Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 5 - 70 | 5.9e-07 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 101 |
| AluBI | AGCT | 2 cut(s) | 42, 107 |
| AluI | AGCT | 2 cut(s) | 42, 107 |
| AsuHPI | GGTGA | 2 cut(s) | 161, 179 |
| AsuII | TTCGAA | 1 cut(s) | 162 |
| BauI | CACGAG | 1 cut(s) | 198 |
| BfaI | CTAG | 1 cut(s) | 24 |
| Bpu10I | CCTNAGC | 1 cut(s) | 193 |
| Bpu14I | TTCGAA | 1 cut(s) | 162 |
| Bse3DI | GCAATG | 1 cut(s) | 18 |
| BseMI | GCAATG | 1 cut(s) | 18 |
| BsmI | GAATGC | 1 cut(s) | 193 |
| Bsp119I | TTCGAA | 1 cut(s) | 162 |
| BspACI | CCGC | 1 cut(s) | 101 |
| BspT104I | TTCGAA | 1 cut(s) | 162 |
| BsrDI | GCAATG | 1 cut(s) | 18 |
| BssSI | CACGAG | 1 cut(s) | 198 |
| Bst2BI | CACGAG | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstBI | TTCGAA | 1 cut(s) | 162 |
| BstDEI | CTNAG | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstNSI | RCATGY | 1 cut(s) | 95 |
| CviAII | CATG | 2 cut(s) | 74, 92 |
| CviJI | RGCY | 3 cut(s) | 42, 107, 120 |
| CviKI_1 | RGCY | 3 cut(s) | 42, 107, 120 |
| DdeI | CTNAG | 1 cut(s) | 193 |
| EciI | GGCGGA | 1 cut(s) | 116 |
| FaeI | CATG | 2 cut(s) | 77, 95 |
| FaiI | YATR | 8 cut(s) | 62, 66, 75, 93, 110, 112, 134, 179 |
| FatI | CATG | 2 cut(s) | 73, 91 |
| FspBI | CTAG | 1 cut(s) | 24 |
| Hin1II | CATG | 2 cut(s) | 77, 95 |
| HphI | GGTGA | 2 cut(s) | 161, 179 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 2 cut(s) | 79, 91 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 1 cut(s) | 193 |
| Hsp92II | CATG | 2 cut(s) | 77, 95 |
| LmnI | GCTCC | 1 cut(s) | 39 |
| MaeI | CTAG | 1 cut(s) | 24 |
| MboII | GAAGA | 1 cut(s) | 75 |
| MluCI | AATT | 1 cut(s) | 9 |
| MnlI | CCTC | 4 cut(s) | 81, 91, 202, 213 |
| Mva1269I | GAATGC | 1 cut(s) | 193 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NlaIII | CATG | 2 cut(s) | 77, 95 |
| NspI | RCATGY | 1 cut(s) | 95 |
| NspV | TTCGAA | 1 cut(s) | 162 |
| PctI | GAATGC | 1 cut(s) | 193 |
| SetI | ASST | 4 cut(s) | 44, 109, 169, 224 |
| SfuI | TTCGAA | 1 cut(s) | 162 |
| SgeI | CNNG | 8 cut(s) | 17, 36, 86, 104, 210, 212, 220, 231 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SsiI | CCGC | 1 cut(s) | 101 |
| SspMI | CTAG | 1 cut(s) | 24 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TaqI | TCGA | 2 cut(s) | 162, 218 |
| TasI | AATT | 1 cut(s) | 9 |
| XceI | RCATGY | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 24 |