Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 43 - 143 | 7.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 280 |
| AciI | CCGC | 2 cut(s) | 260, 347 |
| AcuI | CTGAAG | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 155, 253, 304 |
| AgsI | TTSAA | 2 cut(s) | 323, 428 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AoxI | GGCC | 1 cut(s) | 138 |
| ApeKI | GCWGC | 1 cut(s) | 209 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 39 |
| AspLEI | GCGC | 1 cut(s) | 352 |
| AspS9I | GGNCC | 2 cut(s) | 138, 244 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BbvI | GCAGC | 1 cut(s) | 196 |
| BccI | CCATC | 2 cut(s) | 128, 188 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 32, 108 |
| BfoI | RGCGCY | 1 cut(s) | 353 |
| BisI | GCNGC | 2 cut(s) | 210, 348 |
| BlsI | GCNGC | 2 cut(s) | 211, 349 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 2 cut(s) | 138, 244 |
| BmiI | GGNNCC | 1 cut(s) | 139 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 1 cut(s) | 298 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 155, 253, 304 |
| Bse1I | ACTGG | 2 cut(s) | 20, 62 |
| BseDI | CCNNGG | 1 cut(s) | 298 |
| BseGI | GGATG | 2 cut(s) | 52, 157 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 155, 253, 304 |
| BseMII | CTCAG | 1 cut(s) | 369 |
| BseNI | ACTGG | 2 cut(s) | 20, 62 |
| BseXI | GCAGC | 1 cut(s) | 196 |
| BshFI | GGCC | 1 cut(s) | 140 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 155, 253, 304 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsnI | GGCC | 1 cut(s) | 140 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| BspACI | CCGC | 2 cut(s) | 260, 347 |
| BspANI | GGCC | 1 cut(s) | 140 |
| BspCNI | CTCAG | 1 cut(s) | 370 |
| BspLI | GGNNCC | 1 cut(s) | 139 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrI | ACTGG | 2 cut(s) | 20, 62 |
| BssECI | CCNNGG | 1 cut(s) | 298 |
| BssT1I | CCWWGG | 1 cut(s) | 298 |
| Bst4CI | ACNGT | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 1 cut(s) | 71 |
| BstDEI | CTNAG | 2 cut(s) | 90, 378 |
| BstF5I | GGATG | 2 cut(s) | 52, 157 |
| BstH2I | RGCGCY | 1 cut(s) | 353 |
| BstHHI | GCGC | 1 cut(s) | 352 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 215, 272 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstV1I | GCAGC | 1 cut(s) | 196 |
| BsuRI | GGCC | 1 cut(s) | 140 |
| BtsCI | GGATG | 2 cut(s) | 52, 157 |
| BtsIMutI | CAGTG | 1 cut(s) | 13 |
| CfoI | GCGC | 1 cut(s) | 352 |
| Cfr13I | GGNCC | 2 cut(s) | 138, 244 |
| CseI | GACGC | 1 cut(s) | 104 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 284, 319 |
| CviAII | CATG | 1 cut(s) | 233 |
| CviJI | RGCY | 5 cut(s) | 61, 140, 218, 275, 308 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 140, 218, 275, 308 |
| DdeI | CTNAG | 2 cut(s) | 90, 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 71 |
| Eco130I | CCWWGG | 1 cut(s) | 298 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| Eco57I | CTGAAG | 1 cut(s) | 127 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoT14I | CCWWGG | 1 cut(s) | 298 |
