ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 172 - 236 | 8.3e-09 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 671 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 167 |
| AccI | GTMKAC | 1 cut(s) | 364 |
| AciI | CCGC | 1 cut(s) | 893 |
| AclI | AACGTT | 1 cut(s) | 875 |
| AclWI | GGATC | 1 cut(s) | 391 |
| AcsI | RAATTY | 3 cut(s) | 262, 469, 724 |
| AcuI | CTGAAG | 1 cut(s) | 678 |
| AcyI | GRCGYC | 1 cut(s) | 905 |
| AfaI | GTAC | 2 cut(s) | 256, 735 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 167, 251, 592 |
| AgsI | TTSAA | 8 cut(s) | 229, 323, 489, 504, 679, 698, 724, 730 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 512, 544 |
| AluBI | AGCT | 3 cut(s) | 225, 347, 932 |
| AluI | AGCT | 3 cut(s) | 225, 347, 932 |
| Alw21I | GWGCWC | 1 cut(s) | 640 |
| Alw26I | GTCTC | 1 cut(s) | 151 |
| Alw44I | GTGCAC | 1 cut(s) | 636 |
| AlwI | GGATC | 1 cut(s) | 391 |
| Ama87I | CYCGRG | 1 cut(s) | 591 |
| ApaLI | GTGCAC | 1 cut(s) | 636 |
| ApeKI | GCWGC | 2 cut(s) | 208, 512 |
| ApoI | RAATTY | 3 cut(s) | 262, 469, 724 |
| AseI | ATTAAT | 1 cut(s) | 90 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 264 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuC2I | CCSGG | 2 cut(s) | 592, 593 |
| AsuHPI | GGTGA | 2 cut(s) | 107, 311 |
| AsuNHI | GCTAGC | 1 cut(s) | 347 |
| AvaI | CYCGRG | 1 cut(s) | 591 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| BaeGI | GKGCMC | 1 cut(s) | 640 |
| BbsI | GAAGAC | 1 cut(s) | 667 |
| Bbv12I | GWGCWC | 1 cut(s) | 640 |
| BbvI | GCAGC | 2 cut(s) | 195, 499 |
| BccI | CCATC | 1 cut(s) | 412 |
| BciVI | GTATCC | 1 cut(s) | 619 |
| BclI | TGATCA | 1 cut(s) | 286 |
| BcnI | CCSGG | 2 cut(s) | 592, 593 |
| BcoDI | GTCTC | 1 cut(s) | 151 |
| BfaI | CTAG | 3 cut(s) | 348, 360, 758 |
| BfmI | CTRYAG | 2 cut(s) | 220, 855 |
| BfuI | GTATCC | 1 cut(s) | 619 |
| BisI | GCNGC | 3 cut(s) | 209, 513, 894 |
| BlsI | GCNGC | 3 cut(s) | 210, 514, 895 |
| Bme1390I | CCNGG | 2 cut(s) | 592, 593 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmeT110I | CYCGRG | 1 cut(s) | 591 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 178 |
| BmrFI | CCNGG | 2 cut(s) | 592, 593 |
| BmtI | GCTAGC | 1 cut(s) | 351 |
| BpiI | GAAGAC | 1 cut(s) | 667 |
| BpmI | CTGGAG | 2 cut(s) | 478, 727 |
| BpuEI | CTTGAG | 1 cut(s) | 175 |
| BpuMI | CCSGG | 2 cut(s) | 592, 593 |
| BsaAI | YACGTR | 1 cut(s) | 737 |
| BsaHI | GRCGYC | 1 cut(s) | 905 |
| BsaI | GGTCTC | 1 cut(s) | 151 |
| BsaJI | CCNNGG | 2 cut(s) | 203, 591 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 415, 445, 556, 586, 700, 730 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 167, 251, 592 |
| Bse1I | ACTGG | 2 cut(s) | 495, 530 |
| BseDI | CCNNGG | 2 cut(s) | 203, 591 |
| BseGI | GGATG | 4 cut(s) | 51, 202, 343, 423 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 167, 251, 592 |
