Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 147 - 264 | 3.5e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 210 |
| AcsI | RAATTY | 1 cut(s) | 875 |
| AcuI | CTGAAG | 1 cut(s) | 231 |
| AfaI | GTAC | 4 cut(s) | 141, 303, 381, 688 |
| AflIII | ACRYGT | 1 cut(s) | 382 |
| AgsI | TTSAA | 4 cut(s) | 396, 427, 620, 727 |
| AjnI | CCWGG | 1 cut(s) | 447 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 33, 262, 294 |
| AluBI | AGCT | 5 cut(s) | 104, 266, 485, 578, 659 |
| AluI | AGCT | 5 cut(s) | 104, 266, 485, 578, 659 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| ApeKI | GCWGC | 1 cut(s) | 101 |
| ApoI | RAATTY | 1 cut(s) | 875 |
| AspLEI | GCGC | 1 cut(s) | 211 |
| AspS9I | GGNCC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 779 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BbsI | GAAGAC | 2 cut(s) | 434, 575 |
| BbvCI | CCTCAGC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 113 |
| BccI | CCATC | 5 cut(s) | 46, 659, 712, 821, 860 |
| BciT130I | CCWGG | 1 cut(s) | 449 |
| BciVI | GTATCC | 2 cut(s) | 128, 191 |
| BfaI | CTAG | 6 cut(s) | 258, 267, 486, 579, 656, 795 |
| BfuI | GTATCC | 2 cut(s) | 128, 191 |
| BisI | GCNGC | 1 cut(s) | 102 |
| BlsI | GCNGC | 1 cut(s) | 103 |
| BmcAI | AGTACT | 1 cut(s) | 688 |
| Bme1390I | CCNGG | 1 cut(s) | 449 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 1 cut(s) | 449 |
| BmrI | ACTGGG | 1 cut(s) | 535 |
| BmuI | ACTGGG | 1 cut(s) | 535 |
| BpiI | GAAGAC | 2 cut(s) | 434, 575 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 274, 306 |
| Bpu10I | CCTNAGC | 1 cut(s) | 564 |
| BsaBI | GATNNNNATC | 2 cut(s) | 705, 831 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 13, 43, 451, 481, 660, 690 |
| Bse1I | ACTGG | 1 cut(s) | 541 |
| Bse3DI | GCAATG | 2 cut(s) | 225, 588 |
| Bse8I | GATNNNNATC | 2 cut(s) | 705, 831 |
| BseBI | CCWGG | 1 cut(s) | 449 |
| BseGI | GGATG | 5 cut(s) | 382, 496, 832, 856, 871 |
| BseJI | GATNNNNATC | 2 cut(s) | 705, 831 |
| BseMI | GCAATG | 2 cut(s) | 225, 588 |
| BseMII | CTCAG | 2 cut(s) | 305, 555 |
| BseNI | ACTGG | 1 cut(s) | 541 |
| BseRI | GAGGAG | 2 cut(s) | 59, 110 |
| BseXI | GCAGC | 1 cut(s) | 113 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BslFI | GGGAC | 1 cut(s) | 886 |
| BsmFI | GGGAC | 1 cut(s) | 886 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp1407I | TGTACA | 1 cut(s) | 379 |
| Bsp143I | GATC | 2 cut(s) | 31, 797 |
| BspCNI | CTCAG | 2 cut(s) | 304, 556 |
| BsrDI | GCAATG | 2 cut(s) | 225, 588 |
| BsrGI | TGTACA | 1 cut(s) | 379 |
| BsrI | ACTGG | 1 cut(s) | 541 |
| BssMI | GATC | 2 cut(s) | 31, 797 |
| Bst2UI | CCWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 1 cut(s) | 635 |
