Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 847 |
| AciI | CCGC | 8 cut(s) | 16, 190, 300, 303, 311, 476, 587, 593 |
| AclWI | GGATC | 3 cut(s) | 350, 901, 914 |
| AcoI | YGGCCR | 3 cut(s) | 217, 580, 709 |
| AcuI | CTGAAG | 2 cut(s) | 182, 482 |
| AfaI | GTAC | 2 cut(s) | 158, 636 |
| AgsI | TTSAA | 4 cut(s) | 229, 574, 703, 875 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 866 |
| AluBI | AGCT | 5 cut(s) | 211, 287, 317, 460, 613 |
| AluI | AGCT | 5 cut(s) | 211, 287, 317, 460, 613 |
| Alw21I | GWGCWC | 2 cut(s) | 213, 319 |
| Alw26I | GTCTC | 3 cut(s) | 161, 281, 415 |
| AlwI | GGATC | 3 cut(s) | 350, 901, 914 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 658 |
| AoxI | GGCC | 6 cut(s) | 85, 217, 255, 557, 580, 709 |
| AspLEI | GCGC | 2 cut(s) | 187, 403 |
| AspS9I | GGNCC | 2 cut(s) | 86, 790 |
| AsuC2I | CCSGG | 2 cut(s) | 127, 783 |
| AsuHPI | GGTGA | 1 cut(s) | 655 |
| AvaII | GGWCC | 1 cut(s) | 790 |
| BalI | TGGCCA | 2 cut(s) | 582, 711 |
| BamHI | GGATCC | 1 cut(s) | 906 |
| BanI | GGYRCC | 1 cut(s) | 847 |
| BanII | GRGCYC | 3 cut(s) | 213, 319, 493 |
| Bbv12I | GWGCWC | 2 cut(s) | 213, 319 |
| BccI | CCATC | 2 cut(s) | 378, 442 |
| BceAI | ACGGC | 1 cut(s) | 189 |
| BcnI | CCSGG | 2 cut(s) | 127, 783 |
| BcoDI | GTCTC | 3 cut(s) | 161, 281, 415 |
| BfaI | CTAG | 2 cut(s) | 320, 515 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 639 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 783 |
| Bme18I | GGWCC | 1 cut(s) | 790 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 866 |
| BmgT120I | GGNCC | 2 cut(s) | 86, 790 |
| BmiI | GGNNCC | 5 cut(s) | 630, 648, 792, 849, 908 |
| BmrFI | CCNGG | 2 cut(s) | 127, 783 |
| BmsI | GCATC | 4 cut(s) | 34, 283, 501, 666 |
| BoxI | GACNNNNGTC | 1 cut(s) | 659 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 808, 840 |
| Bpu10I | CCTNAGC | 1 cut(s) | 453 |
| BpuMI | CCSGG | 2 cut(s) | 127, 783 |
| BsaI | GGTCTC | 2 cut(s) | 281, 415 |
| BsaWI | WCCGGW | 1 cut(s) | 850 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 2 cut(s) | 632, 749 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseGI | GGATG | 2 cut(s) | 33, 169 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 5 cut(s) | 344, 467, 665, 753, 782 |
| BseNI | ACTGG | 2 cut(s) | 632, 749 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BshFI | GGCC | 6 cut(s) | 87, 219, 257, 559, 582, 711 |
| BshNI | GGYRCC | 1 cut(s) | 847 |
| BsiHKAI | GWGCWC | 2 cut(s) | 213, 319 |
| BsiSI | CCGG | 4 cut(s) | 126, 220, 782, 851 |
| BslFI | GGGAC | 1 cut(s) | 555 |
| BsmAI | GTCTC | 3 cut(s) | 161, 281, 415 |
| BsmBI | CGTCTC | 1 cut(s) | 161 |
| BsmFI | GGGAC | 1 cut(s) | 555 |
| BsnI | GGCC | 6 cut(s) | 87, 219, 257, 559, 582, 711 |
| Bso31I | GGTCTC | 2 cut(s) | 281, 415 |
| Bsp1286I | GDGCHC | 3 cut(s) | 213, 319, 493 |
| Bsp143I | GATC | 4 cut(s) | 355, 639, 898, 906 |
| BspACI | CCGC | 8 cut(s) | 16, 190, 300, 303, 311, 476, 587, 593 |
| BspANI | GGCC | 6 cut(s) | 87, 219, 257, 559, 582, 711 |
| BspCNI | CTCAG | 5 cut(s) | 343, 466, 664, 754, 781 |
| BspLI | GGNNCC | 5 cut(s) | 630, 648, 792, 849, 908 |
| BspPI | GGATC | 3 cut(s) | 350, 901, 914 |
| BspT107I | GGYRCC | 1 cut(s) | 847 |
