Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SWIM | PF04434 | 217 - 245 | 9.6e-09 | SWIM zinc finger |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 516 |
| AciI | CCGC | 2 cut(s) | 540, 755 |
| AcsI | RAATTY | 6 cut(s) | 161, 288, 365, 510, 624, 736 |
| AcuI | CTGAAG | 3 cut(s) | 247, 633, 788 |
| AfaI | GTAC | 3 cut(s) | 447, 469, 588 |
| AflII | CTTAAG | 2 cut(s) | 97, 406 |
| AflIII | ACRYGT | 1 cut(s) | 665 |
| AluBI | AGCT | 5 cut(s) | 93, 267, 535, 640, 672 |
| AluI | AGCT | 5 cut(s) | 93, 267, 535, 640, 672 |
| Alw21I | GWGCWC | 1 cut(s) | 317 |
| Alw26I | GTCTC | 3 cut(s) | 143, 220, 416 |
| ApeKI | GCWGC | 2 cut(s) | 344, 672 |
| ApoI | RAATTY | 6 cut(s) | 161, 288, 365, 510, 624, 736 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 122, 369 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AsuNHI | GCTAGC | 1 cut(s) | 542 |
| BaeGI | GKGCMC | 1 cut(s) | 808 |
| Bbv12I | GWGCWC | 1 cut(s) | 317 |
| BbvI | GCAGC | 2 cut(s) | 331, 659 |
| BccI | CCATC | 1 cut(s) | 553 |
| BcoDI | GTCTC | 3 cut(s) | 143, 220, 416 |
| BfaI | CTAG | 3 cut(s) | 285, 543, 795 |
| BfrI | CTTAAG | 2 cut(s) | 97, 406 |
| BisI | GCNGC | 2 cut(s) | 345, 673 |
| BlsI | GCNGC | 2 cut(s) | 346, 674 |
| BmcAI | AGTACT | 1 cut(s) | 469 |
| BmsI | GCATC | 1 cut(s) | 775 |
| BmtI | GCTAGC | 1 cut(s) | 546 |
| Bse3DI | GCAATG | 1 cut(s) | 430 |
| BseGI | GGATG | 3 cut(s) | 184, 568, 790 |
| BseMI | GCAATG | 1 cut(s) | 430 |
| BseMII | CTCAG | 1 cut(s) | 522 |
| BseRI | GAGGAG | 1 cut(s) | 478 |
| BseSI | GKGCMC | 1 cut(s) | 808 |
| BseXI | GCAGC | 2 cut(s) | 331, 659 |
| BsiHKAI | GWGCWC | 1 cut(s) | 317 |
| BslFI | GGGAC | 1 cut(s) | 541 |
| BsmAI | GTCTC | 3 cut(s) | 143, 220, 416 |
| BsmFI | GGGAC | 1 cut(s) | 541 |
| BsmI | GAATGC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 317, 808 |
| Bsp1407I | TGTACA | 1 cut(s) | 586 |
| BspACI | CCGC | 2 cut(s) | 540, 755 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspOI | GCTAGC | 1 cut(s) | 546 |
| BspTI | CTTAAG | 2 cut(s) | 97, 406 |
| BsrDI | GCAATG | 1 cut(s) | 430 |
| BsrGI | TGTACA | 1 cut(s) | 586 |
| Bst4CI | ACNGT | 3 cut(s) | 44, 154, 586 |
| Bst6I | CTCTTC | 2 cut(s) | 414, 652 |
| BstAFI | CTTAAG | 2 cut(s) | 97, 406 |
| BstAUI | TGTACA | 1 cut(s) | 586 |
| BstC8I | GCNNGC | 2 cut(s) | 91, 544 |
| BstDEI | CTNAG | 4 cut(s) | 459, 531, 716, 744 |
| BstF5I | GGATG | 3 cut(s) | 184, 568, 790 |
| BstMAI | GTCTC | 3 cut(s) | 143, 220, 416 |
| BstNSI | RCATGY | 1 cut(s) | 669 |
| BstSLI | GKGCMC | 1 cut(s) | 808 |
| BstV1I | GCAGC | 2 cut(s) | 331, 659 |
| BtsCI | GGATG | 3 cut(s) | 184, 568, 790 |
| Cac8I | GCNNGC | 2 cut(s) | 91, 544 |
| Csp6I | GTAC | 3 cut(s) | 446, 468, 587 |
| CviAII | CATG | 5 cut(s) | 485, 547, 666, 710, 815 |
| CviJI | RGCY | 6 cut(s) | 93, 267, 358, 535, 640, 672 |
| CviKI_1 | RGCY | 6 cut(s) | 93, 267, 358, 535, 640, 672 |
| CviQI | GTAC | 3 cut(s) | 446, 468, 587 |
| DdeI | CTNAG | 4 cut(s) | 459, 531, 716, 744 |
| Eam1104I | CTCTTC | 2 cut(s) | 414, 652 |
| EarI | CTCTTC | 2 cut(s) | 414, 652 |
| Eco57I | CTGAAG | 3 cut(s) | 247, 633, 788 |
| EcoRI | GAATTC | 1 cut(s) | 288 |
| FaeI | CATG | 5 cut(s) | 488, 550, 669, 713, 818 |
| FaqI | GGGAC | 1 cut(s) | 541 |
| FatI | CATG | 5 cut(s) | 484, 546, 665, 709, 814 |
| Fnu4HI | GCNGC | 2 cut(s) | 345, 673 |
