Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 75 - 196 | 1.8e-21 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 651 |
| Acc36I | ACCTGC | 1 cut(s) | 337 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AccI | GTMKAC | 1 cut(s) | 376 |
| AcoI | YGGCCR | 1 cut(s) | 312 |
| AcsI | RAATTY | 2 cut(s) | 5, 413 |
| AcuI | CTGAAG | 1 cut(s) | 378 |
| AcyI | GRCGYC | 1 cut(s) | 648 |
| AdeI | CACNNNGTG | 2 cut(s) | 68, 206 |
| AfaI | GTAC | 3 cut(s) | 595, 710, 714 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 658 |
| AflIII | ACRYGT | 1 cut(s) | 541 |
| AgsI | TTSAA | 3 cut(s) | 413, 419, 523 |
| AjnI | CCWGG | 1 cut(s) | 240 |
| AluBI | AGCT | 5 cut(s) | 182, 236, 308, 371, 569 |
| AluI | AGCT | 5 cut(s) | 182, 236, 308, 371, 569 |
| Alw21I | GWGCWC | 1 cut(s) | 73 |
| Alw26I | GTCTC | 2 cut(s) | 91, 342 |
| Alw44I | GTGCAC | 1 cut(s) | 69 |
| AoxI | GGCC | 2 cut(s) | 96, 312 |
| ApaLI | GTGCAC | 1 cut(s) | 69 |
| ApeKI | GCWGC | 2 cut(s) | 182, 305 |
| ApoI | RAATTY | 2 cut(s) | 5, 413 |
| AspLEI | GCGC | 1 cut(s) | 583 |
| AspS9I | GGNCC | 1 cut(s) | 96 |
| AsuHPI | GGTGA | 2 cut(s) | 140, 416 |
| AsuNHI | GCTAGC | 1 cut(s) | 577 |
| BaeGI | GKGCMC | 1 cut(s) | 73 |
| BalI | TGGCCA | 1 cut(s) | 314 |
| BbsI | GAAGAC | 1 cut(s) | 465 |
| Bbv12I | GWGCWC | 1 cut(s) | 73 |
| BbvI | GCAGC | 2 cut(s) | 169, 317 |
| BccI | CCATC | 1 cut(s) | 107 |
| BciT130I | CCWGG | 1 cut(s) | 242 |
| BcoDI | GTCTC | 2 cut(s) | 91, 342 |
| BfaI | CTAG | 5 cut(s) | 18, 204, 453, 578, 591 |
| BfmI | CTRYAG | 1 cut(s) | 547 |
| BfuAI | ACCTGC | 1 cut(s) | 337 |
| BisI | GCNGC | 2 cut(s) | 183, 306 |
| BlsI | GCNGC | 2 cut(s) | 184, 307 |
| Bme1390I | CCNGG | 1 cut(s) | 242 |
| BmgT120I | GGNCC | 1 cut(s) | 96 |
| BmrFI | CCNGG | 1 cut(s) | 242 |
| BmtI | GCTAGC | 1 cut(s) | 581 |
| BpiI | GAAGAC | 1 cut(s) | 465 |
| BsaAI | YACGTR | 1 cut(s) | 712 |
| BsaBI | GATNNNNATC | 1 cut(s) | 522 |
| BsaHI | GRCGYC | 1 cut(s) | 648 |
| BsaJI | CCNNGG | 1 cut(s) | 702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 261, 291 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 658 |
| Bse1I | ACTGG | 1 cut(s) | 600 |
| Bse3DI | GCAATG | 1 cut(s) | 369 |
| Bse8I | GATNNNNATC | 1 cut(s) | 522 |
| BseBI | CCWGG | 1 cut(s) | 242 |
| BseDI | CCNNGG | 1 cut(s) | 702 |
| BseGI | GGATG | 4 cut(s) | 520, 596, 613, 667 |
| BseJI | GATNNNNATC | 1 cut(s) | 522 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 658 |
| BseMI | GCAATG | 1 cut(s) | 369 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseNI | ACTGG | 1 cut(s) | 600 |
| BseSI | GKGCMC | 1 cut(s) | 73 |
| BseXI | GCAGC | 2 cut(s) | 169, 317 |
| BshFI | GGCC | 2 cut(s) | 98, 314 |
| BsiHKAI | GWGCWC | 1 cut(s) | 73 |
| BslFI | GGGAC | 1 cut(s) | 682 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 658 |
| BsmAI | GTCTC | 2 cut(s) | 91, 342 |
| BsmFI | GGGAC | 1 cut(s) | 682 |
| BsnI | GGCC | 2 cut(s) | 98, 314 |
| Bsp1286I | GDGCHC | 1 cut(s) | 73 |
| BspANI | GGCC | 2 cut(s) | 98, 314 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspMI | ACCTGC | 1 cut(s) | 337 |
