ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 215 |
| Acc36I | ACCTGC | 3 cut(s) | 215, 603, 677 |
| Acc65I | GGTACC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 1 cut(s) | 493 |
| AccI | GTMKAC | 2 cut(s) | 161, 1114 |
| AciI | CCGC | 1 cut(s) | 560 |
| AclWI | GGATC | 2 cut(s) | 479, 492 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 1 cut(s) | 989 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AfaI | GTAC | 6 cut(s) | 31, 83, 329, 341, 495, 753 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 282, 536, 1109 |
| AflII | CTTAAG | 1 cut(s) | 1058 |
| AflIII | ACRYGT | 1 cut(s) | 794 |
| AgsI | TTSAA | 6 cut(s) | 259, 299, 412, 883, 928, 1145 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1077 |
| AjnI | CCWGG | 2 cut(s) | 194, 1022 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 739, 771 |
| AluBI | AGCT | 3 cut(s) | 135, 953, 1057 |
| AluI | AGCT | 3 cut(s) | 135, 953, 1057 |
| Alw21I | GWGCWC | 1 cut(s) | 821 |
| Alw26I | GTCTC | 2 cut(s) | 763, 1090 |
| AlwI | GGATC | 2 cut(s) | 479, 492 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 604 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| AoxI | GGCC | 3 cut(s) | 273, 527, 920 |
| ApeKI | GCWGC | 1 cut(s) | 604 |
| ApoI | RAATTY | 1 cut(s) | 989 |
| AseI | ATTAAT | 1 cut(s) | 471 |
| Asp718I | GGTACC | 1 cut(s) | 493 |
| AspS9I | GGNCC | 2 cut(s) | 592, 920 |
| AsuHPI | GGTGA | 1 cut(s) | 557 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 592 |
| AxyI | CCTNAGG | 1 cut(s) | 534 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BamHI | GGATCC | 1 cut(s) | 484 |
| BanI | GGYRCC | 1 cut(s) | 493 |
| BanII | GRGCYC | 1 cut(s) | 805 |
| BbsI | GAAGAC | 2 cut(s) | 424, 1076 |
| Bbv12I | GWGCWC | 1 cut(s) | 821 |
| BbvI | GCAGC | 1 cut(s) | 591 |
| BccI | CCATC | 5 cut(s) | 371, 452, 695, 1007, 1127 |
| BceAI | ACGGC | 1 cut(s) | 907 |
| BciT130I | CCWGG | 2 cut(s) | 196, 1024 |
| BciVI | GTATCC | 1 cut(s) | 1144 |
| BcoDI | GTCTC | 2 cut(s) | 763, 1090 |
| BfaI | CTAG | 2 cut(s) | 810, 939 |
| BfmI | CTRYAG | 1 cut(s) | 596 |
| BfrI | CTTAAG | 1 cut(s) | 1058 |
| BfuAI | ACCTGC | 3 cut(s) | 215, 603, 677 |
| BfuI | GTATCC | 1 cut(s) | 1144 |
| BisI | GCNGC | 1 cut(s) | 605 |
| BlsI | GCNGC | 1 cut(s) | 606 |
| BmcAI | AGTACT | 1 cut(s) | 31 |
| Bme1390I | CCNGG | 2 cut(s) | 196, 1024 |
| Bme18I | GGWCC | 1 cut(s) | 592 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1077 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 2 cut(s) | 592, 920 |
| BmiI | GGNNCC | 3 cut(s) | 486, 495, 593 |
| BmrFI | CCNGG | 2 cut(s) | 196, 1024 |
| BmsI | GCATC | 1 cut(s) | 1028 |
| BpiI | GAAGAC | 2 cut(s) | 424, 1076 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 2 cut(s) | 195, 488 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 896, 926 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 282, 536, 1109 |
| Bse21I | CCTNAGG | 1 cut(s) | 534 |
| Bse3DI | GCAATG | 2 cut(s) | 127, 315 |
| BseBI | CCWGG | 2 cut(s) | 196, 1024 |
| BseDI | CCNNGG | 2 cut(s) | 195, 488 |
| BseGI | GGATG | 5 cut(s) | 175, 871, 1019, 1099, 1138 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 282, 536, 1109 |
| BseMI | GCAATG | 2 cut(s) | 127, 315 |
| BseMII | CTCAG | 1 cut(s) | 525 |
| BseXI | GCAGC | 1 cut(s) | 591 |