| FokI | GGATG | 3 cut(s) | 191, 575, 797 |
| Fsp4HI | GCNGC | 2 cut(s) | 345, 673 |
| FspBI | CTAG | 3 cut(s) | 285, 543, 795 |
| GluI | GCNGC | 2 cut(s) | 345, 673 |
| Hin1II | CATG | 5 cut(s) | 488, 550, 669, 713, 818 |
| HinfI | GANTC | 3 cut(s) | 102, 604, 686 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 1 cut(s) | 652 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 115, 556, 608, 795 |
| HpyAV | CCTTC | 2 cut(s) | 271, 459 |
| HpyCH4III | ACNGT | 3 cut(s) | 44, 154, 586 |
| HpyCH4IV | ACGT | 1 cut(s) | 444 |
| HpyCH4V | TGCA | 8 cut(s) | 74, 158, 257, 347, 435, 618, 675, 788 |
| HpyF3I | CTNAG | 4 cut(s) | 459, 531, 716, 744 |
| HpySE526I | ACGT | 1 cut(s) | 444 |
| Hsp92II | CATG | 5 cut(s) | 488, 550, 669, 713, 818 |
| LpnPI | CCDG | 4 cut(s) | 42, 120, 474, 593 |
| Lsp1109I | GCAGC | 2 cut(s) | 331, 659 |
| LweI | GCATC | 1 cut(s) | 775 |
| MaeI | CTAG | 3 cut(s) | 285, 543, 795 |
| MaeII | ACGT | 1 cut(s) | 444 |
| MaeIII | GTNAC | 4 cut(s) | 38, 183, 190, 202 |
| MboII | GAAGA | 3 cut(s) | 130, 431, 639 |
| MhlI | GDGCHC | 2 cut(s) | 317, 808 |
| MlyI | GAGTC | 1 cut(s) | 613 |
| MmeI | TCCRAC | 1 cut(s) | 755 |
| MnlI | CCTC | 4 cut(s) | 348, 456, 604, 726 |
| MroXI | GAANNNNTTC | 2 cut(s) | 122, 369 |
| MseI | TTAA | 4 cut(s) | 98, 198, 222, 407 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| MspCI | CTTAAG | 2 cut(s) | 97, 406 |
| Mva1269I | GAATGC | 1 cut(s) | 76 |
| NheI | GCTAGC | 1 cut(s) | 542 |
| NlaIII | CATG | 5 cut(s) | 488, 550, 669, 713, 818 |
| NmuCI | GTSAC | 2 cut(s) | 38, 190 |
| NspI | RCATGY | 1 cut(s) | 669 |
| PciI | ACATGT | 1 cut(s) | 665 |
| PctI | GAATGC | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 2 cut(s) | 122, 369 |
| PfeI | GAWTC | 2 cut(s) | 102, 686 |
| PkrI | GCNGC | 2 cut(s) | 346, 674 |
| PleI | GAGTC | 1 cut(s) | 612 |
| PpsI | GAGTC | 1 cut(s) | 612 |
| PscI | ACATGT | 1 cut(s) | 665 |
| PsiI | TTATAA | 1 cut(s) | 516 |
| RsaI | GTAC | 3 cut(s) | 447, 469, 588 |
| RsaNI | GTAC | 3 cut(s) | 446, 468, 587 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SaqAI | TTAA | 4 cut(s) | 98, 198, 222, 407 |
| SatI | GCNGC | 2 cut(s) | 345, 673 |
| ScaI | AGTACT | 1 cut(s) | 469 |
| SchI | GAGTC | 1 cut(s) | 613 |
| SduI | GDGCHC | 2 cut(s) | 317, 808 |
| SetI | ASST | 9 cut(s) | 95, 263, 269, 278, 447, 451, 537, 642, 674 |
| SfaNI | GCATC | 1 cut(s) | 775 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 2 cut(s) | 97, 406 |
| SmoI | CTYRAG | 2 cut(s) | 97, 406 |
| SsiI | CCGC | 2 cut(s) | 540, 755 |
| SspMI | CTAG | 3 cut(s) | 285, 543, 795 |
| TaaI | ACNGT | 3 cut(s) | 44, 154, 586 |
| TaiI | ACGT | 1 cut(s) | 447 |
| TatI | WGTACW | 2 cut(s) | 467, 586 |
| TfiI | GAWTC | 2 cut(s) | 102, 686 |
| Tru1I | TTAA | 4 cut(s) | 98, 198, 222, 407 |
| Tru9I | TTAA | 4 cut(s) | 98, 198, 222, 407 |
| TseFI | GTSAC | 2 cut(s) | 38, 190 |
| TseI | GCWGC | 2 cut(s) | 344, 672 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 190 |
| TspDTI | ATGAA | 7 cut(s) | 228, 320, 362, 419, 579, 594, 831 |
| TspGWI | ACGGA | 1 cut(s) | 256 |
| Vha464I | CTTAAG | 2 cut(s) | 97, 406 |
| XapI | RAATTY | 6 cut(s) | 161, 288, 365, 510, 624, 736 |
| XbaI | TCTAGA | 1 cut(s) | 794 |
| XceI | RCATGY | 1 cut(s) | 669 |
| XmnI | GAANNNNTTC | 2 cut(s) | 122, 369 |
| XspI | CTAG | 3 cut(s) | 285, 543, 795 |
| ZrmI | AGTACT | 1 cut(s) | 469 |