Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 53 - 164 | 1.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 1 cut(s) | 68 |
| AfaI | GTAC | 2 cut(s) | 105, 258 |
| AgsI | TTSAA | 1 cut(s) | 368 |
| AjnI | CCWGG | 1 cut(s) | 139 |
| AluBI | AGCT | 6 cut(s) | 47, 80, 239, 310, 362, 387 |
| AluI | AGCT | 6 cut(s) | 47, 80, 239, 310, 362, 387 |
| Alw21I | GWGCWC | 1 cut(s) | 389 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 254 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 4 cut(s) | 239, 248, 302, 463 |
| ApoI | RAATTY | 1 cut(s) | 68 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 23, 55 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 363 |
| AsuII | TTCGAA | 1 cut(s) | 427 |
| BanII | GRGCYC | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 1 cut(s) | 389 |
| BbvI | GCAGC | 4 cut(s) | 226, 260, 289, 475 |
| BccI | CCATC | 3 cut(s) | 5, 158, 324 |
| BciT130I | CCWGG | 1 cut(s) | 141 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BfaI | CTAG | 2 cut(s) | 44, 474 |
| BfmI | CTRYAG | 1 cut(s) | 303 |
| BisI | GCNGC | 4 cut(s) | 240, 249, 303, 464 |
| BlsI | GCNGC | 4 cut(s) | 241, 250, 304, 465 |
| Bme1390I | CCNGG | 1 cut(s) | 141 |
| BmrFI | CCNGG | 1 cut(s) | 141 |
| BmrI | ACTGGG | 1 cut(s) | 210 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BmuI | ACTGGG | 1 cut(s) | 210 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 376, 408 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| Bpu14I | TTCGAA | 1 cut(s) | 427 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 270 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| Bse3DI | GCAATG | 2 cut(s) | 337, 458 |
| BseBI | CCWGG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 2 cut(s) | 140, 270 |
| BseGI | GGATG | 2 cut(s) | 16, 169 |
| BseMI | GCAATG | 2 cut(s) | 337, 458 |
| BseMII | CTCAG | 3 cut(s) | 81, 276, 423 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BseXI | GCAGC | 4 cut(s) | 226, 260, 289, 475 |
| Bsh1285I | CGRYCG | 1 cut(s) | 405 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BsiEI | CGRYCG | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 389 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp119I | TTCGAA | 1 cut(s) | 427 |
| Bsp1286I | GDGCHC | 1 cut(s) | 389 |
| Bsp1407I | TGTACA | 1 cut(s) | 256 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 3 cut(s) | 82, 275, 424 |
| BspMAI | CTGCAG | 1 cut(s) | 307 |
| BspT104I | TTCGAA | 1 cut(s) | 427 |
| BsrDI | GCAATG | 2 cut(s) | 337, 458 |
| BsrGI | TGTACA | 1 cut(s) | 256 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 2 cut(s) | 140, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 1 cut(s) | 99 |
| BstAUI | TGTACA | 1 cut(s) | 256 |
| BstBI | TTCGAA | 1 cut(s) | 427 |
| BstDEI | CTNAG | 5 cut(s) | 84, 90, 262, 355, 432 |
| BstF5I | GGATG | 2 cut(s) | 16, 169 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMCI | CGRYCG | 1 cut(s) | 405 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 245, 248, 302, 445 |
| BstNI | CCWGG | 1 cut(s) | 141 |
| BstSCI | CCNGG | 1 cut(s) | 139 |
| BstSFI | CTRYAG | 1 cut(s) | 303 |
| BstV1I | GCAGC | 4 cut(s) | 226, 260, 289, 475 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 147 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtsCI | GGATG | 2 cut(s) | 16, 169 |
| CaiI | CAGNNNCTG | 1 cut(s) | 254 |
| Csp6I | GTAC | 2 cut(s) | 104, 257 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 379, 414 |