| BseYI | CCCAGC | 1 cut(s) | 644 |
| BshFI | GGCC | 3 cut(s) | 275, 529, 922 |
| BshNI | GGYRCC | 1 cut(s) | 493 |
| BsiHKAI | GWGCWC | 1 cut(s) | 821 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BsiSI | CCGG | 1 cut(s) | 36 |
| BsiWI | CGTACG | 1 cut(s) | 81 |
| BslFI | GGGAC | 2 cut(s) | 395, 605 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 282, 536, 1109 |
| BsmAI | GTCTC | 2 cut(s) | 763, 1090 |
| BsmFI | GGGAC | 2 cut(s) | 395, 605 |
| BsmI | GAATGC | 1 cut(s) | 226 |
| BsnI | GGCC | 3 cut(s) | 275, 529, 922 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp1286I | GDGCHC | 2 cut(s) | 805, 821 |
| Bsp1407I | TGTACA | 1 cut(s) | 327 |
| Bsp143I | GATC | 3 cut(s) | 484, 850, 972 |
| BspACI | CCGC | 1 cut(s) | 560 |
| BspANI | GGCC | 3 cut(s) | 275, 529, 922 |
| BspCNI | CTCAG | 1 cut(s) | 526 |
| BspLI | GGNNCC | 3 cut(s) | 486, 495, 593 |
| BspMAI | CTGCAG | 1 cut(s) | 600 |
| BspMI | ACCTGC | 3 cut(s) | 215, 603, 677 |
| BspPI | GGATC | 2 cut(s) | 479, 492 |
| BspT107I | GGYRCC | 1 cut(s) | 493 |
| BspTI | CTTAAG | 1 cut(s) | 1058 |
| BsrDI | GCAATG | 2 cut(s) | 127, 315 |
| BsrGI | TGTACA | 1 cut(s) | 327 |
| BssECI | CCNNGG | 2 cut(s) | 195, 488 |
| BssMI | GATC | 3 cut(s) | 484, 850, 972 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssT1I | CCWWGG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 2 cut(s) | 196, 1024 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstAFI | CTTAAG | 1 cut(s) | 1058 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 604 |
| BstAUI | TGTACA | 1 cut(s) | 327 |
| BstC8I | GCNNGC | 5 cut(s) | 192, 366, 674, 678, 732 |
| BstDEI | CTNAG | 3 cut(s) | 534, 656, 957 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 5 cut(s) | 175, 871, 1019, 1099, 1138 |
| BstKTI | GATC | 3 cut(s) | 487, 853, 975 |
| BstMAI | GTCTC | 2 cut(s) | 763, 1090 |
| BstMBI | GATC | 3 cut(s) | 484, 850, 972 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| BstNI | CCWGG | 2 cut(s) | 196, 1024 |
| BstNSI | RCATGY | 4 cut(s) | 368, 676, 680, 734 |
| BstSCI | CCNGG | 2 cut(s) | 194, 1022 |
| BstSFI | CTRYAG | 1 cut(s) | 596 |
| BstV1I | GCAGC | 1 cut(s) | 591 |
| BstV2I | GAAGAC | 2 cut(s) | 424, 1076 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 798 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| Bsu36I | CCTNAGG | 1 cut(s) | 534 |
| BsuI | GTATCC | 1 cut(s) | 1144 |
| BsuRI | GGCC | 3 cut(s) | 275, 529, 922 |
| BtsCI | GGATG | 5 cut(s) | 175, 871, 1019, 1099, 1138 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| BveI | ACCTGC | 3 cut(s) | 215, 603, 677 |
| Cac8I | GCNNGC | 5 cut(s) | 192, 366, 674, 678, 732 |
| CaiI | CAGNNNCTG | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 2 cut(s) | 592, 920 |
| CseI | GACGC | 2 cut(s) | 392, 596 |
| Csp6I | GTAC | 6 cut(s) | 30, 82, 328, 340, 494, 752 |
| CviAII | CATG | 6 cut(s) | 365, 673, 677, 695, 731, 1082 |
| CviQI | GTAC | 6 cut(s) | 30, 82, 328, 340, 494, 752 |
| DdeI | CTNAG | 3 cut(s) | 534, 656, 957 |
| DpnI | GATC | 3 cut(s) | 486, 852, 974 |
| DpnII | GATC | 3 cut(s) | 484, 850, 972 |
| DraI | TTTAAA | 2 cut(s) | 514, 777 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1077 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1077 |
| EciI | GGCGGA | 1 cut(s) | 575 |
| Eco130I | CCWWGG | 1 cut(s) | 488 |
