Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 19 - 134 | 3.2e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 242 |
| AcoI | YGGCCR | 1 cut(s) | 500 |
| AcuI | CTGAAG | 1 cut(s) | 239 |
| AfaI | GTAC | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 29, 186 |
| AgsI | TTSAA | 1 cut(s) | 481 |
| AjnI | CCWGG | 3 cut(s) | 28, 334, 415 |
| AleI | CACNNNNGTG | 1 cut(s) | 31 |
| AluBI | AGCT | 5 cut(s) | 59, 197, 259, 377, 392 |
| AluI | AGCT | 5 cut(s) | 59, 197, 259, 377, 392 |
| Alw26I | GTCTC | 3 cut(s) | 227, 277, 282 |
| AoxI | GGCC | 1 cut(s) | 500 |
| ApeKI | GCWGC | 1 cut(s) | 377 |
| AspLEI | GCGC | 2 cut(s) | 6, 169 |
| AsuHPI | GGTGA | 1 cut(s) | 431 |
| BalI | TGGCCA | 1 cut(s) | 502 |
| BauI | CACGAG | 1 cut(s) | 381 |
| BbvI | GCAGC | 1 cut(s) | 364 |
| BccI | CCATC | 1 cut(s) | 511 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 3 cut(s) | 30, 336, 417 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BcoDI | GTCTC | 3 cut(s) | 227, 277, 282 |
| BfmI | CTRYAG | 1 cut(s) | 468 |
| BisI | GCNGC | 1 cut(s) | 378 |
| BlsI | GCNGC | 1 cut(s) | 379 |
| Bme1390I | CCNGG | 3 cut(s) | 30, 336, 417 |
| BmrFI | CCNGG | 3 cut(s) | 30, 336, 417 |
| BpmI | CTGGAG | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 473 |
| Bsa29I | ATCGAT | 1 cut(s) | 475 |
| BsaAI | YACGTR | 1 cut(s) | 537 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 29, 186 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| BseBI | CCWGG | 3 cut(s) | 30, 336, 417 |
| BseCI | ATCGAT | 1 cut(s) | 475 |
| BseDI | CCNNGG | 1 cut(s) | 29 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 29, 186 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseXI | GCAGC | 1 cut(s) | 364 |
| BseYI | CCCAGC | 1 cut(s) | 185 |
| BsgI | GTGCAG | 1 cut(s) | 284 |
| Bsh1236I | CGCG | 1 cut(s) | 242 |
| BshFI | GGCC | 1 cut(s) | 502 |
| BshVI | ATCGAT | 1 cut(s) | 475 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 29, 186 |
| BsmAI | GTCTC | 3 cut(s) | 227, 277, 282 |
| BsmBI | CGTCTC | 1 cut(s) | 282 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsnI | GGCC | 1 cut(s) | 502 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| Bsp143I | GATC | 2 cut(s) | 214, 472 |
| Bsp68I | TCGCGA | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 502 |
| BspDI | ATCGAT | 1 cut(s) | 475 |
| BspFNI | CGCG | 1 cut(s) | 242 |
| BspMAI | CTGCAG | 1 cut(s) | 472 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BssECI | CCNNGG | 1 cut(s) | 29 |
| BssMI | GATC | 2 cut(s) | 214, 472 |
| BssSI | CACGAG | 1 cut(s) | 381 |