| CviAII | CATG | 2 cut(s) | 57, 191 |
| CviQI | GTAC | 2 cut(s) | 104, 257 |
| DdeI | CTNAG | 5 cut(s) | 84, 90, 262, 355, 432 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Ecl136II | GAGCTC | 1 cut(s) | 387 |
| Eco24I | GRGCYC | 1 cut(s) | 389 |
| Eco53kI | GAGCTC | 1 cut(s) | 387 |
| EcoICRI | GAGCTC | 1 cut(s) | 387 |
| EcoRII | CCWGG | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 389 |
| FaeI | CATG | 2 cut(s) | 60, 194 |
| FaiI | YATR | 5 cut(s) | 58, 192, 292, 374, 396 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FatI | CATG | 2 cut(s) | 56, 190 |
| Fnu4HI | GCNGC | 4 cut(s) | 240, 249, 303, 464 |
| FokI | GGATG | 2 cut(s) | 23, 176 |
| FriOI | GRGCYC | 1 cut(s) | 389 |
| Fsp4HI | GCNGC | 4 cut(s) | 240, 249, 303, 464 |
| FspBI | CTAG | 2 cut(s) | 44, 474 |
| GluI | GCNGC | 4 cut(s) | 240, 249, 303, 464 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| Hin1II | CATG | 2 cut(s) | 60, 194 |
| Hpy166II | GTNNAC | 1 cut(s) | 259 |
| Hpy188I | TCNGA | 1 cut(s) | 183 |
| Hpy188III | TCNNGA | 1 cut(s) | 368 |
| Hpy8I | GTNNAC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 7 cut(s) | 56, 224, 242, 248, 305, 322, 463 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 245, 248, 302, 445 |
| HpyF3I | CTNAG | 5 cut(s) | 84, 90, 262, 355, 432 |
| Hsp92II | CATG | 2 cut(s) | 60, 194 |
| LmnI | GCTCC | 1 cut(s) | 392 |
| LpnPI | CCDG | 7 cut(s) | 47, 126, 153, 186, 210, 266, 267 |
| Lsp1109I | GCAGC | 4 cut(s) | 226, 260, 289, 475 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 2 cut(s) | 44, 474 |
| MboII | GAAGA | 2 cut(s) | 77, 419 |
| MhlI | GDGCHC | 1 cut(s) | 389 |
| MluCI | AATT | 2 cut(s) | 68, 152 |
| MmeI | TCCRAC | 1 cut(s) | 128 |
| MnlI | CCTC | 3 cut(s) | 277, 280, 470 |
| MroXI | GAANNNNTTC | 1 cut(s) | 363 |
| MseI | TTAA | 1 cut(s) | 155 |
| MspR9I | CCNGG | 1 cut(s) | 141 |
| MvaI | CCWGG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 245, 248, 302, 445 |
| NlaIII | CATG | 2 cut(s) | 60, 194 |
| NmeAIII | GCCGAG | 1 cut(s) | 251 |
| NspV | TTCGAA | 1 cut(s) | 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 363 |
| PkrI | GCNGC | 4 cut(s) | 241, 250, 304, 465 |
| Psp124BI | GAGCTC | 1 cut(s) | 389 |
| Psp6I | CCWGG | 1 cut(s) | 139 |
| PspGI | CCWGG | 1 cut(s) | 139 |
| PstI | CTGCAG | 1 cut(s) | 307 |
| PstNI | CAGNNNCTG | 1 cut(s) | 254 |
| RsaI | GTAC | 2 cut(s) | 105, 258 |
| RsaNI | GTAC | 2 cut(s) | 104, 257 |
| SacI | GAGCTC | 1 cut(s) | 389 |
| SaqAI | TTAA | 1 cut(s) | 155 |
| SatI | GCNGC | 4 cut(s) | 240, 249, 303, 464 |
| ScrFI | CCNGG | 1 cut(s) | 141 |
| SduI | GDGCHC | 1 cut(s) | 389 |
| SetI | ASST | 8 cut(s) | 49, 82, 241, 312, 364, 389, 475, 481 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SfcI | CTRYAG | 1 cut(s) | 303 |
| SfuI | TTCGAA | 1 cut(s) | 427 |
| Sse9I | AATT | 2 cut(s) | 68, 152 |
| SspI | AATATT | 1 cut(s) | 210 |
| SspMI | CTAG | 2 cut(s) | 44, 474 |
| SstI | GAGCTC | 1 cut(s) | 389 |
| StyD4I | CCNGG | 1 cut(s) | 139 |
| TaaI | ACNGT | 1 cut(s) | 99 |
| TaqI | TCGA | 4 cut(s) | 76, 235, 417, 427 |
| TaqII | GACCGA | 1 cut(s) | 419 |
| TasI | AATT | 2 cut(s) | 68, 152 |
| TatI | WGTACW | 1 cut(s) | 256 |
| Tru1I | TTAA | 1 cut(s) | 155 |
| Tru9I | TTAA | 1 cut(s) | 155 |
| TseI | GCWGC | 4 cut(s) | 239, 248, 302, 463 |
| TspDTI | ATGAA | 1 cut(s) | 447 |
| XapI | RAATTY | 1 cut(s) | 68 |
| XmnI | GAANNNNTTC | 1 cut(s) | 363 |
| XspI | CTAG | 2 cut(s) | 44, 474 |