Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 390 |
| Acc65I | GGTACC | 2 cut(s) | 10, 211 |
| AccB1I | GGYRCC | 2 cut(s) | 10, 211 |
| AccI | GTMKAC | 2 cut(s) | 193, 734 |
| AciI | CCGC | 3 cut(s) | 7, 38, 663 |
| AcsI | RAATTY | 1 cut(s) | 133 |
| AcuI | CTGAAG | 1 cut(s) | 130 |
| AfaI | GTAC | 4 cut(s) | 12, 207, 213, 281 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 20 |
| AflII | CTTAAG | 1 cut(s) | 510 |
| AgsI | TTSAA | 2 cut(s) | 132, 271 |
| AhlI | ACTAGT | 1 cut(s) | 737 |
| AjnI | CCWGG | 3 cut(s) | 243, 372, 636 |
| AluBI | AGCT | 5 cut(s) | 50, 108, 543, 571, 694 |
| AluI | AGCT | 5 cut(s) | 50, 108, 543, 571, 694 |
| Alw21I | GWGCWC | 1 cut(s) | 706 |
| Alw44I | GTGCAC | 1 cut(s) | 702 |
| AoxI | GGCC | 1 cut(s) | 727 |
| ApaLI | GTGCAC | 1 cut(s) | 702 |
| ApeKI | GCWGC | 1 cut(s) | 378 |
| ApoI | RAATTY | 1 cut(s) | 133 |
| AseI | ATTAAT | 1 cut(s) | 580 |
| Asp718I | GGTACC | 2 cut(s) | 10, 211 |
| AspLEI | GCGC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 1 cut(s) | 727 |
| AsuHPI | GGTGA | 1 cut(s) | 572 |
| BaeGI | GKGCMC | 1 cut(s) | 706 |
| BanI | GGYRCC | 2 cut(s) | 10, 211 |
| Bbv12I | GWGCWC | 1 cut(s) | 706 |
| BbvI | GCAGC | 1 cut(s) | 390 |
| BccI | CCATC | 5 cut(s) | 129, 426, 557, 582, 636 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 441, 475 |
| BciT130I | CCWGG | 3 cut(s) | 245, 374, 638 |
| BcuI | ACTAGT | 1 cut(s) | 737 |
| BfaI | CTAG | 3 cut(s) | 27, 738, 749 |
| BfrI | CTTAAG | 1 cut(s) | 510 |
| BisI | GCNGC | 2 cut(s) | 379, 664 |
| BlsI | GCNGC | 2 cut(s) | 380, 665 |
| Bme1390I | CCNGG | 3 cut(s) | 245, 374, 638 |
| BmgT120I | GGNCC | 1 cut(s) | 727 |
| BmiI | GGNNCC | 2 cut(s) | 12, 213 |
| BmrFI | CCNGG | 3 cut(s) | 245, 374, 638 |
| BmrI | ACTGGG | 2 cut(s) | 465, 557 |
| BmsI | GCATC | 2 cut(s) | 481, 540 |
| BmuI | ACTGGG | 2 cut(s) | 465, 557 |
| BpmI | CTGGAG | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 2 cut(s) | 373, 637 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 338, 368 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 20 |
| Bse118I | RCCGGY | 1 cut(s) | 729 |
| Bse1I | ACTGG | 3 cut(s) | 39, 471, 552 |
| BseBI | CCWGG | 3 cut(s) | 245, 374, 638 |
| BseDI | CCNNGG | 2 cut(s) | 373, 637 |
| BseGI | GGATG | 3 cut(s) | 496, 531, 647 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BseMII | CTCAG | 3 cut(s) | 52, 82, 138 |
| BseNI | ACTGG | 3 cut(s) | 39, 471, 552 |
| BseRI | GAGGAG | 1 cut(s) | 108 |
| BseSI | GKGCMC | 1 cut(s) | 706 |
| BseXI | GCAGC | 1 cut(s) | 390 |
| BseYI | CCCAGC | 1 cut(s) | 609 |
| BshFI | GGCC | 1 cut(s) | 729 |
| BshNI | GGYRCC | 2 cut(s) | 10, 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 706 |
| BsiSI | CCGG | 1 cut(s) | 730 |
| BslFI | GGGAC | 1 cut(s) | 37 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 20 |
| BsmFI | GGGAC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 1 cut(s) | 706 |
| BspACI | CCGC | 3 cut(s) | 7, 38, 663 |
| BspANI | GGCC | 1 cut(s) | 729 |