| Eco24I | GRGCYC | 1 cut(s) | 805 |
| Eco47I | GGWCC | 1 cut(s) | 592 |
| Eco81I | CCTNAGG | 1 cut(s) | 534 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 53 |
| EcoO109I | RGGNCCY | 1 cut(s) | 592 |
| EcoRII | CCWGG | 2 cut(s) | 194, 1022 |
| EcoT14I | CCWWGG | 1 cut(s) | 488 |
| EcoT22I | ATGCAT | 3 cut(s) | 132, 366, 678 |
| EcoT38I | GRGCYC | 1 cut(s) | 805 |
| ErhI | CCWWGG | 1 cut(s) | 488 |
| FaeI | CATG | 6 cut(s) | 368, 676, 680, 698, 734, 1085 |
| FaqI | GGGAC | 2 cut(s) | 395, 605 |
| FatI | CATG | 6 cut(s) | 364, 672, 676, 694, 730, 1081 |
| FblI | GTMKAC | 2 cut(s) | 161, 1114 |
| Fnu4HI | GCNGC | 1 cut(s) | 605 |
| FokI | GGATG | 5 cut(s) | 182, 878, 1006, 1086, 1145 |
| FriOI | GRGCYC | 1 cut(s) | 805 |
| Fsp4HI | GCNGC | 1 cut(s) | 605 |
| FspBI | CTAG | 2 cut(s) | 810, 939 |
| GluI | GCNGC | 1 cut(s) | 605 |
| GsaI | CCCAGC | 1 cut(s) | 648 |
| HaeIII | GGCC | 3 cut(s) | 275, 529, 922 |
| HapII | CCGG | 1 cut(s) | 36 |
| HgaI | GACGC | 2 cut(s) | 392, 596 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin1II | CATG | 6 cut(s) | 368, 676, 680, 698, 734, 1085 |
| HindIII | AAGCTT | 1 cut(s) | 1055 |
| HinfI | GANTC | 6 cut(s) | 181, 231, 308, 649, 1048, 1087 |
| HpaII | CCGG | 1 cut(s) | 36 |
| HphI | GGTGA | 1 cut(s) | 557 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 230, 618, 1115 |
| Hpy188I | TCNGA | 2 cut(s) | 242, 829 |
| Hpy188III | TCNNGA | 4 cut(s) | 533, 854, 976, 1031 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 230, 618, 1115 |
| HpyAV | CCTTC | 1 cut(s) | 973 |
| HpyCH4IV | ACGT | 5 cut(s) | 80, 84, 754, 796, 1078 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| HpyF3I | CTNAG | 3 cut(s) | 534, 656, 957 |
| HpySE526I | ACGT | 5 cut(s) | 80, 84, 754, 796, 1078 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| Hsp92II | CATG | 6 cut(s) | 368, 676, 680, 698, 734, 1085 |
| KpnI | GGTACC | 1 cut(s) | 497 |
| Kzo9I | GATC | 3 cut(s) | 484, 850, 972 |
| LmnI | GCTCC | 1 cut(s) | 958 |
| Lsp1109I | GCAGC | 1 cut(s) | 591 |
| LweI | GCATC | 1 cut(s) | 1028 |
| MaeI | CTAG | 2 cut(s) | 810, 939 |
| MaeII | ACGT | 5 cut(s) | 80, 84, 754, 796, 1078 |
| MaeIII | GTNAC | 3 cut(s) | 305, 545, 1084 |
| MalI | GATC | 3 cut(s) | 486, 852, 974 |
| MboI | GATC | 3 cut(s) | 484, 850, 972 |
| MboII | GAAGA | 4 cut(s) | 429, 871, 1057, 1081 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MhlI | GDGCHC | 2 cut(s) | 805, 821 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluCI | AATT | 9 cut(s) | 51, 203, 254, 291, 323, 783, 886, 893, 989 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MlyI | GAGTC | 3 cut(s) | 225, 302, 1081 |
| MmeI | TCCRAC | 3 cut(s) | 101, 815, 1073 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| Mph1103I | ATGCAT | 3 cut(s) | 132, 366, 678 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 9 cut(s) | 54, 137, 471, 507, 513, 776, 993, 1059, 1125 |
| MslI | CAYNNNNRTG | 2 cut(s) | 473, 699 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspCI | CTTAAG | 1 cut(s) | 1058 |
| MspI | CCGG | 1 cut(s) | 36 |
| MspR9I | CCNGG | 2 cut(s) | 196, 1024 |
| Mva1269I | GAATGC | 1 cut(s) | 226 |
| MvaI | CCWGG | 2 cut(s) | 196, 1024 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 272, 392, 604 |
| NdeII | GATC | 3 cut(s) | 484, 850, 972 |
