Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 772 |
| AccII | CGCG | 2 cut(s) | 592, 803 |
| AciI | CCGC | 2 cut(s) | 801, 803 |
| AcsI | RAATTY | 2 cut(s) | 256, 381 |
| AcuI | CTGAAG | 3 cut(s) | 57, 603, 834 |
| AfaI | GTAC | 1 cut(s) | 433 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 759 |
| AgsI | TTSAA | 3 cut(s) | 56, 179, 371 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 486, 518 |
| AluBI | AGCT | 5 cut(s) | 71, 156, 292, 341, 545 |
| AluI | AGCT | 5 cut(s) | 71, 156, 292, 341, 545 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 134 |
| AoxI | GGCC | 1 cut(s) | 798 |
| ApoI | RAATTY | 2 cut(s) | 256, 381 |
| AseI | ATTAAT | 1 cut(s) | 87 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 70 |
| AspLEI | GCGC | 1 cut(s) | 592 |
| AspS9I | GGNCC | 2 cut(s) | 624, 750 |
| AsuHPI | GGTGA | 1 cut(s) | 645 |
| AsuNHI | GCTAGC | 1 cut(s) | 541 |
| AvaII | GGWCC | 2 cut(s) | 624, 750 |
| BbvCI | CCTCAGC | 1 cut(s) | 639 |
| BccI | CCATC | 3 cut(s) | 664, 722, 773 |
| BfaI | CTAG | 1 cut(s) | 542 |
| BisI | GCNGC | 2 cut(s) | 801, 804 |
| BlsI | GCNGC | 2 cut(s) | 802, 805 |
| Bme18I | GGWCC | 2 cut(s) | 624, 750 |
| BmgT120I | GGNCC | 2 cut(s) | 624, 750 |
| BmiI | GGNNCC | 1 cut(s) | 625 |
| BmtI | GCTAGC | 1 cut(s) | 545 |
| Bpu10I | CCTNAGC | 1 cut(s) | 639 |
| BpuEI | CTTGAG | 1 cut(s) | 321 |
| BsaBI | GATNNNNATC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 801 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 392, 422 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 759 |
| Bse1I | ACTGG | 2 cut(s) | 284, 719 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| Bse8I | GATNNNNATC | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 801 |
| BseGI | GGATG | 2 cut(s) | 52, 733 |
| BseJI | GATNNNNATC | 1 cut(s) | 33 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 759 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 1 cut(s) | 630 |
| BseNI | ACTGG | 2 cut(s) | 284, 719 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BsgI | GTGCAG | 1 cut(s) | 815 |
| Bsh1236I | CGCG | 2 cut(s) | 592, 803 |
| BshFI | GGCC | 1 cut(s) | 800 |
| BslFI | GGGAC | 1 cut(s) | 745 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 759 |
| BsmFI | GGGAC | 1 cut(s) | 745 |
| BsmI | GAATGC | 1 cut(s) | 475 |
| BsnI | GGCC | 1 cut(s) | 800 |
| BspACI | CCGC | 2 cut(s) | 801, 803 |
| BspANI | GGCC | 1 cut(s) | 800 |
| BspCNI | CTCAG | 1 cut(s) | 631 |
| BspFNI | CGCG | 2 cut(s) | 592, 803 |
| BspLI | GGNNCC | 1 cut(s) | 625 |
| BspOI | GCTAGC | 1 cut(s) | 545 |
| BspQI | GCTCTTC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BsrI | ACTGG | 2 cut(s) | 284, 719 |
| BssECI | CCNNGG | 1 cut(s) | 801 |
| Bst4CI | ACNGT | 1 cut(s) | 175 |
| Bst6I | CTCTTC | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 3 cut(s) | 543, 648, 798 |
| BstDEI | CTNAG | 3 cut(s) | 22, 264, 639 |
| BstDSI | CCRYGG | 1 cut(s) | 801 |
| BstEII | GGTNACC | 1 cut(s) | 201 |
| BstF5I | GGATG | 2 cut(s) | 52, 733 |
| BstFNI | CGCG | 2 cut(s) | 592, 803 |
| BstHHI | GCGC | 1 cut(s) | 592 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 289, 542, 551, 589, 809 |
| BstNSI | RCATGY | 1 cut(s) | 650 |
| BstPI | GGTNACC | 1 cut(s) | 201 |
| BstUI | CGCG | 2 cut(s) | 592, 803 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 160 |
| BsuRI | GGCC | 1 cut(s) | 800 |
| BtgI | CCRYGG | 1 cut(s) | 801 |
| BtsCI | GGATG | 2 cut(s) | 52, 733 |
| BtsI | GCAGTG | 1 cut(s) | 744 |
| BtsIMutI | CAGTG | 1 cut(s) | 744 |
| Cac8I | GCNNGC | 3 cut(s) | 543, 648, 798 |
| CaiI | CAGNNNCTG | 1 cut(s) | 134 |
| CfoI | GCGC | 1 cut(s) | 592 |
| Cfr13I | GGNCC | 2 cut(s) | 624, 750 |
| Cfr42I | CCGCGG | 1 cut(s) | 804 |
| Csp6I | GTAC | 1 cut(s) | 432 |
| CviAII | CATG | 3 cut(s) | 14, 185, 647 |
| CviQI | GTAC | 1 cut(s) | 432 |
| DdeI | CTNAG | 3 cut(s) | 22, 264, 639 |
| DraI | TTTAAA | 1 cut(s) | 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 61 |
| EarI | CTCTTC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 2 cut(s) | 624, 750 |
| Eco57I | CTGAAG | 3 cut(s) | 57, 603, 834 |
| Eco91I | GGTNACC | 1 cut(s) | 201 |
| EcoO109I | RGGNCCY | 1 cut(s) | 624 |
| EcoO65I | GGTNACC | 1 cut(s) | 201 |
| FaeI | CATG | 3 cut(s) | 17, 188, 650 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 276, 308, 486, 518 |
| FaqI | GGGAC | 1 cut(s) | 745 |
| FatI | CATG | 3 cut(s) | 13, 184, 646 |
| FblI | GTMKAC | 1 cut(s) | 772 |
| Fnu4HI | GCNGC | 2 cut(s) | 801, 804 |
| FokI | GGATG | 2 cut(s) | 59, 740 |
| Fsp4HI | GCNGC | 2 cut(s) | 801, 804 |
| FspBI | CTAG | 1 cut(s) | 542 |
| GlaI | GCGC | 1 cut(s) | 591 |
| GluI | GCNGC | 2 cut(s) | 801, 804 |
| HaeIII | GGCC | 1 cut(s) | 800 |
| HhaI | GCGC | 1 cut(s) | 592 |
| Hin1II | CATG | 3 cut(s) | 17, 188, 650 |
| Hin6I | GCGC | 1 cut(s) | 590 |
| HinP1I | GCGC | 1 cut(s) | 590 |
| HindIII | AAGCTT | 2 cut(s) | 290, 339 |
| HinfI | GANTC | 4 cut(s) | 40, 131, 179, 451 |
| HphI | GGTGA | 1 cut(s) | 645 |
| Hpy166II | GTNNAC | 1 cut(s) | 773 |
| Hpy188I | TCNGA | 3 cut(s) | 39, 130, 754 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 75 |
| Hpy8I | GTNNAC | 1 cut(s) | 773 |
| HpyAV | CCTTC | 3 cut(s) | 304, 488, 627 |
| HpyCH4III | ACNGT | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 305, 413, 646, 796 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 289, 542, 551, 589, 809 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 264, 639 |
| Hsp92II | CATG | 3 cut(s) | 17, 188, 650 |
| HspAI | GCGC | 1 cut(s) | 590 |
| KspI | CCGCGG | 1 cut(s) | 804 |
| LguI | GCTCTTC | 1 cut(s) | 61 |
| LmnI | GCTCC | 1 cut(s) | 400 |
| MaeI | CTAG | 1 cut(s) | 542 |
| MaeIII | GTNAC | 1 cut(s) | 201 |
| MboII | GAAGA | 3 cut(s) | 78, 457, 460 |
| MfeI | CAATTG | 1 cut(s) | 371 |
| MluCI | AATT | 7 cut(s) | 88, 256, 269, 371, 381, 523, 529 |
| MlyI | GAGTC | 1 cut(s) | 140 |
| MnlI | CCTC | 7 cut(s) | 19, 136, 139, 385, 484, 585, 634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 70 |
| MseI | TTAA | 7 cut(s) | 87, 168, 272, 296, 528, 600, 698 |
| MspA1I | CMGCKG | 1 cut(s) | 803 |
| MunI | CAATTG | 1 cut(s) | 371 |
| Mva1269I | GAATGC | 1 cut(s) | 475 |
| MvnI | CGCG | 2 cut(s) | 592, 803 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 289, 542, 551, 589, 809 |
| NheI | GCTAGC | 1 cut(s) | 541 |
| NlaIII | CATG | 3 cut(s) | 17, 188, 650 |
| NlaIV | GGNNCC | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 650 |
| PaeI | GCATGC | 1 cut(s) | 650 |
| PciSI | GCTCTTC | 1 cut(s) | 61 |
| PctI | GAATGC | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 70 |
| PfeI | GAWTC | 3 cut(s) | 40, 179, 451 |
| PkrI | GCNGC | 2 cut(s) | 802, 805 |
| PleI | GAGTC | 1 cut(s) | 139 |
| PpsI | GAGTC | 1 cut(s) | 139 |
| PpuMI | RGGWCCY | 1 cut(s) | 624 |
| PshBI | ATTAAT | 1 cut(s) | 87 |
| Psp5II | RGGWCCY | 1 cut(s) | 624 |
| PspEI | GGTNACC | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 1 cut(s) | 625 |
| PspPI | GGNCC | 2 cut(s) | 624, 750 |
| PspPPI | RGGWCCY | 1 cut(s) | 624 |
| PstNI | CAGNNNCTG | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 433 |
| RsaNI | GTAC | 1 cut(s) | 432 |
| SacII | CCGCGG | 1 cut(s) | 804 |
| SapI | GCTCTTC | 1 cut(s) | 61 |
| SaqAI | TTAA | 7 cut(s) | 87, 168, 272, 296, 528, 600, 698 |
| SatI | GCNGC | 2 cut(s) | 801, 804 |
| Sau96I | GGNCC | 2 cut(s) | 624, 750 |
| SchI | GAGTC | 1 cut(s) | 140 |
| Sfr303I | CCGCGG | 1 cut(s) | 804 |
| SgrBI | CCGCGG | 1 cut(s) | 804 |
| SinI | GGWCC | 2 cut(s) | 624, 750 |
| SmlI | CTYRAG | 1 cut(s) | 336 |
| SmoI | CTYRAG | 1 cut(s) | 336 |
| SphI | GCATGC | 1 cut(s) | 650 |
| Sse9I | AATT | 7 cut(s) | 88, 256, 269, 371, 381, 523, 529 |
| SsiI | CCGC | 2 cut(s) | 801, 803 |
| SspMI | CTAG | 1 cut(s) | 542 |
| TaaI | ACNGT | 1 cut(s) | 175 |
| TasI | AATT | 7 cut(s) | 88, 256, 269, 371, 381, 523, 529 |
| TauI | GCSGC | 2 cut(s) | 803, 806 |
| TfiI | GAWTC | 3 cut(s) | 40, 179, 451 |
| Tru1I | TTAA | 7 cut(s) | 87, 168, 272, 296, 528, 600, 698 |
| Tru9I | TTAA | 7 cut(s) | 87, 168, 272, 296, 528, 600, 698 |
| TscAI | CASTG | 1 cut(s) | 744 |
| TspDTI | ATGAA | 2 cut(s) | 201, 443 |
| TspRI | CASTG | 1 cut(s) | 744 |
| VpaK11BI | GGWCC | 2 cut(s) | 624, 750 |
| VspI | ATTAAT | 1 cut(s) | 87 |
| XapI | RAATTY | 2 cut(s) | 256, 381 |
| XceI | RCATGY | 1 cut(s) | 650 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 663 |
| XmiI | GTMKAC | 1 cut(s) | 772 |
| XmnI | GAANNNNTTC | 1 cut(s) | 70 |
| XspI | CTAG | 1 cut(s) | 542 |