| BspCNI | CTCAG | 3 cut(s) | 53, 83, 139 |
| BspLI | GGNNCC | 2 cut(s) | 12, 213 |
| BspT107I | GGYRCC | 2 cut(s) | 10, 211 |
| BspTI | CTTAAG | 1 cut(s) | 510 |
| BsrFI | RCCGGY | 1 cut(s) | 729 |
| BsrI | ACTGG | 3 cut(s) | 39, 471, 552 |
| BssAI | RCCGGY | 1 cut(s) | 729 |
| BssECI | CCNNGG | 2 cut(s) | 373, 637 |
| Bst2UI | CCWGG | 3 cut(s) | 245, 374, 638 |
| Bst4CI | ACNGT | 4 cut(s) | 200, 385, 447, 657 |
| Bst6I | CTCTTC | 1 cut(s) | 508 |
| BstAFI | CTTAAG | 1 cut(s) | 510 |
| BstC8I | GCNNGC | 2 cut(s) | 5, 692 |
| BstDEI | CTNAG | 3 cut(s) | 61, 91, 147 |
| BstF5I | GGATG | 3 cut(s) | 496, 531, 647 |
| BstHHI | GCGC | 1 cut(s) | 391 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 669, 726 |
| BstNI | CCWGG | 3 cut(s) | 245, 374, 638 |
| BstNSI | RCATGY | 1 cut(s) | 192 |
| BstSCI | CCNGG | 3 cut(s) | 243, 372, 636 |
| BstSLI | GKGCMC | 1 cut(s) | 706 |
| BstV1I | GCAGC | 1 cut(s) | 390 |
| BsuRI | GGCC | 1 cut(s) | 729 |
| BtsCI | GGATG | 3 cut(s) | 496, 531, 647 |
| BtsIMutI | CAGTG | 2 cut(s) | 381, 478 |
| Cac8I | GCNNGC | 2 cut(s) | 5, 692 |
| CfoI | GCGC | 1 cut(s) | 391 |
| Cfr10I | RCCGGY | 1 cut(s) | 729 |
| Cfr13I | GGNCC | 1 cut(s) | 727 |
| Csp6I | GTAC | 4 cut(s) | 11, 206, 212, 280 |
| CviAII | CATG | 3 cut(s) | 189, 678, 707 |
| CviQI | GTAC | 4 cut(s) | 11, 206, 212, 280 |
| DdeI | CTNAG | 3 cut(s) | 61, 91, 147 |
| DraI | TTTAAA | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 1 cut(s) | 508 |
| EarI | CTCTTC | 1 cut(s) | 508 |
| Eco57I | CTGAAG | 1 cut(s) | 130 |
| EcoRII | CCWGG | 3 cut(s) | 243, 372, 636 |
| EcoT22I | ATGCAT | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 192, 681, 710 |
| FaiI | YATR | 8 cut(s) | 126, 190, 314, 366, 496, 540, 679, 708 |
| FaqI | GGGAC | 1 cut(s) | 37 |
| FatI | CATG | 3 cut(s) | 188, 677, 706 |
| FauI | CCCGC | 1 cut(s) | 31 |
| FblI | GTMKAC | 2 cut(s) | 193, 734 |
| Fnu4HI | GCNGC | 2 cut(s) | 379, 664 |
| FokI | GGATG | 3 cut(s) | 503, 518, 654 |
| Fsp4HI | GCNGC | 2 cut(s) | 379, 664 |
| FspBI | CTAG | 3 cut(s) | 27, 738, 749 |
| FspI | TGCGCA | 1 cut(s) | 390 |
| GlaI | GCGC | 1 cut(s) | 390 |
| GluI | GCNGC | 2 cut(s) | 379, 664 |
| GsaI | CCCAGC | 1 cut(s) | 613 |
| GsuI | CTGGAG | 1 cut(s) | 266 |
| HaeIII | GGCC | 1 cut(s) | 729 |
| HapII | CCGG | 1 cut(s) | 730 |
| HhaI | GCGC | 1 cut(s) | 391 |
| Hin1II | CATG | 3 cut(s) | 192, 681, 710 |
| Hin6I | GCGC | 1 cut(s) | 389 |
| HinP1I | GCGC | 1 cut(s) | 389 |
| HinfI | GANTC | 1 cut(s) | 317 |
| HpaII | CCGG | 1 cut(s) | 730 |
| HphI | GGTGA | 1 cut(s) | 572 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 194, 704, 735 |
| Hpy188I | TCNGA | 1 cut(s) | 263 |
| Hpy188III | TCNNGA | 1 cut(s) | 462 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 194, 704, 735 |
| HpyAV | CCTTC | 2 cut(s) | 258, 353 |
| HpyCH4III | ACNGT | 4 cut(s) | 200, 385, 447, 657 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 7 cut(s) | 452, 494, 531, 672, 690, 704, 744 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 669, 726 |
