Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 404 |
| AarI | CACCTGC | 1 cut(s) | 220 |
| Acc36I | ACCTGC | 1 cut(s) | 220 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 128 |
| AciI | CCGC | 4 cut(s) | 34, 40, 664, 677 |
| AclWI | GGATC | 1 cut(s) | 371 |
| AcoI | YGGCCR | 2 cut(s) | 327, 665 |
| AcsI | RAATTY | 3 cut(s) | 140, 539, 634 |
| AfaI | GTAC | 3 cut(s) | 24, 98, 261 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 533 |
| AgsI | TTSAA | 1 cut(s) | 65 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AluBI | AGCT | 1 cut(s) | 92 |
| AluI | AGCT | 1 cut(s) | 92 |
| Alw26I | GTCTC | 1 cut(s) | 540 |
| AlwI | GGATC | 1 cut(s) | 371 |
| AoxI | GGCC | 5 cut(s) | 6, 327, 386, 524, 665 |
| ApeKI | GCWGC | 3 cut(s) | 503, 658, 661 |
| ApoI | RAATTY | 3 cut(s) | 140, 539, 634 |
| AspLEI | GCGC | 1 cut(s) | 682 |
| AspS9I | GGNCC | 1 cut(s) | 524 |
| AsuC2I | CCSGG | 1 cut(s) | 254 |
| AsuHPI | GGTGA | 3 cut(s) | 65, 201, 421 |
| BalI | TGGCCA | 1 cut(s) | 329 |
| BanII | GRGCYC | 1 cut(s) | 373 |
| BbvI | GCAGC | 3 cut(s) | 515, 670, 673 |
| BccI | CCATC | 3 cut(s) | 118, 343, 690 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BcnI | CCSGG | 1 cut(s) | 254 |
| BcoDI | GTCTC | 1 cut(s) | 540 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BfmI | CTRYAG | 2 cut(s) | 213, 701 |
| BfoI | RGCGCY | 1 cut(s) | 683 |
| BfuAI | ACCTGC | 1 cut(s) | 220 |
| BisI | GCNGC | 5 cut(s) | 504, 659, 662, 665, 678 |
| BlpI | GCTNAGC | 1 cut(s) | 486 |
| BlsI | GCNGC | 5 cut(s) | 505, 660, 663, 666, 679 |
| Bme1390I | CCNGG | 2 cut(s) | 254, 528 |
| BmgT120I | GGNCC | 1 cut(s) | 524 |
| BmiI | GGNNCC | 1 cut(s) | 372 |
| BmrFI | CCNGG | 2 cut(s) | 254, 528 |
| BmrI | ACTGGG | 1 cut(s) | 187 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BmuI | ACTGGG | 1 cut(s) | 187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 486 |
| BpuMI | CCSGG | 1 cut(s) | 254 |
| BsaBI | GATNNNNATC | 2 cut(s) | 65, 109 |
| BsaJI | CCNNGG | 3 cut(s) | 330, 527, 579 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 533 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| Bse3DI | GCAATG | 1 cut(s) | 144 |
| Bse8I | GATNNNNATC | 2 cut(s) | 65, 109 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 3 cut(s) | 330, 527, 579 |
| BseGI | GGATG | 3 cut(s) | 110, 354, 701 |
| BseJI | GATNNNNATC | 2 cut(s) | 65, 109 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 533 |
| BseMI | GCAATG | 1 cut(s) | 144 |
| BseMII | CTCAG | 5 cut(s) | 141, 236, 500, 663, 677 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseRI | GAGGAG | 1 cut(s) | 108 |
| BseXI | GCAGC | 3 cut(s) | 515, 670, 673 |
| BsgI | GTGCAG | 1 cut(s) | 522 |
| BshFI | GGCC | 5 cut(s) | 8, 329, 388, 526, 667 |
| BsiSI | CCGG | 1 cut(s) | 253 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 533 |
| BsmAI | GTCTC | 1 cut(s) | 540 |
| BsnI | GGCC | 5 cut(s) | 8, 329, 388, 526, 667 |
| Bsp1286I | GDGCHC | 1 cut(s) | 373 |
| Bsp143I | GATC | 1 cut(s) | 376 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 486 |
| BspACI | CCGC | 4 cut(s) | 34, 40, 664, 677 |
