ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 53 |
| Acc36I | ACCTGC | 1 cut(s) | 53 |
| AccB1I | GGYRCC | 1 cut(s) | 170 |
| AccI | GTMKAC | 1 cut(s) | 428 |
| AccII | CGCG | 1 cut(s) | 240 |
| AccIII | TCCGGA | 1 cut(s) | 409 |
| AciI | CCGC | 2 cut(s) | 73, 240 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 55 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 415, 447 |
| AluBI | AGCT | 1 cut(s) | 158 |
| AluI | AGCT | 1 cut(s) | 158 |
| Aor13HI | TCCGGA | 1 cut(s) | 409 |
| AoxI | GGCC | 2 cut(s) | 353, 377 |
| ApeKI | GCWGC | 1 cut(s) | 155 |
| AspLEI | GCGC | 2 cut(s) | 129, 240 |
| AspS9I | GGNCC | 1 cut(s) | 377 |
| AsuHPI | GGTGA | 1 cut(s) | 213 |
| AsuII | TTCGAA | 1 cut(s) | 268 |
| AxyI | CCTNAGG | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 170 |
| BbvI | GCAGC | 1 cut(s) | 167 |
| BccI | CCATC | 2 cut(s) | 117, 365 |
| BclI | TGATCA | 2 cut(s) | 322, 450 |
| BfaI | CTAG | 2 cut(s) | 159, 336 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BfuAI | ACCTGC | 1 cut(s) | 53 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BisI | GCNGC | 2 cut(s) | 156, 241 |
| BlsI | GCNGC | 2 cut(s) | 157, 242 |
| BmgT120I | GGNCC | 1 cut(s) | 377 |
| BmiI | GGNNCC | 2 cut(s) | 172, 378 |
| BmsI | GCATC | 2 cut(s) | 60, 450 |
| Bpu14I | TTCGAA | 1 cut(s) | 268 |
| BsaWI | WCCGGW | 1 cut(s) | 409 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 55 |
| Bse21I | CCTNAGG | 1 cut(s) | 54 |
| BseAI | TCCGGA | 1 cut(s) | 409 |
| BseGI | GGATG | 4 cut(s) | 75, 128, 325, 376 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 55 |
| BseXI | GCAGC | 1 cut(s) | 167 |
| Bsh1236I | CGCG | 1 cut(s) | 240 |
| BshFI | GGCC | 2 cut(s) | 355, 379 |
| BshNI | GGYRCC | 1 cut(s) | 170 |
| BsiSI | CCGG | 1 cut(s) | 410 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 55 |
| BsnI | GGCC | 2 cut(s) | 355, 379 |
| Bsp119I | TTCGAA | 1 cut(s) | 268 |
| Bsp13I | TCCGGA | 1 cut(s) | 409 |
| Bsp143I | GATC | 3 cut(s) | 82, 322, 450 |
| BspACI | CCGC | 2 cut(s) | 73, 240 |
| BspANI | GGCC | 2 cut(s) | 355, 379 |
| BspEI | TCCGGA | 1 cut(s) | 409 |
| BspFNI | CGCG | 1 cut(s) | 240 |
| BspLI | GGNNCC | 2 cut(s) | 172, 378 |
| BspMI | ACCTGC | 1 cut(s) | 53 |
| BspT104I | TTCGAA | 1 cut(s) | 268 |
| BspT107I | GGYRCC | 1 cut(s) | 170 |
| BssMI | GATC | 3 cut(s) | 82, 322, 450 |
| Bst6I | CTCTTC | 1 cut(s) | 256 |
| BstBI | TTCGAA | 1 cut(s) | 268 |
| BstDEI | CTNAG | 2 cut(s) | 6, 54 |
| BstF5I | GGATG | 4 cut(s) | 75, 128, 325, 376 |
| BstFNI | CGCG | 1 cut(s) | 240 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 2 cut(s) | 129, 240 |