| BseNI | ACTGG | 2 cut(s) | 495, 530 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseSI | GKGCMC | 1 cut(s) | 640 |
| BseXI | GCAGC | 2 cut(s) | 195, 499 |
| BsiHKAI | GWGCWC | 1 cut(s) | 640 |
| BsiHKCI | CYCGRG | 1 cut(s) | 591 |
| BsiSI | CCGG | 1 cut(s) | 592 |
| BslFI | GGGAC | 2 cut(s) | 569, 867 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 167, 251, 592 |
| BsmAI | GTCTC | 1 cut(s) | 151 |
| BsmFI | GGGAC | 2 cut(s) | 569, 867 |
| Bso31I | GGTCTC | 1 cut(s) | 151 |
| BsoBI | CYCGRG | 1 cut(s) | 591 |
| Bsp1286I | GDGCHC | 1 cut(s) | 640 |
| Bsp143I | GATC | 2 cut(s) | 286, 383 |
| BspACI | CCGC | 1 cut(s) | 893 |
| BspHI | TCATGA | 1 cut(s) | 799 |
| BspLI | GGNNCC | 1 cut(s) | 178 |
| BspMAI | CTGCAG | 1 cut(s) | 859 |
| BspOI | GCTAGC | 1 cut(s) | 351 |
| BspPI | GGATC | 1 cut(s) | 391 |
| BspTNI | GGTCTC | 1 cut(s) | 151 |
| BsrI | ACTGG | 2 cut(s) | 495, 530 |
| BssECI | CCNNGG | 2 cut(s) | 203, 591 |
| BssMI | GATC | 2 cut(s) | 286, 383 |
| BssNAI | GTATAC | 1 cut(s) | 365 |
| BssNI | GRCGYC | 1 cut(s) | 905 |
| Bst1107I | GTATAC | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 3 cut(s) | 54, 234, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 604, 693 |
| BstACI | GRCGYC | 1 cut(s) | 905 |
| BstBAI | YACGTR | 1 cut(s) | 737 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 349 |
| BstDSI | CCRYGG | 1 cut(s) | 203 |
| BstF5I | GGATG | 4 cut(s) | 51, 202, 343, 423 |
| BstKTI | GATC | 2 cut(s) | 289, 386 |
| BstMAI | GTCTC | 1 cut(s) | 151 |
| BstMBI | GATC | 2 cut(s) | 286, 383 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 902 |
| BstNSI | RCATGY | 3 cut(s) | 83, 674, 779 |
| BstSCI | CCNGG | 2 cut(s) | 590, 591 |
| BstSFI | CTRYAG | 2 cut(s) | 220, 855 |
| BstSLI | GKGCMC | 1 cut(s) | 640 |
| BstSNI | TACGTA | 1 cut(s) | 737 |
| BstV1I | GCAGC | 2 cut(s) | 195, 499 |
| BstV2I | GAAGAC | 1 cut(s) | 667 |
| BstZ17I | GTATAC | 1 cut(s) | 365 |
| BsuI | GTATCC | 1 cut(s) | 619 |
| BtgI | CCRYGG | 1 cut(s) | 203 |
| BtsCI | GGATG | 4 cut(s) | 51, 202, 343, 423 |
| BtsI | GCAGTG | 1 cut(s) | 864 |
| BtsIMutI | CAGTG | 2 cut(s) | 436, 864 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 349 |
| CciI | TCATGA | 1 cut(s) | 799 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| Cfr9I | CCCGGG | 1 cut(s) | 591 |
| CseI | GACGC | 1 cut(s) | 894 |
| Csp6I | GTAC | 2 cut(s) | 255, 734 |
| CviAII | CATG | 8 cut(s) | 80, 111, 449, 653, 671, 765, 776, 800 |
| CviJI | RGCY | 7 cut(s) | 153, 208, 225, 347, 512, 568, 932 |
| CviKI_1 | RGCY | 7 cut(s) | 153, 208, 225, 347, 512, 568, 932 |
| CviQI | GTAC | 2 cut(s) | 255, 734 |
| DpnI | GATC | 2 cut(s) | 288, 385 |
| DpnII | GATC | 2 cut(s) | 286, 383 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 671 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 671 |
| Eam1104I | CTCTTC | 2 cut(s) | 604, 693 |
