ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 736 |
| AccB1I | GGYRCC | 2 cut(s) | 250, 736 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 643 |
| AciI | CCGC | 4 cut(s) | 206, 248, 305, 513 |
| AclWI | GGATC | 1 cut(s) | 628 |
| AcsI | RAATTY | 1 cut(s) | 599 |
| AfaI | GTAC | 1 cut(s) | 738 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 592, 643 |
| AflII | CTTAAG | 1 cut(s) | 107 |
| AgeI | ACCGGT | 1 cut(s) | 585 |
| AgsI | TTSAA | 4 cut(s) | 199, 258, 425, 695 |
| AleI | CACNNNNGTG | 1 cut(s) | 536 |
| AluBI | AGCT | 4 cut(s) | 46, 242, 331, 702 |
| AluI | AGCT | 4 cut(s) | 46, 242, 331, 702 |
| Alw26I | GTCTC | 1 cut(s) | 606 |
| AlwI | GGATC | 1 cut(s) | 628 |
| AoxI | GGCC | 1 cut(s) | 147 |
| ApoI | RAATTY | 1 cut(s) | 599 |
| AsiGI | ACCGGT | 1 cut(s) | 585 |
| Asp718I | GGTACC | 1 cut(s) | 736 |
| AspA2I | CCTAGG | 1 cut(s) | 443 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 131, 361 |
| AsuNHI | GCTAGC | 1 cut(s) | 331 |
| AvrII | CCTAGG | 1 cut(s) | 443 |
| AxyI | CCTNAGG | 1 cut(s) | 15 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BanI | GGYRCC | 2 cut(s) | 250, 736 |
| BclI | TGATCA | 1 cut(s) | 504 |
| BcoDI | GTCTC | 1 cut(s) | 606 |
| BfaI | CTAG | 5 cut(s) | 189, 243, 332, 354, 444 |
| BfmI | CTRYAG | 1 cut(s) | 237 |
| BfrI | CTTAAG | 1 cut(s) | 107 |
| BisI | GCNGC | 1 cut(s) | 249 |
| BlnI | CCTAGG | 1 cut(s) | 443 |
| BlsI | GCNGC | 1 cut(s) | 250 |
| BmiI | GGNNCC | 2 cut(s) | 252, 738 |
| BmsI | GCATC | 5 cut(s) | 240, 344, 516, 570, 574 |
| BmtI | GCTAGC | 1 cut(s) | 335 |
| Bsa29I | ATCGAT | 1 cut(s) | 524 |
| BsaBI | GATNNNNATC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 1 cut(s) | 443 |
| BsaWI | WCCGGW | 1 cut(s) | 585 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 592, 643 |
| Bse118I | RCCGGY | 1 cut(s) | 585 |
| Bse1I | ACTGG | 2 cut(s) | 83, 150 |
| Bse21I | CCTNAGG | 1 cut(s) | 15 |
| Bse8I | GATNNNNATC | 1 cut(s) | 375 |
| BseCI | ATCGAT | 1 cut(s) | 524 |
| BseDI | CCNNGG | 1 cut(s) | 443 |
| BseGI | GGATG | 1 cut(s) | 198 |
| BseJI | GATNNNNATC | 1 cut(s) | 375 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 592, 643 |
| BseMII | CTCAG | 2 cut(s) | 405, 630 |
| BseNI | ACTGG | 2 cut(s) | 83, 150 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BshFI | GGCC | 1 cut(s) | 149 |
| BshNI | GGYRCC | 2 cut(s) | 250, 736 |
| BshTI | ACCGGT | 1 cut(s) | 585 |
| BshVI | ATCGAT | 1 cut(s) | 524 |
| BsiSI | CCGG | 1 cut(s) | 586 |
| BslFI | GGGAC | 1 cut(s) | 639 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 592, 643 |
| BsmAI | GTCTC | 1 cut(s) | 606 |
| BsmFI | GGGAC | 1 cut(s) | 639 |
| BsnI | GGCC | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp143I | GATC | 4 cut(s) | 89, 118, 504, 633 |
| BspACI | CCGC | 4 cut(s) | 206, 248, 305, 513 |
| BspANI | GGCC | 1 cut(s) | 149 |
| BspCNI | CTCAG | 2 cut(s) | 406, 629 |
| BspDI | ATCGAT | 1 cut(s) | 524 |
| BspHI | TCATGA | 2 cut(s) | 297, 574 |
| BspLI | GGNNCC | 2 cut(s) | 252, 738 |
| BspOI | GCTAGC | 1 cut(s) | 335 |
| BspPI | GGATC | 1 cut(s) | 628 |
| BspQI | GCTCTTC | 2 cut(s) | 321, 709 |
| BspT107I | GGYRCC | 2 cut(s) | 250, 736 |
| BspTI | CTTAAG | 1 cut(s) | 107 |
| BsrFI | RCCGGY | 1 cut(s) | 585 |
| BsrI | ACTGG | 2 cut(s) | 83, 150 |
| BssAI | RCCGGY | 1 cut(s) | 585 |