| BstKTI | GATC | 3 cut(s) | 85, 325, 453 |
| BstMBI | GATC | 3 cut(s) | 82, 322, 450 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 135 |
| BstNSI | RCATGY | 3 cut(s) | 92, 234, 290 |
| BstUI | CGCG | 1 cut(s) | 240 |
| BstV1I | GCAGC | 1 cut(s) | 167 |
| BstX2I | RGATCY | 1 cut(s) | 82 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 82 |
| Bsu36I | CCTNAGG | 1 cut(s) | 54 |
| BsuRI | GGCC | 2 cut(s) | 355, 379 |
| BtsCI | GGATG | 4 cut(s) | 75, 128, 325, 376 |
| BtsIMutI | CAGTG | 2 cut(s) | 332, 460 |
| BveI | ACCTGC | 1 cut(s) | 53 |
| CfoI | GCGC | 2 cut(s) | 129, 240 |
| Cfr13I | GGNCC | 1 cut(s) | 377 |
| CviAII | CATG | 4 cut(s) | 89, 231, 287, 311 |
| CviJI | RGCY | 7 cut(s) | 5, 28, 38, 113, 158, 355, 379 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 28, 38, 113, 158, 355, 379 |
| DdeI | CTNAG | 2 cut(s) | 6, 54 |
| DpnI | GATC | 3 cut(s) | 84, 324, 452 |
| DpnII | GATC | 3 cut(s) | 82, 322, 450 |
| Eam1104I | CTCTTC | 1 cut(s) | 256 |
| EarI | CTCTTC | 1 cut(s) | 256 |
| Eco147I | AGGCCT | 1 cut(s) | 355 |
| Eco81I | CCTNAGG | 1 cut(s) | 54 |
| EcoO109I | RGGNCCY | 1 cut(s) | 377 |
| FaeI | CATG | 4 cut(s) | 92, 234, 290, 314 |
| FaiI | YATR | 9 cut(s) | 90, 136, 168, 232, 278, 288, 312, 366, 368 |
| FatI | CATG | 4 cut(s) | 88, 230, 286, 310 |
| FauNDI | CATATG | 1 cut(s) | 366 |
| FbaI | TGATCA | 2 cut(s) | 322, 450 |
| FblI | GTMKAC | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 2 cut(s) | 156, 241 |
| FokI | GGATG | 4 cut(s) | 82, 135, 332, 383 |
| Fsp4HI | GCNGC | 2 cut(s) | 156, 241 |
| FspBI | CTAG | 2 cut(s) | 159, 336 |
| GlaI | GCGC | 2 cut(s) | 128, 239 |
| GluI | GCNGC | 2 cut(s) | 156, 241 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 2 cut(s) | 355, 379 |
| HapII | CCGG | 1 cut(s) | 410 |
| HhaI | GCGC | 2 cut(s) | 129, 240 |
| Hin1II | CATG | 4 cut(s) | 92, 234, 290, 314 |
| Hin6I | GCGC | 2 cut(s) | 127, 238 |
| HinP1I | GCGC | 2 cut(s) | 127, 238 |
| HincII | GTYRAC | 1 cut(s) | 429 |
| HindII | GTYRAC | 1 cut(s) | 429 |
| HinfI | GANTC | 4 cut(s) | 10, 19, 331, 413 |
| HpaII | CCGG | 1 cut(s) | 410 |
| HphI | GGTGA | 1 cut(s) | 213 |
| Hpy166II | GTNNAC | 1 cut(s) | 429 |
| Hpy188I | TCNGA | 2 cut(s) | 15, 80 |
| Hpy188III | TCNNGA | 1 cut(s) | 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 429 |
| HpyAV | CCTTC | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 5 cut(s) | 92, 138, 230, 438, 463 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 135 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 54 |