| BspTNI | GGTCTC | 2 cut(s) | 281, 415 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 2 cut(s) | 632, 749 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssMI | GATC | 4 cut(s) | 355, 639, 898, 906 |
| Bst4CI | ACNGT | 2 cut(s) | 367, 835 |
| BstC8I | GCNNGC | 5 cut(s) | 221, 342, 468, 584, 713 |
| BstDEI | CTNAG | 5 cut(s) | 330, 453, 651, 762, 768 |
| BstEII | GGTNACC | 1 cut(s) | 661 |
| BstF5I | GGATG | 2 cut(s) | 33, 169 |
| BstHHI | GCGC | 2 cut(s) | 187, 403 |
| BstKTI | GATC | 4 cut(s) | 358, 642, 901, 909 |
| BstMAI | GTCTC | 3 cut(s) | 161, 281, 415 |
| BstMBI | GATC | 4 cut(s) | 355, 639, 898, 906 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 659 |
| BstPI | GGTNACC | 1 cut(s) | 661 |
| BstSCI | CCNGG | 2 cut(s) | 125, 781 |
| BstX2I | RGATCY | 2 cut(s) | 639, 906 |
| BstYI | RGATCY | 2 cut(s) | 639, 906 |
| BsuRI | GGCC | 6 cut(s) | 87, 219, 257, 559, 582, 711 |
| BtsCI | GGATG | 2 cut(s) | 33, 169 |
| BtsI | GCAGTG | 1 cut(s) | 925 |
| BtsIMutI | CAGTG | 2 cut(s) | 756, 925 |
| Cac8I | GCNNGC | 5 cut(s) | 221, 342, 468, 584, 713 |
| CaiI | CAGNNNCTG | 1 cut(s) | 658 |
| CfoI | GCGC | 2 cut(s) | 187, 403 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 2 cut(s) | 86, 790 |
| Csp6I | GTAC | 2 cut(s) | 157, 635 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 519, 554 |
| CviQI | GTAC | 2 cut(s) | 157, 635 |
| DdeI | CTNAG | 5 cut(s) | 330, 453, 651, 762, 768 |
| DpnI | GATC | 4 cut(s) | 357, 641, 900, 908 |
| DpnII | GATC | 4 cut(s) | 355, 639, 898, 906 |
| DriI | GACNNNNNGTC | 1 cut(s) | 866 |
| EaeI | YGGCCR | 3 cut(s) | 217, 580, 709 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 866 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 317 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 319, 493 |
| Eco31I | GGTCTC | 2 cut(s) | 281, 415 |
| Eco47I | GGWCC | 1 cut(s) | 790 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 317 |
| Eco57I | CTGAAG | 2 cut(s) | 182, 482 |
| Eco91I | GGTNACC | 1 cut(s) | 661 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 317 |
| EcoO65I | GGTNACC | 1 cut(s) | 661 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 319, 493 |
| Esp3I | CGTCTC | 1 cut(s) | 161 |
| FaiI | YATR | 3 cut(s) | 42, 554, 891 |
| FaqI | GGGAC | 1 cut(s) | 555 |
| FauI | CCCGC | 1 cut(s) | 304 |
| FokI | GGATG | 2 cut(s) | 20, 176 |
| FriOI | GRGCYC | 3 cut(s) | 213, 319, 493 |
| FspBI | CTAG | 2 cut(s) | 320, 515 |
| GlaI | GCGC | 2 cut(s) | 186, 402 |
| HaeIII | GGCC | 6 cut(s) | 87, 219, 257, 559, 582, 711 |
| HapII | CCGG | 4 cut(s) | 126, 220, 782, 851 |
| HhaI | GCGC | 2 cut(s) | 187, 403 |
| Hin6I | GCGC | 2 cut(s) | 185, 401 |
| HinP1I | GCGC | 2 cut(s) | 185, 401 |
| HinfI | GANTC | 4 cut(s) | 193, 391, 655, 772 |
| HpaII | CCGG | 4 cut(s) | 126, 220, 782, 851 |
| HphI | GGTGA | 1 cut(s) | 655 |
| Hpy166II | GTNNAC | 1 cut(s) | 790 |
| Hpy188I | TCNGA | 9 cut(s) | 104, 415, 628, 646, 654, 745, 763, 771, 903 |
| Hpy188III | TCNNGA | 3 cut(s) | 200, 455, 827 |
| Hpy8I | GTNNAC | 1 cut(s) | 790 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 4 cut(s) | 223, 247, 415, 580 |
| HpyCH4III | ACNGT | 2 cut(s) | 367, 835 |
| HpyCH4V | TGCA | 6 cut(s) | 296, 470, 679, 754, 805, 915 |
| HpyF3I | CTNAG | 5 cut(s) | 330, 453, 651, 762, 768 |