| BssECI | CCNNGG | 1 cut(s) | 443 |
| BssMI | GATC | 4 cut(s) | 89, 118, 504, 633 |
| BssT1I | CCWWGG | 1 cut(s) | 443 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 4 cut(s) | 15, 194, 321, 709 |
| BstAFI | CTTAAG | 1 cut(s) | 107 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 223, 526 |
| BstC8I | GCNNGC | 2 cut(s) | 10, 333 |
| BstDEI | CTNAG | 3 cut(s) | 15, 414, 616 |
| BstEII | GGTNACC | 1 cut(s) | 397 |
| BstF5I | GGATG | 1 cut(s) | 198 |
| BstKTI | GATC | 4 cut(s) | 92, 121, 507, 636 |
| BstMAI | GTCTC | 1 cut(s) | 606 |
| BstMBI | GATC | 4 cut(s) | 89, 118, 504, 633 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 223, 248, 328, 526, 708 |
| BstPI | GGTNACC | 1 cut(s) | 397 |
| BstSFI | CTRYAG | 1 cut(s) | 237 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstX2I | RGATCY | 1 cut(s) | 633 |
| BstYI | RGATCY | 1 cut(s) | 633 |
| Bsu15I | ATCGAT | 1 cut(s) | 524 |
| Bsu36I | CCTNAGG | 1 cut(s) | 15 |
| BsuRI | GGCC | 1 cut(s) | 149 |
| BsuTUI | ATCGAT | 1 cut(s) | 524 |
| BtsCI | GGATG | 1 cut(s) | 198 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 2 cut(s) | 10, 333 |
| CciI | TCATGA | 2 cut(s) | 297, 574 |
| Cfr10I | RCCGGY | 1 cut(s) | 585 |
| ClaI | ATCGAT | 1 cut(s) | 524 |
| Csp6I | GTAC | 1 cut(s) | 737 |
| CspAI | ACCGGT | 1 cut(s) | 585 |
| CviAII | CATG | 8 cut(s) | 65, 93, 218, 227, 298, 484, 575, 648 |
| CviQI | GTAC | 1 cut(s) | 737 |
| DdeI | CTNAG | 3 cut(s) | 15, 414, 616 |
| DpnI | GATC | 4 cut(s) | 91, 120, 506, 635 |
| DpnII | GATC | 4 cut(s) | 89, 118, 504, 633 |
| Eam1104I | CTCTTC | 4 cut(s) | 15, 194, 321, 709 |
| EarI | CTCTTC | 4 cut(s) | 15, 194, 321, 709 |
| Eco130I | CCWWGG | 1 cut(s) | 443 |
| Eco81I | CCTNAGG | 1 cut(s) | 15 |
| Eco91I | GGTNACC | 1 cut(s) | 397 |
| EcoO65I | GGTNACC | 1 cut(s) | 397 |
| EcoT14I | CCWWGG | 1 cut(s) | 443 |
| ErhI | CCWWGG | 1 cut(s) | 443 |
| FaeI | CATG | 8 cut(s) | 68, 96, 221, 230, 301, 487, 578, 651 |
| FaqI | GGGAC | 1 cut(s) | 639 |
| FatI | CATG | 8 cut(s) | 64, 92, 217, 226, 297, 483, 574, 647 |
| FauI | CCCGC | 1 cut(s) | 298 |
| FauNDI | CATATG | 1 cut(s) | 535 |
| FbaI | TGATCA | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 1 cut(s) | 249 |
| FokI | GGATG | 1 cut(s) | 205 |
| Fsp4HI | GCNGC | 1 cut(s) | 249 |
| FspBI | CTAG | 5 cut(s) | 189, 243, 332, 354, 444 |
| GluI | GCNGC | 1 cut(s) | 249 |
| HaeIII | GGCC | 1 cut(s) | 149 |
| HapII | CCGG | 1 cut(s) | 586 |
| Hin1II | CATG | 8 cut(s) | 68, 96, 221, 230, 301, 487, 578, 651 |
| HinfI | GANTC | 2 cut(s) | 284, 614 |
| HpaII | CCGG | 1 cut(s) | 586 |
| HphI | GGTGA | 3 cut(s) | 128, 131, 361 |
| Hpy166II | GTNNAC | 2 cut(s) | 361, 386 |
| Hpy188I | TCNGA | 1 cut(s) | 619 |
| Hpy188III | TCNNGA | 2 cut(s) | 298, 575 |
| Hpy8I | GTNNAC | 2 cut(s) | 361, 386 |
| Hpy99I | CGWCG | 1 cut(s) | 168 |
| HpyAV | CCTTC | 6 cut(s) | 139, 264, 295, 460, 616, 671 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 5 cut(s) | 64, 226, 322, 520, 583 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 223, 248, 328, 526, 708 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 414, 616 |
| Hsp92II | CATG | 8 cut(s) | 68, 96, 221, 230, 301, 487, 578, 651 |
| KpnI | GGTACC | 1 cut(s) | 740 |
| Ksp22I | TGATCA | 1 cut(s) | 504 |
| Kzo9I | GATC | 4 cut(s) | 89, 118, 504, 633 |