| Hsp92II | CATG | 4 cut(s) | 92, 234, 290, 314 |
| HspAI | GCGC | 2 cut(s) | 127, 238 |
| Kpn2I | TCCGGA | 1 cut(s) | 409 |
| Ksp22I | TGATCA | 2 cut(s) | 322, 450 |
| Kzo9I | GATC | 3 cut(s) | 82, 322, 450 |
| LpnPI | CCDG | 5 cut(s) | 48, 337, 354, 369, 423 |
| Lsp1109I | GCAGC | 1 cut(s) | 167 |
| LweI | GCATC | 2 cut(s) | 60, 450 |
| MaeI | CTAG | 2 cut(s) | 159, 336 |
| MaeIII | GTNAC | 2 cut(s) | 301, 343 |
| MalI | GATC | 3 cut(s) | 84, 324, 452 |
| MboI | GATC | 3 cut(s) | 82, 322, 450 |
| MboII | GAAGA | 2 cut(s) | 28, 243 |
| MflI | RGATCY | 1 cut(s) | 82 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MnlI | CCTC | 2 cut(s) | 285, 390 |
| MroI | TCCGGA | 1 cut(s) | 409 |
| MslI | CAYNNNNRTG | 1 cut(s) | 369 |
| MspI | CCGG | 1 cut(s) | 410 |
| MvnI | CGCG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 135 |
| NdeI | CATATG | 1 cut(s) | 366 |
| NdeII | GATC | 3 cut(s) | 82, 322, 450 |
| NlaIII | CATG | 4 cut(s) | 92, 234, 290, 314 |
| NlaIV | GGNNCC | 2 cut(s) | 172, 378 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| NspI | RCATGY | 3 cut(s) | 92, 234, 290 |
| NspV | TTCGAA | 1 cut(s) | 268 |
| PaqCI | CACCTGC | 1 cut(s) | 53 |
| PceI | AGGCCT | 1 cut(s) | 355 |
| PfeI | GAWTC | 3 cut(s) | 10, 19, 331 |
| PkrI | GCNGC | 2 cut(s) | 157, 242 |
| PleI | GAGTC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 407 |
| PspN4I | GGNNCC | 2 cut(s) | 172, 378 |
| PspPI | GGNCC | 1 cut(s) | 377 |
| PsuI | RGATCY | 1 cut(s) | 82 |
| RseI | CAYNNNNRTG | 1 cut(s) | 369 |
| SalI | GTCGAC | 1 cut(s) | 427 |
| SatI | GCNGC | 2 cut(s) | 156, 241 |
| Sau3AI | GATC | 3 cut(s) | 82, 322, 450 |
| Sau96I | GGNCC | 1 cut(s) | 377 |
| SchI | GAGTC | 1 cut(s) | 407 |
| SetI | ASST | 7 cut(s) | 55, 67, 160, 193, 226, 284, 343 |
| SfaNI | GCATC | 2 cut(s) | 60, 450 |
| SfuI | TTCGAA | 1 cut(s) | 268 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 369 |
| SseBI | AGGCCT | 1 cut(s) | 355 |
| SsiI | CCGC | 2 cut(s) | 73, 240 |
| SspMI | CTAG | 2 cut(s) | 159, 336 |
| StuI | AGGCCT | 1 cut(s) | 355 |
| TaqI | TCGA | 2 cut(s) | 268, 428 |
| TauI | GCSGC | 1 cut(s) | 243 |
| TfiI | GAWTC | 3 cut(s) | 10, 19, 331 |
| TscAI | CASTG | 2 cut(s) | 332, 460 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| TseI | GCWGC | 1 cut(s) | 155 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 4 cut(s) | 11, 299, 312, 353 |
| TspRI | CASTG | 2 cut(s) | 332, 460 |
| XceI | RCATGY | 3 cut(s) | 92, 234, 290 |
| XmiI | GTMKAC | 1 cut(s) | 428 |
| XspI | CTAG | 2 cut(s) | 159, 336 |