| HspAI | GCGC | 2 cut(s) | 185, 401 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Kzo9I | GATC | 4 cut(s) | 355, 639, 898, 906 |
| LmnI | GCTCC | 3 cut(s) | 314, 457, 646 |
| LweI | GCATC | 4 cut(s) | 34, 283, 501, 666 |
| MaeI | CTAG | 2 cut(s) | 320, 515 |
| MaeIII | GTNAC | 4 cut(s) | 94, 109, 523, 661 |
| MalI | GATC | 4 cut(s) | 357, 641, 900, 908 |
| MboI | GATC | 4 cut(s) | 355, 639, 898, 906 |
| MboII | GAAGA | 2 cut(s) | 188, 767 |
| MflI | RGATCY | 2 cut(s) | 639, 906 |
| MhlI | GDGCHC | 3 cut(s) | 213, 319, 493 |
| MlsI | TGGCCA | 2 cut(s) | 582, 711 |
| MluCI | AATT | 2 cut(s) | 235, 426 |
| MluNI | TGGCCA | 2 cut(s) | 582, 711 |
| MlyI | GAGTC | 1 cut(s) | 649 |
| MmeI | TCCRAC | 1 cut(s) | 904 |
| Mox20I | TGGCCA | 2 cut(s) | 582, 711 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MscI | TGGCCA | 2 cut(s) | 582, 711 |
| MseI | TTAA | 3 cut(s) | 234, 482, 549 |
| Msp20I | TGGCCA | 2 cut(s) | 582, 711 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspI | CCGG | 4 cut(s) | 126, 220, 782, 851 |
| MspR9I | CCNGG | 2 cut(s) | 127, 783 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 2 cut(s) | 127, 783 |
| NdeII | GATC | 4 cut(s) | 355, 639, 898, 906 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIV | GGNNCC | 5 cut(s) | 630, 648, 792, 849, 908 |
| NmuCI | GTSAC | 3 cut(s) | 94, 523, 661 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 839 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 3 cut(s) | 193, 391, 772 |
| PleI | GAGTC | 1 cut(s) | 649 |
| PpsI | GAGTC | 1 cut(s) | 649 |
| PshAI | GACNNNNGTC | 1 cut(s) | 659 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 319 |
| PspEI | GGTNACC | 1 cut(s) | 661 |
| PspN4I | GGNNCC | 5 cut(s) | 630, 648, 792, 849, 908 |
| PspPI | GGNCC | 2 cut(s) | 86, 790 |
| PstNI | CAGNNNCTG | 1 cut(s) | 658 |
| PsuI | RGATCY | 2 cut(s) | 639, 906 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RsaI | GTAC | 2 cut(s) | 158, 636 |
| RsaNI | GTAC | 2 cut(s) | 157, 635 |
| SacI | GAGCTC | 2 cut(s) | 213, 319 |
| SaqAI | TTAA | 3 cut(s) | 234, 482, 549 |
| Sau3AI | GATC | 4 cut(s) | 355, 639, 898, 906 |
| Sau96I | GGNCC | 2 cut(s) | 86, 790 |
| SchI | GAGTC | 1 cut(s) | 649 |
| ScrFI | CCNGG | 2 cut(s) | 127, 783 |
| SduI | GDGCHC | 3 cut(s) | 213, 319, 493 |
| SfaNI | GCATC | 4 cut(s) | 34, 283, 501, 666 |
| SinI | GGWCC | 1 cut(s) | 790 |
| Sse9I | AATT | 2 cut(s) | 235, 426 |
| SsiI | CCGC | 8 cut(s) | 16, 190, 300, 303, 311, 476, 587, 593 |
| SspI | AATATT | 1 cut(s) | 706 |
| SspMI | CTAG | 2 cut(s) | 320, 515 |
| SstI | GAGCTC | 2 cut(s) | 213, 319 |
| StyD4I | CCNGG | 2 cut(s) | 125, 781 |
| TaaI | ACNGT | 2 cut(s) | 367, 835 |
| TaqI | TCGA | 1 cut(s) | 386 |
| TasI | AATT | 2 cut(s) | 235, 426 |
| TatI | WGTACW | 2 cut(s) | 156, 634 |
| TauI | GCSGC | 6 cut(s) | 18, 302, 305, 478, 589, 595 |
| TfiI | GAWTC | 3 cut(s) | 193, 391, 772 |
| Tru1I | TTAA | 3 cut(s) | 234, 482, 549 |
| Tru9I | TTAA | 3 cut(s) | 234, 482, 549 |
| TscAI | CASTG | 2 cut(s) | 756, 925 |
| TseFI | GTSAC | 3 cut(s) | 94, 523, 661 |
| Tsp45I | GTSAC | 3 cut(s) | 94, 523, 661 |
| TspDTI | ATGAA | 1 cut(s) | 434 |
| TspRI | CASTG | 2 cut(s) | 756, 925 |
| VpaK11BI | GGWCC | 1 cut(s) | 790 |
| XspI | CTAG | 2 cut(s) | 320, 515 |