| BspANI | GGCC | 5 cut(s) | 8, 329, 388, 526, 667 |
| BspCNI | CTCAG | 5 cut(s) | 142, 237, 499, 664, 678 |
| BspLI | GGNNCC | 1 cut(s) | 372 |
| BspMAI | CTGCAG | 1 cut(s) | 217 |
| BspMI | ACCTGC | 1 cut(s) | 220 |
| BspPI | GGATC | 1 cut(s) | 371 |
| BsrDI | GCAATG | 1 cut(s) | 144 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssECI | CCNNGG | 3 cut(s) | 330, 527, 579 |
| BssMI | GATC | 1 cut(s) | 376 |
| BssT1I | CCWWGG | 2 cut(s) | 330, 579 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 1 cut(s) | 588 |
| BstC8I | GCNNGC | 1 cut(s) | 32 |
| BstDEI | CTNAG | 7 cut(s) | 93, 150, 245, 486, 594, 672, 686 |
| BstF5I | GGATG | 3 cut(s) | 110, 354, 701 |
| BstH2I | RGCGCY | 1 cut(s) | 683 |
| BstHHI | GCGC | 1 cut(s) | 682 |
| BstKTI | GATC | 1 cut(s) | 379 |
| BstMAI | GTCTC | 1 cut(s) | 540 |
| BstMBI | GATC | 1 cut(s) | 376 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 277, 664 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstSCI | CCNGG | 2 cut(s) | 252, 526 |
| BstSFI | CTRYAG | 2 cut(s) | 213, 701 |
| BstV1I | GCAGC | 3 cut(s) | 515, 670, 673 |
| BsuRI | GGCC | 5 cut(s) | 8, 329, 388, 526, 667 |
| BtsCI | GGATG | 3 cut(s) | 110, 354, 701 |
| BtsIMutI | CAGTG | 1 cut(s) | 242 |
| BveI | ACCTGC | 1 cut(s) | 220 |
| Cac8I | GCNNGC | 1 cut(s) | 32 |
| CfoI | GCGC | 1 cut(s) | 682 |
| Cfr13I | GGNCC | 1 cut(s) | 524 |
| Csp6I | GTAC | 3 cut(s) | 23, 97, 260 |
| CviAII | CATG | 2 cut(s) | 293, 446 |
| CviQI | GTAC | 3 cut(s) | 23, 97, 260 |
| DdeI | CTNAG | 7 cut(s) | 93, 150, 245, 486, 594, 672, 686 |
| DpnI | GATC | 1 cut(s) | 378 |
| DpnII | GATC | 1 cut(s) | 376 |
| EaeI | YGGCCR | 2 cut(s) | 327, 665 |
| Eco130I | CCWWGG | 2 cut(s) | 330, 579 |
| Eco24I | GRGCYC | 1 cut(s) | 373 |
| EcoO109I | RGGNCCY | 1 cut(s) | 524 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 2 cut(s) | 330, 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 373 |
| ErhI | CCWWGG | 2 cut(s) | 330, 579 |
| FaeI | CATG | 2 cut(s) | 296, 449 |
| FatI | CATG | 2 cut(s) | 292, 445 |
| FauI | CCCGC | 1 cut(s) | 33 |
| FauNDI | CATATG | 1 cut(s) | 481 |
| Fnu4HI | GCNGC | 5 cut(s) | 504, 659, 662, 665, 678 |
| FokI | GGATG | 2 cut(s) | 97, 361 |
| FriOI | GRGCYC | 1 cut(s) | 373 |
| Fsp4HI | GCNGC | 5 cut(s) | 504, 659, 662, 665, 678 |
| FspBI | CTAG | 1 cut(s) | 102 |
| GlaI | GCGC | 1 cut(s) | 681 |
| GluI | GCNGC | 5 cut(s) | 504, 659, 662, 665, 678 |
| HaeII | RGCGCY | 1 cut(s) | 683 |
| HaeIII | GGCC | 5 cut(s) | 8, 329, 388, 526, 667 |
| HapII | CCGG | 1 cut(s) | 253 |
| HhaI | GCGC | 1 cut(s) | 682 |
| Hin1II | CATG | 2 cut(s) | 296, 449 |
| Hin6I | GCGC | 1 cut(s) | 680 |
| HinP1I | GCGC | 1 cut(s) | 680 |
| HinfI | GANTC | 3 cut(s) | 85, 247, 628 |
| HpaII | CCGG | 1 cut(s) | 253 |
| HphI | GGTGA | 3 cut(s) | 65, 201, 421 |
| Hpy188I | TCNGA | 1 cut(s) | 633 |
| Hpy188III | TCNNGA | 4 cut(s) | 70, 362, 374, 622 |
| HpyAV | CCTTC | 2 cut(s) | 67, 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 588 |
| HpyCH4V | TGCA | 2 cut(s) | 215, 503 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 277, 664 |