| Bst2BI | CACGAG | 1 cut(s) | 381 |
| Bst2UI | CCWGG | 3 cut(s) | 30, 336, 417 |
| Bst4CI | ACNGT | 1 cut(s) | 362 |
| Bst6I | CTCTTC | 1 cut(s) | 562 |
| BstBAI | YACGTR | 1 cut(s) | 537 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstFNI | CGCG | 1 cut(s) | 242 |
| BstHHI | GCGC | 2 cut(s) | 6, 169 |
| BstKTI | GATC | 2 cut(s) | 217, 475 |
| BstMAI | GTCTC | 3 cut(s) | 227, 277, 282 |
| BstMBI | GATC | 2 cut(s) | 214, 472 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 398 |
| BstNI | CCWGG | 3 cut(s) | 30, 336, 417 |
| BstSCI | CCNGG | 3 cut(s) | 28, 334, 415 |
| BstSFI | CTRYAG | 1 cut(s) | 468 |
| BstSNI | TACGTA | 1 cut(s) | 537 |
| BstUI | CGCG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 1 cut(s) | 364 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 33 |
| Bsu15I | ATCGAT | 1 cut(s) | 475 |
| BsuRI | GGCC | 1 cut(s) | 502 |
| BsuTUI | ATCGAT | 1 cut(s) | 475 |
| BtuMI | TCGCGA | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| CfoI | GCGC | 2 cut(s) | 6, 169 |
| ClaI | ATCGAT | 1 cut(s) | 475 |
| CsiI | ACCWGGT | 2 cut(s) | 334, 415 |
| Csp6I | GTAC | 1 cut(s) | 538 |
| CviAII | CATG | 5 cut(s) | 53, 113, 152, 218, 492 |
| CviQI | GTAC | 1 cut(s) | 538 |
| DpnI | GATC | 2 cut(s) | 216, 474 |
| DpnII | GATC | 2 cut(s) | 214, 472 |
| EaeI | YGGCCR | 1 cut(s) | 500 |
| Eam1104I | CTCTTC | 1 cut(s) | 562 |
| EarI | CTCTTC | 1 cut(s) | 562 |
| Eco105I | TACGTA | 1 cut(s) | 537 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco57I | CTGAAG | 1 cut(s) | 239 |
| EcoRII | CCWGG | 3 cut(s) | 28, 334, 415 |
| Esp3I | CGTCTC | 1 cut(s) | 282 |
| FaeI | CATG | 5 cut(s) | 56, 116, 155, 221, 495 |
| FaiI | YATR | 8 cut(s) | 54, 114, 153, 194, 219, 303, 326, 493 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 5 cut(s) | 52, 112, 151, 217, 491 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 1 cut(s) | 378 |
| Fsp4HI | GCNGC | 1 cut(s) | 378 |
| GlaI | GCGC | 2 cut(s) | 5, 168 |
| GluI | GCNGC | 1 cut(s) | 378 |
| GsaI | CCCAGC | 1 cut(s) | 189 |
| GsuI | CTGGAG | 1 cut(s) | 147 |
| HaeIII | GGCC | 1 cut(s) | 502 |
| HhaI | GCGC | 2 cut(s) | 6, 169 |
| Hin1II | CATG | 5 cut(s) | 56, 116, 155, 221, 495 |
| Hin6I | GCGC | 2 cut(s) | 4, 167 |
| HinP1I | GCGC | 2 cut(s) | 4, 167 |
| HinfI | GANTC | 3 cut(s) | 248, 477, 578 |
| HphI | GGTGA | 1 cut(s) | 431 |
| Hpy188I | TCNGA | 1 cut(s) | 577 |
| Hpy188III | TCNNGA | 3 cut(s) | 241, 383, 452 |
| HpyAV | CCTTC | 2 cut(s) | 355, 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 362 |
| HpyCH4IV | ACGT | 1 cut(s) | 536 |