| LguI | GCTCTTC | 2 cut(s) | 321, 709 |
| LpnPI | CCDG | 5 cut(s) | 64, 155, 163, 474, 599 |
| LweI | GCATC | 5 cut(s) | 240, 344, 516, 570, 574 |
| MaeI | CTAG | 5 cut(s) | 189, 243, 332, 354, 444 |
| MaeIII | GTNAC | 4 cut(s) | 152, 349, 397, 555 |
| MalI | GATC | 4 cut(s) | 91, 120, 506, 635 |
| MboI | GATC | 4 cut(s) | 89, 118, 504, 633 |
| MboII | GAAGA | 8 cut(s) | 32, 211, 286, 338, 460, 463, 643, 696 |
| MflI | RGATCY | 1 cut(s) | 633 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 5 cut(s) | 27, 317, 425, 544, 599 |
| MlyI | GAGTC | 1 cut(s) | 608 |
| MmeI | TCCRAC | 2 cut(s) | 15, 443 |
| MnlI | CCTC | 5 cut(s) | 195, 307, 409, 490, 667 |
| MseI | TTAA | 4 cut(s) | 108, 123, 177, 732 |
| MslI | CAYNNNNRTG | 2 cut(s) | 296, 536 |
| MspA1I | CMGCKG | 1 cut(s) | 515 |
| MspCI | CTTAAG | 1 cut(s) | 107 |
| MspI | CCGG | 1 cut(s) | 586 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 223, 248, 328, 526, 708 |
| NdeI | CATATG | 1 cut(s) | 535 |
| NdeII | GATC | 4 cut(s) | 89, 118, 504, 633 |
| NheI | GCTAGC | 1 cut(s) | 331 |
| NlaIII | CATG | 8 cut(s) | 68, 96, 221, 230, 301, 487, 578, 651 |
| NlaIV | GGNNCC | 2 cut(s) | 252, 738 |
| NmuCI | GTSAC | 1 cut(s) | 349 |
| OliI | CACNNNNGTG | 1 cut(s) | 536 |
| PagI | TCATGA | 2 cut(s) | 297, 574 |
| PciSI | GCTCTTC | 2 cut(s) | 321, 709 |
| PfeI | GAWTC | 1 cut(s) | 284 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 643 |
| PinAI | ACCGGT | 1 cut(s) | 585 |
| PkrI | GCNGC | 1 cut(s) | 250 |
| PleI | GAGTC | 1 cut(s) | 608 |
| PpsI | GAGTC | 1 cut(s) | 608 |
| PspEI | GGTNACC | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 2 cut(s) | 252, 738 |
| PsuI | RGATCY | 1 cut(s) | 633 |
| RsaI | GTAC | 1 cut(s) | 738 |
| RsaNI | GTAC | 1 cut(s) | 737 |
| RseI | CAYNNNNRTG | 2 cut(s) | 296, 536 |
| SapI | GCTCTTC | 2 cut(s) | 321, 709 |
| SaqAI | TTAA | 4 cut(s) | 108, 123, 177, 732 |
| SatI | GCNGC | 1 cut(s) | 249 |
| Sau3AI | GATC | 4 cut(s) | 89, 118, 504, 633 |
| SchI | GAGTC | 1 cut(s) | 608 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 5 cut(s) | 240, 344, 516, 570, 574 |
| SfcI | CTRYAG | 1 cut(s) | 237 |
| SgrAI | CRCCGGYG | 1 cut(s) | 585 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 296, 536 |
| SmlI | CTYRAG | 1 cut(s) | 107 |
| SmoI | CTYRAG | 1 cut(s) | 107 |
| Sse9I | AATT | 5 cut(s) | 27, 317, 425, 544, 599 |
| SsiI | CCGC | 4 cut(s) | 206, 248, 305, 513 |
| SspMI | CTAG | 5 cut(s) | 189, 243, 332, 354, 444 |
| StyI | CCWWGG | 1 cut(s) | 443 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaqI | TCGA | 1 cut(s) | 524 |
| TasI | AATT | 5 cut(s) | 27, 317, 425, 544, 599 |
| TauI | GCSGC | 1 cut(s) | 251 |
| TfiI | GAWTC | 1 cut(s) | 284 |
| Tru1I | TTAA | 4 cut(s) | 108, 123, 177, 732 |
| Tru9I | TTAA | 4 cut(s) | 108, 123, 177, 732 |
| TscAI | CASTG | 1 cut(s) | 345 |
| TseFI | GTSAC | 1 cut(s) | 349 |
| Tsp45I | GTSAC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 6 cut(s) | 280, 286, 314, 418, 470, 557 |
| TspGWI | ACGGA | 2 cut(s) | 181, 643 |
| TspRI | CASTG | 1 cut(s) | 345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 643 |
| Vha464I | CTTAAG | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 599 |
| XmaJI | CCTAGG | 1 cut(s) | 443 |
| XspI | CTAG | 5 cut(s) | 189, 243, 332, 354, 444 |