| BspOI | GCTAGC | 1 cut(s) | 581 |
| BsrDI | GCAATG | 1 cut(s) | 369 |
| BsrI | ACTGG | 1 cut(s) | 600 |
| BssECI | CCNNGG | 1 cut(s) | 702 |
| BssNI | GRCGYC | 1 cut(s) | 648 |
| Bst2UI | CCWGG | 1 cut(s) | 242 |
| Bst4CI | ACNGT | 2 cut(s) | 428, 436 |
| BstACI | GRCGYC | 1 cut(s) | 648 |
| BstBAI | YACGTR | 1 cut(s) | 712 |
| BstC8I | GCNNGC | 3 cut(s) | 369, 441, 579 |
| BstDEI | CTNAG | 2 cut(s) | 474, 536 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 656 |
| BstF5I | GGATG | 4 cut(s) | 520, 596, 613, 667 |
| BstHHI | GCGC | 1 cut(s) | 583 |
| BstMAI | GTCTC | 2 cut(s) | 91, 342 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 242, 311, 331, 368, 449, 587 |
| BstNI | CCWGG | 1 cut(s) | 242 |
| BstNSI | RCATGY | 1 cut(s) | 545 |
| BstSCI | CCNGG | 1 cut(s) | 240 |
| BstSFI | CTRYAG | 1 cut(s) | 547 |
| BstSLI | GKGCMC | 1 cut(s) | 73 |
| BstSNI | TACGTA | 1 cut(s) | 712 |
| BstV1I | GCAGC | 2 cut(s) | 169, 317 |
| BstV2I | GAAGAC | 1 cut(s) | 465 |
| BsuRI | GGCC | 2 cut(s) | 98, 314 |
| BtsCI | GGATG | 4 cut(s) | 520, 596, 613, 667 |
| BtsI | GCAGTG | 1 cut(s) | 404 |
| BtsIMutI | CAGTG | 3 cut(s) | 404, 433, 462 |
| BveI | ACCTGC | 1 cut(s) | 337 |
| Cac8I | GCNNGC | 3 cut(s) | 369, 441, 579 |
| CfoI | GCGC | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 1 cut(s) | 96 |
| Csp6I | GTAC | 3 cut(s) | 594, 709, 713 |
| CviAII | CATG | 3 cut(s) | 329, 494, 542 |
| CviQI | GTAC | 3 cut(s) | 594, 709, 713 |
| DdeI | CTNAG | 2 cut(s) | 474, 536 |
| DraIII | CACNNNGTG | 2 cut(s) | 68, 206 |
| EaeI | YGGCCR | 1 cut(s) | 312 |
| Eco105I | TACGTA | 1 cut(s) | 712 |
| Eco57I | CTGAAG | 1 cut(s) | 378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 656 |
| EcoRII | CCWGG | 1 cut(s) | 240 |
| FaeI | CATG | 3 cut(s) | 332, 497, 545 |
| FaqI | GGGAC | 1 cut(s) | 682 |
| FatI | CATG | 3 cut(s) | 328, 493, 541 |
| FblI | GTMKAC | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 2 cut(s) | 183, 306 |
| FokI | GGATG | 4 cut(s) | 527, 583, 620, 674 |
| Fsp4HI | GCNGC | 2 cut(s) | 183, 306 |
| FspBI | CTAG | 5 cut(s) | 18, 204, 453, 578, 591 |
| GlaI | GCGC | 1 cut(s) | 582 |
| GluI | GCNGC | 2 cut(s) | 183, 306 |
| HaeIII | GGCC | 2 cut(s) | 98, 314 |
| HhaI | GCGC | 1 cut(s) | 583 |
| Hin1I | GRCGYC | 1 cut(s) | 648 |
| Hin1II | CATG | 3 cut(s) | 332, 497, 545 |
| Hin6I | GCGC | 1 cut(s) | 581 |
| HinP1I | GCGC | 1 cut(s) | 581 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HinfI | GANTC | 1 cut(s) | 59 |
| HphI | GGTGA | 2 cut(s) | 140, 416 |
| Hpy166II | GTNNAC | 6 cut(s) | 71, 148, 200, 229, 377, 709 |
| Hpy188I | TCNGA | 3 cut(s) | 133, 293, 475 |
| Hpy188III | TCNNGA | 3 cut(s) | 47, 632, 644 |
| Hpy8I | GTNNAC | 6 cut(s) | 71, 148, 200, 229, 377, 709 |
| HpyAV | CCTTC | 3 cut(s) | 44, 250, 730 |
| HpyCH4III | ACNGT | 2 cut(s) | 428, 436 |
| HpyCH4IV | ACGT | 3 cut(s) | 67, 648, 711 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 346, 493 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 242, 311, 331, 368, 449, 587 |
