Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 73 |
| Acc36I | ACCTGC | 1 cut(s) | 73 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 267 |
| AccBSI | CCGCTC | 1 cut(s) | 457 |
| AciI | CCGC | 2 cut(s) | 367, 457 |
| AcuI | CTGAAG | 1 cut(s) | 203 |
| AfaI | GTAC | 2 cut(s) | 141, 240 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 267, 293, 438 |
| AgsI | TTSAA | 1 cut(s) | 328 |
| AjnI | CCWGG | 2 cut(s) | 289, 416 |
| AluBI | AGCT | 1 cut(s) | 223 |
| AluI | AGCT | 1 cut(s) | 223 |
| AoxI | GGCC | 4 cut(s) | 254, 321, 330, 446 |
| ApeKI | GCWGC | 1 cut(s) | 79 |
| AspS9I | GGNCC | 1 cut(s) | 321 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| BbsI | GAAGAC | 1 cut(s) | 85 |
| BbvCI | CCTCAGC | 1 cut(s) | 443 |
| BbvI | GCAGC | 1 cut(s) | 91 |
| BccI | CCATC | 1 cut(s) | 311 |
| BciT130I | CCWGG | 2 cut(s) | 291, 418 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BfuAI | ACCTGC | 1 cut(s) | 73 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 329 |
| BisI | GCNGC | 2 cut(s) | 80, 458 |
| BlsI | GCNGC | 2 cut(s) | 81, 459 |
| Bme1390I | CCNGG | 2 cut(s) | 291, 418 |
| BmgT120I | GGNCC | 1 cut(s) | 321 |
| BmiI | GGNNCC | 2 cut(s) | 20, 322 |
| BmrFI | CCNGG | 2 cut(s) | 291, 418 |
| BpiI | GAAGAC | 1 cut(s) | 85 |
| Bpu10I | CCTNAGC | 1 cut(s) | 443 |
| Bsa29I | ATCGAT | 1 cut(s) | 406 |
| BsaAI | YACGTR | 1 cut(s) | 180 |
| BsaBI | GATNNNNATC | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 2 cut(s) | 289, 417 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 348, 378 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 267, 293, 438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 159 |
| BseBI | CCWGG | 2 cut(s) | 291, 418 |
| BseCI | ATCGAT | 1 cut(s) | 406 |
| BseDI | CCNNGG | 2 cut(s) | 289, 417 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseJI | GATNNNNATC | 1 cut(s) | 159 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 267, 293, 438 |
| BseMII | CTCAG | 1 cut(s) | 434 |
| BseXI | GCAGC | 1 cut(s) | 91 |
| BshFI | GGCC | 4 cut(s) | 256, 323, 332, 448 |
| BshVI | ATCGAT | 1 cut(s) | 406 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 267, 293, 438 |
| BsnI | GGCC | 4 cut(s) | 256, 323, 332, 448 |
| Bsp143I | GATC | 1 cut(s) | 212 |
| BspACI | CCGC | 2 cut(s) | 367, 457 |
| BspANI | GGCC | 4 cut(s) | 256, 323, 332, 448 |
| BspCNI | CTCAG | 1 cut(s) | 435 |
| BspDI | ATCGAT | 1 cut(s) | 406 |
| BspLI | GGNNCC | 2 cut(s) | 20, 322 |
| BspMI | ACCTGC | 1 cut(s) | 73 |
| BsrBI | CCGCTC | 1 cut(s) | 457 |
| BssECI | CCNNGG | 2 cut(s) | 289, 417 |
| BssMI | GATC | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 418 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| BstBAI | YACGTR | 1 cut(s) | 180 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 171 |
| BstDEI | CTNAG | 1 cut(s) | 443 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstKTI | GATC | 1 cut(s) | 215 |
| BstMBI | GATC | 1 cut(s) | 212 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 329, 454 |
| BstNI | CCWGG | 2 cut(s) | 291, 418 |
| BstNSI | RCATGY | 1 cut(s) | 173 |
| BstSCI | CCNGG | 2 cut(s) | 289, 416 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstV1I | GCAGC | 1 cut(s) | 91 |
| BstV2I | GAAGAC | 1 cut(s) | 85 |
| Bsu15I | ATCGAT | 1 cut(s) | 406 |
| BsuRI | GGCC | 4 cut(s) | 256, 323, 332, 448 |
| BsuTUI | ATCGAT | 1 cut(s) | 406 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| BtsIMutI | CAGTG | 1 cut(s) | 441 |
| BveI | ACCTGC | 1 cut(s) | 73 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 171 |
| Cfr13I | GGNCC | 1 cut(s) | 321 |
| ClaI | ATCGAT | 1 cut(s) | 406 |
| Csp6I | GTAC | 2 cut(s) | 140, 239 |
| CviAII | CATG | 4 cut(s) | 23, 100, 166, 170 |
| CviJI | RGCY | 9 cut(s) | 185, 223, 256, 301, 323, 332, 382, 442, 448 |
| CviKI_1 | RGCY | 9 cut(s) | 185, 223, 256, 301, 323, 332, 382, 442, 448 |
| CviQI | GTAC | 2 cut(s) | 140, 239 |
| DdeI | CTNAG | 1 cut(s) | 443 |
| DpnI | GATC | 1 cut(s) | 214 |