| NlaIII | CATG | 6 cut(s) | 368, 676, 680, 698, 734, 1085 |
| NlaIV | GGNNCC | 3 cut(s) | 486, 495, 593 |
| NmeAIII | GCCGAG | 1 cut(s) | 505 |
| NmuCI | GTSAC | 3 cut(s) | 305, 545, 1084 |
| NsiI | ATGCAT | 3 cut(s) | 132, 366, 678 |
| NspI | RCATGY | 4 cut(s) | 368, 676, 680, 734 |
| PaeI | GCATGC | 4 cut(s) | 368, 676, 680, 734 |
| PaqCI | CACCTGC | 1 cut(s) | 215 |
| PctI | GAATGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 3 cut(s) | 181, 649, 1048 |
| Pfl23II | CGTACG | 1 cut(s) | 81 |
| PkrI | GCNGC | 1 cut(s) | 606 |
| PleI | GAGTC | 3 cut(s) | 225, 302, 1081 |
| PpsI | GAGTC | 3 cut(s) | 225, 302, 1081 |
| PpuMI | RGGWCCY | 1 cut(s) | 592 |
| PshBI | ATTAAT | 1 cut(s) | 471 |
| Psp5II | RGGWCCY | 1 cut(s) | 592 |
| Psp6I | CCWGG | 2 cut(s) | 194, 1022 |
| PspFI | CCCAGC | 1 cut(s) | 644 |
| PspGI | CCWGG | 2 cut(s) | 194, 1022 |
| PspLI | CGTACG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 3 cut(s) | 486, 495, 593 |
| PspPI | GGNCC | 2 cut(s) | 592, 920 |
| PspPPI | RGGWCCY | 1 cut(s) | 592 |
| PstI | CTGCAG | 1 cut(s) | 600 |
| PstNI | CAGNNNCTG | 1 cut(s) | 604 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 6 cut(s) | 31, 83, 329, 341, 495, 753 |
| RsaNI | GTAC | 6 cut(s) | 30, 82, 328, 340, 494, 752 |
| RseI | CAYNNNNRTG | 2 cut(s) | 473, 699 |
| SaqAI | TTAA | 9 cut(s) | 54, 137, 471, 507, 513, 776, 993, 1059, 1125 |
| SatI | GCNGC | 1 cut(s) | 605 |
| Sau3AI | GATC | 3 cut(s) | 484, 850, 972 |
| Sau96I | GGNCC | 2 cut(s) | 592, 920 |
| ScaI | AGTACT | 1 cut(s) | 31 |
| SchI | GAGTC | 3 cut(s) | 225, 302, 1081 |
| ScrFI | CCNGG | 2 cut(s) | 196, 1024 |
| SduI | GDGCHC | 2 cut(s) | 805, 821 |
| SfaNI | GCATC | 1 cut(s) | 1028 |
| SfcI | CTRYAG | 1 cut(s) | 596 |
| SinI | GGWCC | 1 cut(s) | 592 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 473, 699 |
| SmlI | CTYRAG | 2 cut(s) | 14, 1058 |
| SmoI | CTYRAG | 2 cut(s) | 14, 1058 |
| SphI | GCATGC | 4 cut(s) | 368, 676, 680, 734 |
| Sse9I | AATT | 9 cut(s) | 51, 203, 254, 291, 323, 783, 886, 893, 989 |
| SsiI | CCGC | 1 cut(s) | 560 |
| SspMI | CTAG | 2 cut(s) | 810, 939 |
| StyD4I | CCNGG | 2 cut(s) | 194, 1022 |
| StyI | CCWWGG | 1 cut(s) | 488 |
| TaiI | ACGT | 5 cut(s) | 83, 87, 757, 799, 1081 |
| TaqII | GACCGA | 1 cut(s) | 924 |
| TasI | AATT | 9 cut(s) | 51, 203, 254, 291, 323, 783, 886, 893, 989 |
| TatI | WGTACW | 2 cut(s) | 29, 327 |
| TfiI | GAWTC | 3 cut(s) | 181, 649, 1048 |
| Tru1I | TTAA | 9 cut(s) | 54, 137, 471, 507, 513, 776, 993, 1059, 1125 |
| Tru9I | TTAA | 9 cut(s) | 54, 137, 471, 507, 513, 776, 993, 1059, 1125 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseFI | GTSAC | 3 cut(s) | 305, 545, 1084 |
| TseI | GCWGC | 1 cut(s) | 604 |
| Tsp45I | GTSAC | 3 cut(s) | 305, 545, 1084 |
| TspDTI | ATGAA | 4 cut(s) | 17, 138, 173, 591 |
| TspGWI | ACGGA | 2 cut(s) | 179, 635 |
| TspRI | CASTG | 1 cut(s) | 358 |
| Vha464I | CTTAAG | 1 cut(s) | 1058 |
| VpaK11BI | GGWCC | 1 cut(s) | 592 |
| VspI | ATTAAT | 1 cut(s) | 471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 53 |
| XapI | RAATTY | 1 cut(s) | 989 |
| XceI | RCATGY | 4 cut(s) | 368, 676, 680, 734 |
| XmiI | GTMKAC | 2 cut(s) | 161, 1114 |
| XspI | CTAG | 2 cut(s) | 810, 939 |
| ZrmI | AGTACT | 1 cut(s) | 31 |
| Zsp2I | ATGCAT | 3 cut(s) | 132, 366, 678 |