| ErhI | CCWWGG | 1 cut(s) | 298 |
| FaeI | CATG | 1 cut(s) | 236 |
| FaiI | YATR | 5 cut(s) | 8, 200, 221, 234, 254 |
| FatI | CATG | 1 cut(s) | 232 |
| FblI | GTMKAC | 1 cut(s) | 280 |
| Fnu4HI | GCNGC | 2 cut(s) | 210, 348 |
| FokI | GGATG | 2 cut(s) | 39, 164 |
| Fsp4HI | GCNGC | 2 cut(s) | 210, 348 |
| FspBI | CTAG | 2 cut(s) | 32, 108 |
| GlaI | GCGC | 1 cut(s) | 351 |
| GluI | GCNGC | 2 cut(s) | 210, 348 |
| HaeII | RGCGCY | 1 cut(s) | 353 |
| HaeIII | GGCC | 1 cut(s) | 140 |
| HapII | CCGG | 1 cut(s) | 149 |
| HgaI | GACGC | 1 cut(s) | 104 |
| HhaI | GCGC | 1 cut(s) | 352 |
| Hin1II | CATG | 1 cut(s) | 236 |
| Hin6I | GCGC | 1 cut(s) | 350 |
| HinP1I | GCGC | 1 cut(s) | 350 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| HinfI | GANTC | 4 cut(s) | 10, 291, 329, 370 |
| HpaII | CCGG | 1 cut(s) | 149 |
| Hpy166II | GTNNAC | 2 cut(s) | 87, 281 |
| Hpy188I | TCNGA | 6 cut(s) | 45, 146, 185, 342, 379, 417 |
| Hpy8I | GTNNAC | 2 cut(s) | 87, 281 |
| HpyAV | CCTTC | 1 cut(s) | 151 |
| HpyCH4III | ACNGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 236 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 215, 272 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 378 |
| Hsp92II | CATG | 1 cut(s) | 236 |
| HspAI | GCGC | 1 cut(s) | 350 |
| LpnPI | CCDG | 3 cut(s) | 75, 162, 261 |
| Lsp1109I | GCAGC | 1 cut(s) | 196 |
| MaeI | CTAG | 2 cut(s) | 32, 108 |
| MboII | GAAGA | 2 cut(s) | 47, 88 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MnlI | CCTC | 3 cut(s) | 114, 256, 373 |
| MroXI | GAANNNNTTC | 1 cut(s) | 39 |
| MseI | TTAA | 2 cut(s) | 120, 249 |
| MspI | CCGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 215, 272 |
| NlaIII | CATG | 1 cut(s) | 236 |
| NlaIV | GGNNCC | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PdmI | GAANNNNTTC | 1 cut(s) | 39 |
| PfeI | GAWTC | 3 cut(s) | 10, 291, 370 |
| PkrI | GCNGC | 2 cut(s) | 211, 349 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| PspN4I | GGNNCC | 1 cut(s) | 139 |
| PspPI | GGNCC | 2 cut(s) | 138, 244 |
| SaqAI | TTAA | 2 cut(s) | 120, 249 |
| SatI | GCNGC | 2 cut(s) | 210, 348 |
| Sau96I | GGNCC | 2 cut(s) | 138, 244 |
| SchI | GAGTC | 1 cut(s) | 323 |
| SetI | ASST | 3 cut(s) | 226, 304, 384 |
| SinI | GGWCC | 1 cut(s) | 244 |
| SsiI | CCGC | 2 cut(s) | 260, 347 |
| SspMI | CTAG | 2 cut(s) | 32, 108 |
| StyI | CCWWGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 1 cut(s) | 84 |
| TaqI | TCGA | 1 cut(s) | 388 |
| TaqII | GACCGA | 1 cut(s) | 232 |
| TauI | GCSGC | 1 cut(s) | 350 |
| TfiI | GAWTC | 3 cut(s) | 10, 291, 370 |
| Tru1I | TTAA | 2 cut(s) | 120, 249 |
| Tru9I | TTAA | 2 cut(s) | 120, 249 |
| TscAI | CASTG | 1 cut(s) | 20 |
| TseI | GCWGC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 2 cut(s) | 17, 383 |
| TspRI | CASTG | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XmiI | GTMKAC | 1 cut(s) | 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 39 |
| XspI | CTAG | 2 cut(s) | 32, 108 |