| HpyF3I | CTNAG | 2 cut(s) | 474, 536 |
| HpySE526I | ACGT | 3 cut(s) | 67, 648, 711 |
| Hsp92I | GRCGYC | 1 cut(s) | 648 |
| Hsp92II | CATG | 3 cut(s) | 332, 497, 545 |
| HspAI | GCGC | 1 cut(s) | 581 |
| LmnI | GCTCC | 1 cut(s) | 233 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 317 |
| MaeI | CTAG | 5 cut(s) | 18, 204, 453, 578, 591 |
| MaeII | ACGT | 3 cut(s) | 67, 648, 711 |
| MaeIII | GTNAC | 1 cut(s) | 422 |
| MboII | GAAGA | 2 cut(s) | 470, 524 |
| MhlI | GDGCHC | 1 cut(s) | 73 |
| MlsI | TGGCCA | 1 cut(s) | 314 |
| MluCI | AATT | 4 cut(s) | 5, 118, 168, 413 |
| MluNI | TGGCCA | 1 cut(s) | 314 |
| MlyI | GAGTC | 1 cut(s) | 53 |
| MnlI | CCTC | 8 cut(s) | 204, 254, 346, 469, 616, 652, 674, 712 |
| Mox20I | TGGCCA | 1 cut(s) | 314 |
| MscI | TGGCCA | 1 cut(s) | 314 |
| MseI | TTAA | 2 cut(s) | 171, 674 |
| Msp20I | TGGCCA | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 1 cut(s) | 242 |
| MvaI | CCWGG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 242, 311, 331, 368, 449, 587 |
| NheI | GCTAGC | 1 cut(s) | 577 |
| NlaIII | CATG | 3 cut(s) | 332, 497, 545 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NspI | RCATGY | 1 cut(s) | 545 |
| PciI | ACATGT | 1 cut(s) | 541 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PkrI | GCNGC | 2 cut(s) | 184, 307 |
| PleI | GAGTC | 1 cut(s) | 53 |
| PpsI | GAGTC | 1 cut(s) | 53 |
| Ppu21I | YACGTR | 1 cut(s) | 712 |
| PscI | ACATGT | 1 cut(s) | 541 |
| Psp6I | CCWGG | 1 cut(s) | 240 |
| PspGI | CCWGG | 1 cut(s) | 240 |
| PspPI | GGNCC | 1 cut(s) | 96 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| RsaI | GTAC | 3 cut(s) | 595, 710, 714 |
| RsaNI | GTAC | 3 cut(s) | 594, 709, 713 |
| SaqAI | TTAA | 2 cut(s) | 171, 674 |
| SatI | GCNGC | 2 cut(s) | 183, 306 |
| Sau96I | GGNCC | 1 cut(s) | 96 |
| SchI | GAGTC | 1 cut(s) | 53 |
| ScrFI | CCNGG | 1 cut(s) | 242 |
| SduI | GDGCHC | 1 cut(s) | 73 |
| SfcI | CTRYAG | 1 cut(s) | 547 |
| SnaBI | TACGTA | 1 cut(s) | 712 |
| Sse9I | AATT | 4 cut(s) | 5, 118, 168, 413 |
| SspMI | CTAG | 5 cut(s) | 18, 204, 453, 578, 591 |
| StyD4I | CCNGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 2 cut(s) | 428, 436 |
| TaiI | ACGT | 3 cut(s) | 70, 651, 714 |
| TaqI | TCGA | 1 cut(s) | 679 |
| TasI | AATT | 4 cut(s) | 5, 118, 168, 413 |
| TatI | WGTACW | 1 cut(s) | 593 |
| Tru1I | TTAA | 2 cut(s) | 171, 674 |
| Tru9I | TTAA | 2 cut(s) | 171, 674 |
| TscAI | CASTG | 3 cut(s) | 404, 433, 469 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 2 cut(s) | 182, 305 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 1 cut(s) | 380 |
| TspGWI | ACGGA | 1 cut(s) | 246 |
| TspRI | CASTG | 3 cut(s) | 404, 433, 469 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VneI | GTGCAC | 1 cut(s) | 69 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 656 |
| XapI | RAATTY | 2 cut(s) | 5, 413 |
| XceI | RCATGY | 1 cut(s) | 545 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 186, 248 |
| XmiI | GTMKAC | 1 cut(s) | 376 |
| XspI | CTAG | 5 cut(s) | 18, 204, 453, 578, 591 |
| ZraI | GACGTC | 1 cut(s) | 649 |