| EarI | CTCTTC | 2 cut(s) | 604, 693 |
| Eco105I | TACGTA | 1 cut(s) | 737 |
| Eco31I | GGTCTC | 1 cut(s) | 151 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 1 cut(s) | 678 |
| Eco88I | CYCGRG | 1 cut(s) | 591 |
| EcoO109I | RGGNCCY | 1 cut(s) | 277 |
| EcoT22I | ATGCAT | 1 cut(s) | 81 |
| FaeI | CATG | 8 cut(s) | 83, 114, 452, 656, 674, 768, 779, 803 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 538, 570 |
| FaqI | GGGAC | 2 cut(s) | 569, 867 |
| FatI | CATG | 8 cut(s) | 79, 110, 448, 652, 670, 764, 775, 799 |
| FauNDI | CATATG | 1 cut(s) | 939 |
| FbaI | TGATCA | 1 cut(s) | 286 |
| FblI | GTMKAC | 1 cut(s) | 364 |
| Fnu4HI | GCNGC | 3 cut(s) | 209, 513, 894 |
| FokI | GGATG | 4 cut(s) | 58, 209, 350, 430 |
| Fsp4HI | GCNGC | 3 cut(s) | 209, 513, 894 |
| FspBI | CTAG | 3 cut(s) | 348, 360, 758 |
| GluI | GCNGC | 3 cut(s) | 209, 513, 894 |
| GsuI | CTGGAG | 2 cut(s) | 478, 727 |
| HapII | CCGG | 1 cut(s) | 592 |
| HgaI | GACGC | 1 cut(s) | 894 |
| Hin1I | GRCGYC | 1 cut(s) | 905 |
| Hin1II | CATG | 8 cut(s) | 83, 114, 452, 656, 674, 768, 779, 803 |
| HincII | GTYRAC | 1 cut(s) | 873 |
| HindII | GTYRAC | 1 cut(s) | 873 |
| HindIII | AAGCTT | 1 cut(s) | 930 |
| HinfI | GANTC | 1 cut(s) | 769 |
| HpaII | CCGG | 1 cut(s) | 592 |
| HphI | GGTGA | 2 cut(s) | 107, 311 |
| Hpy166II | GTNNAC | 5 cut(s) | 333, 365, 391, 638, 873 |
| Hpy188I | TCNGA | 1 cut(s) | 70 |
| Hpy188III | TCNNGA | 8 cut(s) | 43, 134, 290, 323, 504, 623, 706, 800 |
| Hpy8I | GTNNAC | 5 cut(s) | 333, 365, 391, 638, 873 |
| HpyAV | CCTTC | 3 cut(s) | 121, 724, 859 |
| HpyCH4III | ACNGT | 3 cut(s) | 54, 234, 431 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 736, 875 |
| HpyCH4V | TGCA | 8 cut(s) | 79, 147, 638, 670, 764, 775, 857, 937 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 902 |
| HpySE526I | ACGT | 3 cut(s) | 99, 736, 875 |
| Hsp92I | GRCGYC | 1 cut(s) | 905 |
| Hsp92II | CATG | 8 cut(s) | 83, 114, 452, 656, 674, 768, 779, 803 |
| Ksp22I | TGATCA | 1 cut(s) | 286 |
| Kzo9I | GATC | 2 cut(s) | 286, 383 |
| LpnPI | CCDG | 8 cut(s) | 133, 275, 400, 508, 511, 605, 608, 691 |
| Lsp1109I | GCAGC | 2 cut(s) | 195, 499 |
| MaeI | CTAG | 3 cut(s) | 348, 360, 758 |
| MaeII | ACGT | 3 cut(s) | 99, 736, 875 |
| MaeIII | GTNAC | 2 cut(s) | 48, 95 |
| MalI | GATC | 2 cut(s) | 288, 385 |
| MboI | GATC | 2 cut(s) | 286, 383 |
| MboII | GAAGA | 5 cut(s) | 532, 621, 667, 671, 710 |
| MhlI | GDGCHC | 1 cut(s) | 640 |
| MluCI | AATT | 7 cut(s) | 87, 183, 262, 309, 326, 469, 724 |
| MmeI | TCCRAC | 1 cut(s) | 669 |
| Mph1103I | ATGCAT | 1 cut(s) | 81 |
| MroXI | GAANNNNTTC | 1 cut(s) | 264 |
| MseI | TTAA | 3 cut(s) | 32, 90, 186 |
| MslI | CAYNNNNRTG | 1 cut(s) | 780 |
| MspI | CCGG | 1 cut(s) | 592 |
| MspR9I | CCNGG | 2 cut(s) | 592, 593 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 902 |
| NciI | CCSGG | 2 cut(s) | 592, 593 |
