | 1 cut(s) | 25 |
| EcoT14I | CCWWGG | 1 cut(s) | 293 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 293 |
| FaeI | CATG | 4 cut(s) | 8, 364, 389, 483 |
| FaiI | YATR | 8 cut(s) | 6, 11, 98, 145, 154, 362, 387, 481 |
| FaqI | GGGAC | 1 cut(s) | 252 |
| FatI | CATG | 4 cut(s) | 4, 360, 385, 479 |
| Fnu4HI | GCNGC | 1 cut(s) | 477 |
| FokI | GGATG | 2 cut(s) | 34, 347 |
| Fsp4HI | GCNGC | 1 cut(s) | 477 |
| FspBI | CTAG | 2 cut(s) | 228, 505 |
| GluI | GCNGC | 1 cut(s) | 477 |
| GsaI | CCCAGC | 1 cut(s) | 471 |
| HapII | CCGG | 1 cut(s) | 257 |
| Hin1II | CATG | 4 cut(s) | 8, 364, 389, 483 |
| HindIII | AAGCTT | 1 cut(s) | 66 |
| HinfI | GANTC | 2 cut(s) | 166, 265 |
| HpaII | CCGG | 1 cut(s) | 257 |
| HphI | GGTGA | 1 cut(s) | 52 |
| Hpy166II | GTNNAC | 1 cut(s) | 243 |
| Hpy188I | TCNGA | 1 cut(s) | 115 |
| Hpy188III | TCNNGA | 1 cut(s) | 332 |
| Hpy8I | GTNNAC | 1 cut(s) | 243 |
| HpyAV | CCTTC | 3 cut(s) | 260, 389, 466 |
| HpyCH4III | ACNGT | 2 cut(s) | 95, 353 |
| HpyCH4IV | ACGT | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 100, 423, 479 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 420, 473, 482 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| HpySE526I | ACGT | 1 cut(s) | 280 |
| Hsp92II | CATG | 4 cut(s) | 8, 364, 389, 483 |
| Kzo9I | GATC | 2 cut(s) | 42, 369 |
| LmnI | GCTCC | 3 cut(s) | 295, 338, 448 |
| LpnPI | CCDG | 9 cut(s) | 12, 39, 64, 230, 270, 297, 317, 420, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 463 |
| MaeI | CTAG | 2 cut(s) | 228, 505 |
| MaeII | ACGT | 1 cut(s) | 280 |
| MaeIII | GTNAC | 1 cut(s) | 56 |
| MalI | GATC | 2 cut(s) | 44, 371 |
| MboI | GATC | 2 cut(s) | 42, 369 |
| MboII | GAAGA | 3 cut(s) | 102, 122, 205 |
| MhlI | GDGCHC | 1 cut(s) | 445 |
| MluCI | AATT | 1 cut(s) | 453 |
| MlyI | GAGTC | 1 cut(s) | 274 |
| MnlI | CCTC | 9 cut(s) | 109, 156, 235, 256, 312, 315, 359, 451, 456 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 3 cut(s) | 14, 32, 321 |
| MspCI | CTTAAG | 2 cut(s) | 31, 320 |
| MspI | CCGG | 1 cut(s) | 257 |
| MspR9I | CCNGG | 2 cut(s) | 27, 258 |
| MvaI | CCWGG | 1 cut(s) | 27 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 420, 473, 482 |
| NciI | CCSGG | 1 cut(s) | 258 |
| NdeII | GATC | 2 cut(s) | 42, 369 |
| NlaIII | CATG | 4 cut(s) | 8, 364, 389, 483 |
| NlaIV | GGNNCC | 2 cut(s) | 24, 300 |
| NmuCI | GTSAC | 1 cut(s) | 56 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 8, 483 |
| PaeI | GCATGC | 1 cut(s) | 8 |
| PfeI | GAWTC | 1 cut(s) | 166 |
| PkrI | GCNGC | 1 cut(s) | 478 |
| PleI | GAGTC | 1 cut(s) | 273 |
| PpsI | GAGTC | 1 cut(s) | 273 |
| Psp6I | CCWGG | 1 cut(s) | 25 |
| PspFI | CCCAGC | 1 cut(s) | 467 |
| PspGI | CCWGG | 1 cut(s) | 25 |
| PspN4I | GGNNCC | 2 cut(s) | 24, 300 |
| RsaI | GTAC | 2 cut(s) | 355, 384 |
| RsaNI | GTAC | 2 cut(s) | 354, 383 |
| SaqAI | TTAA | 3 cut(s) | 14, 32, 321 |
| SatI | GCNGC | 1 cut(s) | 477 |
| Sau3AI | GATC | 2 cut(s) | 42, 369 |
| ScaI | AGTACT | 1 cut(s) | 355 |
| SchI | GAGTC | 1 cut(s) | 274 |
| ScrFI | CCNGG | 2 cut(s) | 27, 258 |
| SduI | GDGCHC | 1 cut(s) | 445 |
| SetI | ASST | 9 cut(s) | 24, 70, 120, 195, 248, 283, 292, 316, 439 |
| SfcI | CTRYAG | 1 cut(s) | 309 |
| SmlI | CTYRAG | 2 cut(s) | 31, 320 |
| SmoI | CTYRAG | 2 cut(s) | 31, 320 |
| SphI | GCATGC | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 453 |
| SsiI | CCGC | 2 cut(s) | 149, 222 |
| SspMI | CTAG | 2 cut(s) | 228, 505 |
| StyD4I | CCNGG | 2 cut(s) | 25, 256 |
| StyI | CCWWGG | 1 cut(s) | 293 |
| TaaI | ACNGT | 2 cut(s) | 95, 353 |
| TaiI | ACGT | 1 cut(s) | 283 |
| TasI | AATT | 1 cut(s) | 453 |
| TatI | WGTACW | 2 cut(s) | 353, 382 |
| TfiI | GAWTC | 1 cut(s) | 166 |
| Tru1I | TTAA | 3 cut(s) | 14, 32, 321 |
| Tru9I | TTAA | 3 cut(s) | 14, 32, 321 |
| TscAI | CASTG | 1 cut(s) | 98 |
| TseFI | GTSAC | 1 cut(s) | 56 |
| TseI | GCWGC | 1 cut(s) | 476 |
| Tsp45I | GTSAC | 1 cut(s) | 56 |
| TspRI | CASTG | 1 cut(s) | 98 |
| Vha464I | CTTAAG | 2 cut(s) | 31, 320 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 309 |
| XceI | RCATGY | 2 cut(s) | 8, 483 |
| XspI | CTAG | 2 cut(s) | 228, 505 |
| ZrmI | AGTACT | 1 cut(s) | 355 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |