Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF1191 | PF06697 | 31 - 205 | 3.2e-58 | Protein of unknown function (DUF1191) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 284 |
| AclWI | GGATC | 3 cut(s) | 83, 211, 224 |
| AcsI | RAATTY | 4 cut(s) | 250, 325, 521, 741 |
| AcuI | CTGAAG | 2 cut(s) | 327, 867 |
| AcyI | GRCGYC | 1 cut(s) | 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 587 |
| AfaI | GTAC | 3 cut(s) | 23, 106, 785 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 152, 389 |
| AflII | CTTAAG | 1 cut(s) | 100 |
| AgsI | TTSAA | 6 cut(s) | 13, 71, 417, 521, 850, 917 |
| AjnI | CCWGG | 1 cut(s) | 396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 513, 545 |
| AluBI | AGCT | 5 cut(s) | 18, 203, 439, 540, 815 |
| AluI | AGCT | 5 cut(s) | 18, 203, 439, 540, 815 |
| AlwI | GGATC | 3 cut(s) | 83, 211, 224 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| AoxI | GGCC | 1 cut(s) | 843 |
| ApoI | RAATTY | 4 cut(s) | 250, 325, 521, 741 |
| AsuHPI | GGTGA | 2 cut(s) | 470, 599 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| BamHI | GGATCC | 1 cut(s) | 216 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 187, 219, 865, 897 |
| BbsI | GAAGAC | 1 cut(s) | 333 |
| BccI | CCATC | 2 cut(s) | 622, 745 |
| BciT130I | CCWGG | 1 cut(s) | 398 |
| BfaI | CTAG | 3 cut(s) | 213, 761, 897 |
| BfmI | CTRYAG | 1 cut(s) | 312 |
| BfrI | CTTAAG | 1 cut(s) | 100 |
| BmcAI | AGTACT | 1 cut(s) | 106 |
| Bme1390I | CCNGG | 1 cut(s) | 398 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmiI | GGNNCC | 1 cut(s) | 218 |
| BmrFI | CCNGG | 1 cut(s) | 398 |
| BmsI | GCATC | 2 cut(s) | 165, 896 |
| BpiI | GAAGAC | 1 cut(s) | 333 |
| BsaHI | GRCGYC | 1 cut(s) | 632 |
| BsaJI | CCNNGG | 1 cut(s) | 275 |
| BsaWI | WCCGGW | 1 cut(s) | 191 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 152, 389 |
| Bse1I | ACTGG | 2 cut(s) | 132, 475 |
| BseBI | CCWGG | 1 cut(s) | 398 |
| BseDI | CCNNGG | 1 cut(s) | 275 |
| BseGI | GGATG | 2 cut(s) | 756, 844 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 152, 389 |
| BseMII | CTCAG | 1 cut(s) | 552 |
| BseNI | ACTGG | 2 cut(s) | 132, 475 |
| BseRI | GAGGAG | 3 cut(s) | 258, 811, 814 |
| BshFI | GGCC | 1 cut(s) | 845 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BsiSI | CCGG | 2 cut(s) | 179, 192 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 152, 389 |
| BsnI | GGCC | 1 cut(s) | 845 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp1407I | TGTACA | 1 cut(s) | 783 |
| Bsp143I | GATC | 3 cut(s) | 88, 216, 546 |
| BspANI | GGCC | 1 cut(s) | 845 |
| BspCNI | CTCAG | 1 cut(s) | 553 |
| BspLI | GGNNCC | 1 cut(s) | 218 |
| BspPI | GGATC | 3 cut(s) | 83, 211, 224 |
| BspTI | CTTAAG | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 783 |
| BsrI | ACTGG | 2 cut(s) | 132, 475 |
| BssECI | CCNNGG | 1 cut(s) | 275 |
| BssMI | GATC | 3 cut(s) | 88, 216, 546 |
| BssNI | GRCGYC | 1 cut(s) | 632 |
| BssT1I | CCWWGG | 1 cut(s) | 275 |
| Bst2UI | CCWGG | 1 cut(s) | 398 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstACI | GRCGYC | 1 cut(s) | 632 |
| BstAFI | CTTAAG | 1 cut(s) | 100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 929 |
| BstAUI | TGTACA | 1 cut(s) | 783 |
| BstDEI | CTNAG | 2 cut(s) | 221, 561 |
| BstEII | GGTNACC | 1 cut(s) | 458 |
| BstF5I | GGATG | 2 cut(s) | 756, 844 |
| BstKTI | GATC | 3 cut(s) | 91, 219, 549 |
| BstMBI | GATC | 3 cut(s) | 88, 216, 546 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 929 |
| BstNI | CCWGG | 1 cut(s) | 398 |
| BstPI | GGTNACC | 1 cut(s) | 458 |
| BstSCI | CCNGG | 1 cut(s) | 396 |
| BstSFI | CTRYAG | 1 cut(s) | 312 |
| BstV2I | GAAGAC | 1 cut(s) | 333 |
| BstX2I | RGATCY | 1 cut(s) | 216 |
| BstYI | RGATCY | 1 cut(s) | 216 |
| BsuRI | GGCC | 1 cut(s) | 845 |
| BtsCI | GGATG | 2 cut(s) | 756, 844 |
| BtsIMutI | CAGTG | 1 cut(s) | 139 |
| CseI | GACGC | 1 cut(s) | 640 |
| Csp6I | GTAC | 3 cut(s) | 22, 105, 784 |
| CviAII | CATG | 4 cut(s) | 491, 556, 584, 781 |
| CviQI | GTAC | 3 cut(s) | 22, 105, 784 |
| DdeI | CTNAG | 2 cut(s) | 221, 561 |
| DpnI | GATC | 3 cut(s) | 90, 218, 548 |
| DpnII | GATC | 3 cut(s) | 88, 216, 546 |
| DraIII | CACNNNGTG | 1 cut(s) | 587 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco130I | CCWWGG | 1 cut(s) | 275 |
| Eco57I | CTGAAG | 2 cut(s) | 327, 867 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| Eco91I | GGTNACC | 1 cut(s) | 458 |
| EcoO65I | GGTNACC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 1 cut(s) | 275 |
| ErhI | CCWWGG | 1 cut(s) | 275 |
| FaeI | CATG | 4 cut(s) | 494, 559, 587, 784 |
| FatI | CATG | 4 cut(s) | 490, 555, 583, 780 |
| FauNDI | CATATG | 2 cut(s) | 79, 295 |
| FokI | GGATG | 2 cut(s) | 763, 851 |
| FspBI | CTAG | 3 cut(s) | 213, 761, 897 |
| HaeIII | GGCC | 1 cut(s) | 845 |
| HapII | CCGG | 2 cut(s) | 179, 192 |
| HgaI | GACGC | 1 cut(s) | 640 |
| Hin1I | GRCGYC | 1 cut(s) | 632 |
| Hin1II | CATG | 4 cut(s) | 494, 559, 587, 784 |
| HincII | GTYRAC | 1 cut(s) | 309 |
| HindII | GTYRAC | 1 cut(s) | 309 |
| HindIII | AAGCTT | 1 cut(s) | 201 |
| HinfI | GANTC | 2 cut(s) | 95, 407 |
| HpaI | GTTAAC | 1 cut(s) | 309 |
| HpaII | CCGG | 2 cut(s) | 179, 192 |
| HphI | GGTGA | 2 cut(s) | 470, 599 |
| Hpy166II | GTNNAC | 2 cut(s) | 309, 349 |
| Hpy188I | TCNGA | 1 cut(s) | 832 |
| Hpy188III | TCNNGA | 1 cut(s) | 92 |
| Hpy8I | GTNNAC | 2 cut(s) | 309, 349 |
| Hpy99I | CGWCG | 1 cut(s) | 634 |
| HpyAV | CCTTC | 3 cut(s) | 584, 856, 891 |
| HpyCH4V | TGCA | 5 cut(s) | 125, 227, 422, 470, 496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 929 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 561 |
| Hsp92I | GRCGYC | 1 cut(s) | 632 |
| Hsp92II | CATG | 4 cut(s) | 494, 559, 587, 784 |
| KspAI | GTTAAC | 1 cut(s) | 309 |
| Kzo9I | GATC | 3 cut(s) | 88, 216, 546 |
| LmnI | GCTCC | 3 cut(s) | 385, 537, 937 |
| LweI | GCATC | 2 cut(s) | 165, 896 |
| MaeI | CTAG | 3 cut(s) | 213, 761, 897 |
| MaeIII | GTNAC | 1 cut(s) | 458 |
| MalI | GATC | 3 cut(s) | 90, 218, 548 |
| MboI | GATC | 3 cut(s) | 88, 216, 546 |
| MboII | GAAGA | 3 cut(s) | 59, 167, 333 |
| MfeI | CAATTG | 2 cut(s) | 334, 465 |
| MflI | RGATCY | 1 cut(s) | 216 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MnlI | CCTC | 8 cut(s) | 85, 156, 236, 492, 556, 789, 792, 795 |
| MseI | TTAA | 2 cut(s) | 101, 308 |
| MslI | CAYNNNNRTG | 2 cut(s) | 120, 489 |
| MspCI | CTTAAG | 1 cut(s) | 100 |
| MspI | CCGG | 2 cut(s) | 179, 192 |
| MspR9I | CCNGG | 1 cut(s) | 398 |
| MunI | CAATTG | 2 cut(s) | 334, 465 |
| MvaI | CCWGG | 1 cut(s) | 398 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 929 |
| NdeI | CATATG | 2 cut(s) | 79, 295 |
| NdeII | GATC | 3 cut(s) | 88, 216, 546 |
| NlaIII | CATG | 4 cut(s) | 494, 559, 587, 784 |
| NlaIV | GGNNCC | 1 cut(s) | 218 |
| NmuCI | GTSAC | 1 cut(s) | 458 |
| PfeI | GAWTC | 1 cut(s) | 407 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| PsiI | TTATAA | 1 cut(s) | 284 |
| Psp6I | CCWGG | 1 cut(s) | 396 |
| PspEI | GGTNACC | 1 cut(s) | 458 |
| PspGI | CCWGG | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 1 cut(s) | 218 |
| PsuI | RGATCY | 1 cut(s) | 216 |
| RsaI | GTAC | 3 cut(s) | 23, 106, 785 |
| RsaNI | GTAC | 3 cut(s) | 22, 105, 784 |
| RseI | CAYNNNNRTG | 2 cut(s) | 120, 489 |
| SaqAI | TTAA | 2 cut(s) | 101, 308 |
| Sau3AI | GATC | 3 cut(s) | 88, 216, 546 |
| ScaI | AGTACT | 1 cut(s) | 106 |
| SchI | GAGTC | 1 cut(s) | 104 |
| ScrFI | CCNGG | 1 cut(s) | 398 |
| SetI | ASST | 7 cut(s) | 20, 205, 308, 441, 542, 817, 915 |
| SfaNI | GCATC | 2 cut(s) | 165, 896 |
| SfcI | CTRYAG | 1 cut(s) | 312 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 120, 489 |
| SmlI | CTYRAG | 1 cut(s) | 100 |
| SmoI | CTYRAG | 1 cut(s) | 100 |
| SspMI | CTAG | 3 cut(s) | 213, 761, 897 |
| StyD4I | CCNGG | 1 cut(s) | 396 |
| StyI | CCWWGG | 1 cut(s) | 275 |
| TatI | WGTACW | 2 cut(s) | 104, 783 |
| TfiI | GAWTC | 1 cut(s) | 407 |
| Tru1I | TTAA | 2 cut(s) | 101, 308 |
| Tru9I | TTAA | 2 cut(s) | 101, 308 |
| TscAI | CASTG | 1 cut(s) | 139 |
| TseFI | GTSAC | 1 cut(s) | 458 |
| Tsp45I | GTSAC | 1 cut(s) | 458 |
| TspDTI | ATGAA | 3 cut(s) | 104, 195, 479 |
| TspRI | CASTG | 1 cut(s) | 139 |
| Vha464I | CTTAAG | 1 cut(s) | 100 |
| XapI | RAATTY | 4 cut(s) | 250, 325, 521, 741 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 370 |
| XspI | CTAG | 3 cut(s) | 213, 761, 897 |
| ZrmI | AGTACT | 1 cut(s) | 106 |