| DpnII | GATC | 1 cut(s) | 212 |
| Eco147I | AGGCCT | 2 cut(s) | 256, 448 |
| Eco32I | GATATC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 1 cut(s) | 203 |
| EcoO109I | RGGNCCY | 1 cut(s) | 321 |
| EcoRII | CCWGG | 2 cut(s) | 289, 416 |
| EcoRV | GATATC | 1 cut(s) | 410 |
| EcoT22I | ATGCAT | 1 cut(s) | 171 |
| FaeI | CATG | 4 cut(s) | 26, 103, 169, 173 |
| FaiI | YATR | 6 cut(s) | 24, 101, 167, 171, 188, 314 |
| FatI | CATG | 4 cut(s) | 22, 99, 165, 169 |
| FauI | CCCGC | 1 cut(s) | 360 |
| Fnu4HI | GCNGC | 2 cut(s) | 80, 458 |
| FokI | GGATG | 1 cut(s) | 383 |
| Fsp4HI | GCNGC | 2 cut(s) | 80, 458 |
| FspBI | CTAG | 1 cut(s) | 15 |
| GluI | GCNGC | 2 cut(s) | 80, 458 |
| HaeIII | GGCC | 4 cut(s) | 256, 323, 332, 448 |
| Hin1II | CATG | 4 cut(s) | 26, 103, 169, 173 |
| HphI | GGTGA | 1 cut(s) | 97 |
| HpyAV | CCTTC | 3 cut(s) | 227, 334, 337 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4IV | ACGT | 2 cut(s) | 32, 179 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 169, 173, 190 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 329, 454 |
| HpyF3I | CTNAG | 1 cut(s) | 443 |
| HpySE526I | ACGT | 2 cut(s) | 32, 179 |
| Hsp92II | CATG | 4 cut(s) | 26, 103, 169, 173 |
| Kzo9I | GATC | 1 cut(s) | 212 |
| LmnI | GCTCC | 1 cut(s) | 108 |
| LpnPI | CCDG | 7 cut(s) | 68, 209, 276, 303, 403, 430, 462 |
| Lsp1109I | GCAGC | 1 cut(s) | 91 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MaeII | ACGT | 2 cut(s) | 32, 179 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 1 cut(s) | 214 |
| MbiI | CCGCTC | 1 cut(s) | 457 |
| MboI | GATC | 1 cut(s) | 212 |
| MboII | GAAGA | 2 cut(s) | 85, 88 |
| MluCI | AATT | 1 cut(s) | 305 |
| MnlI | CCTC | 3 cut(s) | 120, 432, 438 |
| Mph1103I | ATGCAT | 1 cut(s) | 171 |
| MseI | TTAA | 6 cut(s) | 39, 72, 159, 264, 303, 308 |
| MspA1I | CMGCKG | 1 cut(s) | 223 |
| MspR9I | CCNGG | 2 cut(s) | 291, 418 |
| MvaI | CCWGG | 2 cut(s) | 291, 418 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 329, 454 |
| NdeII | GATC | 1 cut(s) | 212 |
| NlaIII | CATG | 4 cut(s) | 26, 103, 169, 173 |
| NlaIV | GGNNCC | 2 cut(s) | 20, 322 |
| NsiI | ATGCAT | 1 cut(s) | 171 |
| NspI | RCATGY | 1 cut(s) | 173 |
| PaeI | GCATGC | 1 cut(s) | 173 |
| PaqCI | CACCTGC | 1 cut(s) | 73 |
| PceI | AGGCCT | 2 cut(s) | 256, 448 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 267 |
| PkrI | GCNGC | 2 cut(s) | 81, 459 |
| Ppu21I | YACGTR | 1 cut(s) | 180 |
| Psp6I | CCWGG | 2 cut(s) | 289, 416 |
| PspGI | CCWGG | 2 cut(s) | 289, 416 |
| PspN4I | GGNNCC | 2 cut(s) | 20, 322 |
| PspPI | GGNCC | 1 cut(s) | 321 |
| PvuII | CAGCTG | 1 cut(s) | 223 |
| RsaI | GTAC | 2 cut(s) | 141, 240 |
| RsaNI | GTAC | 2 cut(s) | 140, 239 |
| SaqAI | TTAA | 6 cut(s) | 39, 72, 159, 264, 303, 308 |
| SatI | GCNGC | 2 cut(s) | 80, 458 |
| Sau3AI | GATC | 1 cut(s) | 212 |
| Sau96I | GGNCC | 1 cut(s) | 321 |
| ScrFI | CCNGG | 2 cut(s) | 291, 418 |
| SetI | ASST | 6 cut(s) | 35, 67, 87, 182, 225, 419 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 329 |
| SphI | GCATGC | 1 cut(s) | 173 |
| Sse9I | AATT | 1 cut(s) | 305 |
| SseBI | AGGCCT | 2 cut(s) | 256, 448 |
| SsiI | CCGC | 2 cut(s) | 367, 457 |
| SspMI | CTAG | 1 cut(s) | 15 |
| StuI | AGGCCT | 2 cut(s) | 256, 448 |
| StyD4I | CCNGG | 2 cut(s) | 289, 416 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaiI | ACGT | 2 cut(s) | 35, 182 |
| TaqI | TCGA | 1 cut(s) | 406 |
| TasI | AATT | 1 cut(s) | 305 |
| TauI | GCSGC | 1 cut(s) | 460 |
| Tru1I | TTAA | 6 cut(s) | 39, 72, 159, 264, 303, 308 |
| Tru9I | TTAA | 6 cut(s) | 39, 72, 159, 264, 303, 308 |
| TscAI | CASTG | 1 cut(s) | 441 |
| TseI | GCWGC | 1 cut(s) | 79 |
| TspDTI | ATGAA | 2 cut(s) | 88, 216 |
| TspGWI | ACGGA | 1 cut(s) | 157 |
| TspRI | CASTG | 1 cut(s) | 441 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 267 |
| XceI | RCATGY | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 15 |
| Zsp2I | ATGCAT | 1 cut(s) | 171 |