Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 28 - 99 | 1.6e-06 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 330 |
| AccIII | TCCGGA | 1 cut(s) | 79 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AgsI | TTSAA | 5 cut(s) | 19, 164, 194, 251, 275 |
| AluBI | AGCT | 6 cut(s) | 39, 98, 146, 209, 221, 278 |
| AluI | AGCT | 6 cut(s) | 39, 98, 146, 209, 221, 278 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Aor13HI | TCCGGA | 1 cut(s) | 79 |
| AoxI | GGCC | 1 cut(s) | 152 |
| ApeKI | GCWGC | 2 cut(s) | 146, 209 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| BbvI | GCAGC | 2 cut(s) | 133, 196 |
| BccI | CCATC | 2 cut(s) | 17, 58 |
| BciVI | GTATCC | 1 cut(s) | 76 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 87, 150 |
| BfuI | GTATCC | 1 cut(s) | 76 |
| BisI | GCNGC | 2 cut(s) | 147, 210 |
| BlsI | GCNGC | 2 cut(s) | 148, 211 |
| BpmI | CTGGAG | 1 cut(s) | 55 |
| BsaI | GGTCTC | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| BsaWI | WCCGGW | 1 cut(s) | 79 |
| Bse1I | ACTGG | 1 cut(s) | 38 |
| BseAI | TCCGGA | 1 cut(s) | 79 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 108 |
| BseXI | GCAGC | 2 cut(s) | 133, 196 |
| BseYI | CCCAGC | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 154 |
| BsiSI | CCGG | 1 cut(s) | 80 |
| BslFI | GGGAC | 1 cut(s) | 157 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 154 |
| Bso31I | GGTCTC | 1 cut(s) | 32 |
| Bsp13I | TCCGGA | 1 cut(s) | 79 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| BspANI | GGCC | 1 cut(s) | 154 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspEI | TCCGGA | 1 cut(s) | 79 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspTNI | GGTCTC | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 38 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 2 cut(s) | 61, 260 |
| Bst6I | CTCTTC | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 1 cut(s) | 115 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 218 |
| BstV1I | GCAGC | 2 cut(s) | 133, 196 |
| BsuI | GTATCC | 1 cut(s) | 76 |
| BsuRI | GGCC | 1 cut(s) | 154 |
| BtsIMutI | CAGTG | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 1 cut(s) | 115 |
| CviAII | CATG | 2 cut(s) | 182, 233 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| Eam1104I | CTCTTC | 1 cut(s) | 85 |
| EarI | CTCTTC | 1 cut(s) | 85 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco147I | AGGCCT | 1 cut(s) | 154 |
| Eco31I | GGTCTC | 1 cut(s) | 32 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| FaeI | CATG | 2 cut(s) | 185, 236 |
| FaiI | YATR | 7 cut(s) | 123, 137, 170, 183, 234, 311, 337 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 82, 114 |
| FaqI | GGGAC | 1 cut(s) | 157 |
| FatI | CATG | 2 cut(s) | 181, 232 |
| FblI | GTMKAC | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 2 cut(s) | 147, 210 |
| Fsp4HI | GCNGC | 2 cut(s) | 147, 210 |
| FspBI | CTAG | 2 cut(s) | 87, 150 |
| GluI | GCNGC | 2 cut(s) | 147, 210 |
| GsaI | CCCAGC | 1 cut(s) | 48 |
| GsuI | CTGGAG | 1 cut(s) | 55 |
| HaeIII | GGCC | 1 cut(s) | 154 |
| HapII | CCGG | 1 cut(s) | 80 |
| Hin1II | CATG | 2 cut(s) | 185, 236 |
| HindIII | AAGCTT | 1 cut(s) | 276 |
| HinfI | GANTC | 2 cut(s) | 160, 190 |
| HpaII | CCGG | 1 cut(s) | 80 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 1 cut(s) | 143 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| Hpy99I | CGWCG | 1 cut(s) | 12 |
| HpyAV | CCTTC | 1 cut(s) | 232 |
| HpyCH4III | ACNGT | 2 cut(s) | 61, 260 |
| HpyCH4V | TGCA | 1 cut(s) | 212 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 218 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| Hsp92II | CATG | 2 cut(s) | 185, 236 |
| Kpn2I | TCCGGA | 1 cut(s) | 79 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 3 cut(s) | 36, 95, 143 |
| LpnPI | CCDG | 4 cut(s) | 19, 30, 93, 305 |
| Lsp1109I | GCAGC | 2 cut(s) | 133, 196 |
| MaeI | CTAG | 2 cut(s) | 87, 150 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MboII | GAAGA | 1 cut(s) | 102 |
| MmeI | TCCRAC | 1 cut(s) | 121 |
| MnlI | CCTC | 3 cut(s) | 86, 316, 319 |
| MroI | TCCGGA | 1 cut(s) | 79 |
| MseI | TTAA | 2 cut(s) | 50, 281 |
| MspI | CCGG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 218 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 2 cut(s) | 185, 236 |
| PceI | AGGCCT | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 160, 190 |
| PkrI | GCNGC | 2 cut(s) | 148, 211 |
| PspFI | CCCAGC | 1 cut(s) | 44 |
| SaqAI | TTAA | 2 cut(s) | 50, 281 |
| SatI | GCNGC | 2 cut(s) | 147, 210 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| SetI | ASST | 9 cut(s) | 41, 100, 148, 211, 223, 243, 280, 330, 336 |
| SseBI | AGGCCT | 1 cut(s) | 154 |
| SspMI | CTAG | 2 cut(s) | 87, 150 |
| StuI | AGGCCT | 1 cut(s) | 154 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaaI | ACNGT | 2 cut(s) | 61, 260 |
| TaqI | TCGA | 1 cut(s) | 7 |
| TfiI | GAWTC | 2 cut(s) | 160, 190 |
| Tru1I | TTAA | 2 cut(s) | 50, 281 |
| Tru9I | TTAA | 2 cut(s) | 50, 281 |
| TscAI | CASTG | 1 cut(s) | 38 |
| TseI | GCWGC | 2 cut(s) | 146, 209 |
| TspRI | CASTG | 1 cut(s) | 38 |
| XmiI | GTMKAC | 1 cut(s) | 330 |
| XspI | CTAG | 2 cut(s) | 87, 150 |