| HpyF3I | CTNAG | 7 cut(s) | 93, 150, 245, 486, 594, 672, 686 |
| Hsp92II | CATG | 2 cut(s) | 296, 449 |
| HspAI | GCGC | 1 cut(s) | 680 |
| Kzo9I | GATC | 1 cut(s) | 376 |
| LmnI | GCTCC | 2 cut(s) | 364, 376 |
| Lsp1109I | GCAGC | 3 cut(s) | 515, 670, 673 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MaeIII | GTNAC | 1 cut(s) | 173 |
| MalI | GATC | 1 cut(s) | 378 |
| MboI | GATC | 1 cut(s) | 376 |
| MboII | GAAGA | 3 cut(s) | 70, 461, 637 |
| MhlI | GDGCHC | 1 cut(s) | 373 |
| MlsI | TGGCCA | 1 cut(s) | 329 |
| MluCI | AATT | 6 cut(s) | 140, 156, 228, 472, 539, 634 |
| MluNI | TGGCCA | 1 cut(s) | 329 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 514 |
| MnlI | CCTC | 5 cut(s) | 124, 129, 399, 515, 667 |
| Mox20I | TGGCCA | 1 cut(s) | 329 |
| MscI | TGGCCA | 1 cut(s) | 329 |
| MseI | TTAA | 2 cut(s) | 155, 227 |
| MslI | CAYNNNNRTG | 1 cut(s) | 291 |
| Msp20I | TGGCCA | 1 cut(s) | 329 |
| MspA1I | CMGCKG | 1 cut(s) | 664 |
| MspI | CCGG | 1 cut(s) | 253 |
| MspR9I | CCNGG | 2 cut(s) | 254, 528 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 277, 664 |
| NciI | CCSGG | 1 cut(s) | 254 |
| NdeI | CATATG | 1 cut(s) | 481 |
| NdeII | GATC | 1 cut(s) | 376 |
| NlaIII | CATG | 2 cut(s) | 296, 449 |
| NlaIV | GGNNCC | 1 cut(s) | 372 |
| PaqCI | CACCTGC | 1 cut(s) | 220 |
| PfeI | GAWTC | 2 cut(s) | 85, 628 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 128 |
| PkrI | GCNGC | 5 cut(s) | 505, 660, 663, 666, 679 |
| PleI | GAGTC | 1 cut(s) | 255 |
| PpsI | GAGTC | 1 cut(s) | 255 |
| PsiI | TTATAA | 1 cut(s) | 404 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 1 cut(s) | 372 |
| PspPI | GGNCC | 1 cut(s) | 524 |
| PstI | CTGCAG | 1 cut(s) | 217 |
| RsaI | GTAC | 3 cut(s) | 24, 98, 261 |
| RsaNI | GTAC | 3 cut(s) | 23, 97, 260 |
| RseI | CAYNNNNRTG | 1 cut(s) | 291 |
| SaqAI | TTAA | 2 cut(s) | 155, 227 |
| SatI | GCNGC | 5 cut(s) | 504, 659, 662, 665, 678 |
| Sau3AI | GATC | 1 cut(s) | 376 |
| Sau96I | GGNCC | 1 cut(s) | 524 |
| SchI | GAGTC | 1 cut(s) | 256 |
| ScrFI | CCNGG | 2 cut(s) | 254, 528 |
| SduI | GDGCHC | 1 cut(s) | 373 |
| SetI | ASST | 4 cut(s) | 49, 94, 214, 402 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 2 cut(s) | 213, 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 291 |
| Sse9I | AATT | 6 cut(s) | 140, 156, 228, 472, 539, 634 |
| SsiI | CCGC | 4 cut(s) | 34, 40, 664, 677 |
| SspMI | CTAG | 1 cut(s) | 102 |
| StyD4I | CCNGG | 2 cut(s) | 252, 526 |
| StyI | CCWWGG | 2 cut(s) | 330, 579 |
| TaaI | ACNGT | 1 cut(s) | 588 |
| TasI | AATT | 6 cut(s) | 140, 156, 228, 472, 539, 634 |
| TatI | WGTACW | 2 cut(s) | 22, 259 |
| TauI | GCSGC | 2 cut(s) | 667, 680 |
| TfiI | GAWTC | 2 cut(s) | 85, 628 |
| Tru1I | TTAA | 2 cut(s) | 155, 227 |
| Tru9I | TTAA | 2 cut(s) | 155, 227 |
| TscAI | CASTG | 1 cut(s) | 249 |
| TseI | GCWGC | 3 cut(s) | 503, 658, 661 |
| TspDTI | ATGAA | 3 cut(s) | 133, 275, 462 |
| TspRI | CASTG | 1 cut(s) | 249 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 128 |
| XapI | RAATTY | 3 cut(s) | 140, 539, 634 |
| XspI | CTAG | 1 cut(s) | 102 |