| NdeI | CATATG | 1 cut(s) | 939 |
| NdeII | GATC | 2 cut(s) | 286, 383 |
| NheI | GCTAGC | 1 cut(s) | 347 |
| NlaIII | CATG | 8 cut(s) | 83, 114, 452, 656, 674, 768, 779, 803 |
| NlaIV | GGNNCC | 1 cut(s) | 178 |
| NmeAIII | GCCGAG | 1 cut(s) | 541 |
| NmuCI | GTSAC | 1 cut(s) | 95 |
| NsiI | ATGCAT | 1 cut(s) | 81 |
| NspI | RCATGY | 3 cut(s) | 83, 674, 779 |
| PaeI | GCATGC | 1 cut(s) | 83 |
| PagI | TCATGA | 1 cut(s) | 799 |
| PdmI | GAANNNNTTC | 1 cut(s) | 264 |
| PfeI | GAWTC | 1 cut(s) | 769 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 167 |
| PkrI | GCNGC | 3 cut(s) | 210, 514, 895 |
| Ppu21I | YACGTR | 1 cut(s) | 737 |
| PpuMI | RGGWCCY | 1 cut(s) | 277 |
| PshBI | ATTAAT | 1 cut(s) | 90 |
| Psp1406I | AACGTT | 1 cut(s) | 875 |
| Psp5II | RGGWCCY | 1 cut(s) | 277 |
| PspN4I | GGNNCC | 1 cut(s) | 178 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PspPPI | RGGWCCY | 1 cut(s) | 277 |
| PstI | CTGCAG | 1 cut(s) | 859 |
| RsaI | GTAC | 2 cut(s) | 256, 735 |
| RsaNI | GTAC | 2 cut(s) | 255, 734 |
| RseI | CAYNNNNRTG | 1 cut(s) | 780 |
| SaqAI | TTAA | 3 cut(s) | 32, 90, 186 |
| SatI | GCNGC | 3 cut(s) | 209, 513, 894 |
| Sau3AI | GATC | 2 cut(s) | 286, 383 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| ScrFI | CCNGG | 2 cut(s) | 592, 593 |
| SduI | GDGCHC | 1 cut(s) | 640 |
| SfcI | CTRYAG | 2 cut(s) | 220, 855 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SmaI | CCCGGG | 1 cut(s) | 593 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 780 |
| SmlI | CTYRAG | 1 cut(s) | 154 |
| SmoI | CTYRAG | 1 cut(s) | 154 |
| SnaBI | TACGTA | 1 cut(s) | 737 |
| SphI | GCATGC | 1 cut(s) | 83 |
| Sse9I | AATT | 7 cut(s) | 87, 183, 262, 309, 326, 469, 724 |
| SsiI | CCGC | 1 cut(s) | 893 |
| SspMI | CTAG | 3 cut(s) | 348, 360, 758 |
| StyD4I | CCNGG | 2 cut(s) | 590, 591 |
| TaaI | ACNGT | 3 cut(s) | 54, 234, 431 |
| TaiI | ACGT | 3 cut(s) | 102, 739, 878 |
| TasI | AATT | 7 cut(s) | 87, 183, 262, 309, 326, 469, 724 |
| TauI | GCSGC | 1 cut(s) | 896 |
| TfiI | GAWTC | 1 cut(s) | 769 |
| Tru1I | TTAA | 3 cut(s) | 32, 90, 186 |
| Tru9I | TTAA | 3 cut(s) | 32, 90, 186 |
| TscAI | CASTG | 2 cut(s) | 436, 864 |
| TseFI | GTSAC | 1 cut(s) | 95 |
| TseI | GCWGC | 2 cut(s) | 208, 512 |
| Tsp45I | GTSAC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 140 |
| TspGWI | ACGGA | 1 cut(s) | 350 |
| TspMI | CCCGGG | 1 cut(s) | 591 |
| TspRI | CASTG | 2 cut(s) | 436, 864 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 167 |
| VneI | GTGCAC | 1 cut(s) | 636 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| VspI | ATTAAT | 1 cut(s) | 90 |
| XapI | RAATTY | 3 cut(s) | 262, 469, 724 |
| XceI | RCATGY | 3 cut(s) | 83, 674, 779 |
| XmaI | CCCGGG | 1 cut(s) | 591 |
| XmiI | GTMKAC | 1 cut(s) | 364 |
| XmnI | GAANNNNTTC | 1 cut(s) | 264 |
| XspI | CTAG | 3 cut(s) | 348, 360, 758 |
| Zsp2I | ATGCAT | 1 cut(s) | 81 |