| Bst6I | CTCTTC | 2 cut(s) | 87, 250 |
| BstAUI | TGTACA | 1 cut(s) | 379 |
| BstC8I | GCNNGC | 1 cut(s) | 651 |
| BstDEI | CTNAG | 2 cut(s) | 291, 564 |
| BstF5I | GGATG | 5 cut(s) | 382, 496, 832, 856, 871 |
| BstHHI | GCGC | 1 cut(s) | 211 |
| BstKTI | GATC | 2 cut(s) | 34, 800 |
| BstMBI | GATC | 2 cut(s) | 31, 797 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 157, 236, 545, 575, 791 |
| BstNI | CCWGG | 1 cut(s) | 449 |
| BstNSI | RCATGY | 1 cut(s) | 386 |
| BstSCI | CCNGG | 1 cut(s) | 447 |
| BstV1I | GCAGC | 1 cut(s) | 113 |
| BstV2I | GAAGAC | 2 cut(s) | 434, 575 |
| BsuI | GTATCC | 2 cut(s) | 128, 191 |
| BtgZI | GCGATG | 1 cut(s) | 65 |
| BtsCI | GGATG | 5 cut(s) | 382, 496, 832, 856, 871 |
| BtsIMutI | CAGTG | 2 cut(s) | 133, 299 |
| Cac8I | GCNNGC | 1 cut(s) | 651 |
| CfoI | GCGC | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 64 |
| CseI | GACGC | 1 cut(s) | 228 |
| Csp6I | GTAC | 4 cut(s) | 140, 302, 380, 687 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 750, 785 |
| CviAII | CATG | 8 cut(s) | 68, 143, 156, 173, 203, 383, 497, 746 |
| CviQI | GTAC | 4 cut(s) | 140, 302, 380, 687 |
| DdeI | CTNAG | 2 cut(s) | 291, 564 |
| DpnI | GATC | 2 cut(s) | 33, 799 |
| DpnII | GATC | 2 cut(s) | 31, 797 |
| Eam1104I | CTCTTC | 2 cut(s) | 87, 250 |
| EarI | CTCTTC | 2 cut(s) | 87, 250 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco57I | CTGAAG | 1 cut(s) | 231 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoRII | CCWGG | 1 cut(s) | 447 |
| EcoT22I | ATGCAT | 1 cut(s) | 555 |
| FaeI | CATG | 8 cut(s) | 71, 146, 159, 176, 206, 386, 500, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 427, 459 |
| FaqI | GGGAC | 1 cut(s) | 886 |
| FatI | CATG | 8 cut(s) | 67, 142, 155, 172, 202, 382, 496, 745 |
| FauNDI | CATATG | 3 cut(s) | 406, 528, 555 |
| Fnu4HI | GCNGC | 1 cut(s) | 102 |
| FokI | GGATG | 5 cut(s) | 389, 503, 819, 863, 878 |
| Fsp4HI | GCNGC | 1 cut(s) | 102 |
| FspBI | CTAG | 6 cut(s) | 258, 267, 486, 579, 656, 795 |
| FspI | TGCGCA | 1 cut(s) | 210 |
| GlaI | GCGC | 1 cut(s) | 210 |
| GluI | GCNGC | 1 cut(s) | 102 |
| HgaI | GACGC | 1 cut(s) | 228 |
| HhaI | GCGC | 1 cut(s) | 211 |
| Hin1II | CATG | 8 cut(s) | 71, 146, 159, 176, 206, 386, 500, 749 |
| Hin6I | GCGC | 1 cut(s) | 209 |
| HinP1I | GCGC | 1 cut(s) | 209 |
| HphI | GGTGA | 1 cut(s) | 779 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 87 |
| Hpy188I | TCNGA | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 4 cut(s) | 195, 424, 755, 836 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 87 |
| HpyAV | CCTTC | 4 cut(s) | 264, 402, 604, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 635 |