| HpyF3I | CTNAG | 3 cut(s) | 61, 91, 147 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92II | CATG | 3 cut(s) | 192, 681, 710 |
| HspAI | GCGC | 1 cut(s) | 389 |
| KpnI | GGTACC | 2 cut(s) | 14, 215 |
| Lsp1109I | GCAGC | 1 cut(s) | 390 |
| LweI | GCATC | 2 cut(s) | 481, 540 |
| MaeI | CTAG | 3 cut(s) | 27, 738, 749 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MaeIII | GTNAC | 1 cut(s) | 86 |
| MboII | GAAGA | 3 cut(s) | 123, 311, 495 |
| MhlI | GDGCHC | 1 cut(s) | 706 |
| MluCI | AATT | 3 cut(s) | 52, 133, 622 |
| Mph1103I | ATGCAT | 1 cut(s) | 496 |
| MseI | TTAA | 5 cut(s) | 141, 400, 511, 573, 580 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MspCI | CTTAAG | 1 cut(s) | 510 |
| MspI | CCGG | 1 cut(s) | 730 |
| MspR9I | CCNGG | 3 cut(s) | 245, 374, 638 |
| MvaI | CCWGG | 3 cut(s) | 245, 374, 638 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 669, 726 |
| NlaIII | CATG | 3 cut(s) | 192, 681, 710 |
| NlaIV | GGNNCC | 2 cut(s) | 12, 213 |
| NsbI | TGCGCA | 1 cut(s) | 390 |
| NsiI | ATGCAT | 1 cut(s) | 496 |
| NspI | RCATGY | 1 cut(s) | 192 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 317 |
| PfoI | TCCNGGA | 1 cut(s) | 243 |
| PkrI | GCNGC | 2 cut(s) | 380, 665 |
| PshBI | ATTAAT | 1 cut(s) | 580 |
| Psp6I | CCWGG | 3 cut(s) | 243, 372, 636 |
| PspFI | CCCAGC | 1 cut(s) | 609 |
| PspGI | CCWGG | 3 cut(s) | 243, 372, 636 |
| PspN4I | GGNNCC | 2 cut(s) | 12, 213 |
| PspPI | GGNCC | 1 cut(s) | 727 |
| PvuII | CAGCTG | 1 cut(s) | 108 |
| RsaI | GTAC | 4 cut(s) | 12, 207, 213, 281 |
| RsaNI | GTAC | 4 cut(s) | 11, 206, 212, 280 |
| SaqAI | TTAA | 5 cut(s) | 141, 400, 511, 573, 580 |
| SatI | GCNGC | 2 cut(s) | 379, 664 |
| Sau96I | GGNCC | 1 cut(s) | 727 |
| ScrFI | CCNGG | 3 cut(s) | 245, 374, 638 |
| SduI | GDGCHC | 1 cut(s) | 706 |
| SfaNI | GCATC | 2 cut(s) | 481, 540 |
| SmlI | CTYRAG | 1 cut(s) | 510 |
| SmoI | CTYRAG | 1 cut(s) | 510 |
| SpeI | ACTAGT | 1 cut(s) | 737 |
| Sse9I | AATT | 3 cut(s) | 52, 133, 622 |
| SsiI | CCGC | 3 cut(s) | 7, 38, 663 |
| SspMI | CTAG | 3 cut(s) | 27, 738, 749 |
| StyD4I | CCNGG | 3 cut(s) | 243, 372, 636 |
| TaaI | ACNGT | 4 cut(s) | 200, 385, 447, 657 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TaqI | TCGA | 1 cut(s) | 224 |
| TasI | AATT | 3 cut(s) | 52, 133, 622 |
| TatI | WGTACW | 1 cut(s) | 279 |
| TauI | GCSGC | 1 cut(s) | 666 |
| TfiI | GAWTC | 1 cut(s) | 317 |
| Tru1I | TTAA | 5 cut(s) | 141, 400, 511, 573, 580 |
| Tru9I | TTAA | 5 cut(s) | 141, 400, 511, 573, 580 |
| TscAI | CASTG | 2 cut(s) | 388, 478 |
| TseI | GCWGC | 1 cut(s) | 378 |
| TspDTI | ATGAA | 2 cut(s) | 492, 495 |
| TspGWI | ACGGA | 1 cut(s) | 246 |
| TspRI | CASTG | 2 cut(s) | 388, 478 |
| Vha464I | CTTAAG | 1 cut(s) | 510 |
| VneI | GTGCAC | 1 cut(s) | 702 |
| VspI | ATTAAT | 1 cut(s) | 580 |
| XapI | RAATTY | 1 cut(s) | 133 |
| XceI | RCATGY | 1 cut(s) | 192 |
| XmiI | GTMKAC | 2 cut(s) | 193, 734 |
| XspI | CTAG | 3 cut(s) | 27, 738, 749 |
| Zsp2I | ATGCAT | 1 cut(s) | 496 |