| HpyCH4V | TGCA | 4 cut(s) | 265, 286, 328, 470 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 398 |
| HpySE526I | ACGT | 1 cut(s) | 536 |
| Hsp92II | CATG | 5 cut(s) | 56, 116, 155, 221, 495 |
| HspAI | GCGC | 2 cut(s) | 4, 167 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| Kzo9I | GATC | 2 cut(s) | 214, 472 |
| LmnI | GCTCC | 1 cut(s) | 56 |
| Lsp1109I | GCAGC | 1 cut(s) | 364 |
| MabI | ACCWGGT | 2 cut(s) | 334, 415 |
| MaeII | ACGT | 1 cut(s) | 536 |
| MalI | GATC | 2 cut(s) | 216, 474 |
| MboI | GATC | 2 cut(s) | 214, 472 |
| MboII | GAAGA | 5 cut(s) | 28, 317, 426, 498, 549 |
| MlsI | TGGCCA | 1 cut(s) | 502 |
| MluCI | AATT | 3 cut(s) | 118, 329, 482 |
| MluNI | TGGCCA | 1 cut(s) | 502 |
| MnlI | CCTC | 3 cut(s) | 33, 448, 565 |
| Mox20I | TGGCCA | 1 cut(s) | 502 |
| MscI | TGGCCA | 1 cut(s) | 502 |
| MseI | TTAA | 2 cut(s) | 38, 63 |
| MslI | CAYNNNNRTG | 1 cut(s) | 31 |
| Msp20I | TGGCCA | 1 cut(s) | 502 |
| MspA1I | CMGCKG | 1 cut(s) | 259 |
| MspR9I | CCNGG | 3 cut(s) | 30, 336, 417 |
| MvaI | CCWGG | 3 cut(s) | 30, 336, 417 |
| MvnI | CGCG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 398 |
| NdeII | GATC | 2 cut(s) | 214, 472 |
| NlaIII | CATG | 5 cut(s) | 56, 116, 155, 221, 495 |
| NruI | TCGCGA | 1 cut(s) | 242 |
| OliI | CACNNNNGTG | 1 cut(s) | 31 |
| PfeI | GAWTC | 3 cut(s) | 248, 477, 578 |
| PkrI | GCNGC | 1 cut(s) | 379 |
| Ppu21I | YACGTR | 1 cut(s) | 537 |
| Psp6I | CCWGG | 3 cut(s) | 28, 334, 415 |
| PspFI | CCCAGC | 1 cut(s) | 185 |
| PspGI | CCWGG | 3 cut(s) | 28, 334, 415 |
| PstI | CTGCAG | 1 cut(s) | 472 |
| PvuII | CAGCTG | 1 cut(s) | 259 |
| RruI | TCGCGA | 1 cut(s) | 242 |
| RsaI | GTAC | 1 cut(s) | 539 |
| RsaNI | GTAC | 1 cut(s) | 538 |
| RseI | CAYNNNNRTG | 1 cut(s) | 31 |
| SaqAI | TTAA | 2 cut(s) | 38, 63 |
| SatI | GCNGC | 1 cut(s) | 378 |
| Sau3AI | GATC | 2 cut(s) | 214, 472 |
| ScrFI | CCNGG | 3 cut(s) | 30, 336, 417 |
| SexAI | ACCWGGT | 2 cut(s) | 334, 415 |
| SfcI | CTRYAG | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 31 |
| SmlI | CTYRAG | 1 cut(s) | 452 |
| SmoI | CTYRAG | 1 cut(s) | 452 |
| SnaBI | TACGTA | 1 cut(s) | 537 |
| Sse9I | AATT | 3 cut(s) | 118, 329, 482 |
| StyD4I | CCNGG | 3 cut(s) | 28, 334, 415 |
| TaaI | ACNGT | 1 cut(s) | 362 |
| TaiI | ACGT | 1 cut(s) | 539 |
| TaqI | TCGA | 2 cut(s) | 174, 475 |
| TasI | AATT | 3 cut(s) | 118, 329, 482 |
| TfiI | GAWTC | 3 cut(s) | 248, 477, 578 |
| Tru1I | TTAA | 2 cut(s) | 38, 63 |
| Tru9I | TTAA | 2 cut(s) | 38, 63 |
| TseI | GCWGC | 1 cut(s) | 377 |
| TspDTI | ATGAA | 5 cut(s) | 113, 147, 318, 387, 561 |