| HpyCH4V | TGCA | 4 cut(s) | 225, 417, 553, 649 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 157, 236, 545, 575, 791 |
| HpyF3I | CTNAG | 2 cut(s) | 291, 564 |
| Hsp92II | CATG | 8 cut(s) | 71, 146, 159, 176, 206, 386, 500, 749 |
| HspAI | GCGC | 1 cut(s) | 209 |
| Kzo9I | GATC | 2 cut(s) | 31, 797 |
| LpnPI | CCDG | 6 cut(s) | 133, 434, 461, 554, 833, 849 |
| Lsp1109I | GCAGC | 1 cut(s) | 113 |
| MaeI | CTAG | 6 cut(s) | 258, 267, 486, 579, 656, 795 |
| MaeIII | GTNAC | 2 cut(s) | 385, 629 |
| MalI | GATC | 2 cut(s) | 33, 799 |
| MboI | GATC | 2 cut(s) | 31, 797 |
| MboII | GAAGA | 6 cut(s) | 104, 237, 439, 464, 575, 836 |
| MluCI | AATT | 3 cut(s) | 418, 727, 875 |
| MmeI | TCCRAC | 1 cut(s) | 587 |
| Mph1103I | ATGCAT | 1 cut(s) | 555 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| MspR9I | CCNGG | 1 cut(s) | 449 |
| MvaI | CCWGG | 1 cut(s) | 449 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 157, 236, 545, 575, 791 |
| NdeI | CATATG | 3 cut(s) | 406, 528, 555 |
| NdeII | GATC | 2 cut(s) | 31, 797 |
| NlaIII | CATG | 8 cut(s) | 71, 146, 159, 176, 206, 386, 500, 749 |
| NmuCI | GTSAC | 2 cut(s) | 385, 629 |
| NsbI | TGCGCA | 1 cut(s) | 210 |
| NsiI | ATGCAT | 1 cut(s) | 555 |
| NspI | RCATGY | 1 cut(s) | 386 |
| PciI | ACATGT | 1 cut(s) | 382 |
| PfoI | TCCNGGA | 1 cut(s) | 447 |
| PkrI | GCNGC | 1 cut(s) | 103 |
| PscI | ACATGT | 1 cut(s) | 382 |
| Psp6I | CCWGG | 1 cut(s) | 447 |
| PspGI | CCWGG | 1 cut(s) | 447 |
| PspPI | GGNCC | 1 cut(s) | 64 |
| RsaI | GTAC | 4 cut(s) | 141, 303, 381, 688 |
| RsaNI | GTAC | 4 cut(s) | 140, 302, 380, 687 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 1 cut(s) | 102 |
| Sau3AI | GATC | 2 cut(s) | 31, 797 |
| Sau96I | GGNCC | 1 cut(s) | 64 |
| ScaI | AGTACT | 1 cut(s) | 688 |
| ScrFI | CCNGG | 1 cut(s) | 449 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| Sse9I | AATT | 3 cut(s) | 418, 727, 875 |
| SspI | AATATT | 1 cut(s) | 278 |
| SspMI | CTAG | 6 cut(s) | 258, 267, 486, 579, 656, 795 |
| StyD4I | CCNGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 635 |
| TaqI | TCGA | 1 cut(s) | 601 |
| TasI | AATT | 3 cut(s) | 418, 727, 875 |
| TatI | WGTACW | 3 cut(s) | 139, 379, 686 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 2 cut(s) | 133, 299 |
| TseFI | GTSAC | 2 cut(s) | 385, 629 |
| TseI | GCWGC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 2 cut(s) | 385, 629 |
| TspDTI | ATGAA | 1 cut(s) | 316 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 2 cut(s) | 133, 299 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| XapI | RAATTY | 1 cut(s) | 875 |
| XceI | RCATGY | 1 cut(s) | 386 |
| XspI | CTAG | 6 cut(s) | 258, 267, 486, 579, 656, 795 |
| ZrmI | AGTACT | 1 cut(s) | 688 |
| Zsp2I | ATGCAT | 1 cut(s) | 555 |